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Evidence

AetherXeno is not a 17 million prediction dump. Every predicted effect is anchored in primary human hepatocyte ChIP-seq, and this page shows how those predictions stand up against independent data the model never saw. Two tabs are orthogonal validations: variants the model scores highly are enriched for being GTEx liver eQTLs and for overlapping a known transcription-factor motif. Two are clinical and phenotype cross-links: ClinVar and the GWAS Catalog, mirrored next to each predicted effect. Switch sources below.

An independent functional readout the model never saw. These atlas variants are also GTEx liver eQTLs, meaning they are associated with a change in a gene's expression in liver. Browse them with their predicted receptor effects.

VarianteGeneslopep valuePXR FXR AhR
chr17_10757264_C_TTMEM220-0.422.8e-16-68,864-21,696-41,216
chr2_85325063_C_ATGOLN2-0.332.5e-16-45,184-14,720-10,240
chr14_52821964_T_CGNPNAT1-0.251.9e-9-43,136-14,336-13,440
chr22_37675036_G_APDXP-DT0.725.3e-26-43,552-8,928-34,944
chr17_1910213_A_GENSG000002624450.421.2e-6-36,832-16,048-26,496
chr17_64150455_T_GTEX20.256.2e-6-34,240-14,624-16,128
chr6_56399929_T_CRCC2P7-0.472.8e-11-49,664-10,784-13,056
chr8_143927204_T_CPLEC-0.292.7e-9-22,720-8,176-24,576
chr22_37024082_C_GMPST-0.375.4e-12-89,728-33,888-38,144
chr17_45247818_T_CEFCAB15P-0.632.4e-9-18,816-3,904-24,320
chr2_85951845_T_AST3GAL5-0.442.0e-12-93,312-26,016-55,808
chr12_47346753_T_CLINC02156-0.532.7e-739,3608,9608,448
chr20_13453060_C_TTASP1-0.264.9e-8-58,816-18,976-35,200
chr17_82385140_C_TOGFOD30.305.3e-750,01621,52023,296
chr7_66592167_T_CGS1-124K5.4-0.355.3e-13-3,584-1,536-22,272
chr16_31093557_G_AVKORC1-1.002.3e-72-52,128-12,704-36,480
chr9_117491629_A_GENSG000002335690.271.0e-755,29612,80012,544
chr14_69888141_A_CSMOC10.378.3e-1070,91221,24825,344
chr4_25914236_C_ASMIM20-0.711.5e-34-51,712-13,168-18,432
chr12_49742405_G_ATMBIM60.491.9e-659,64821,24814,208
chr11_707424_C_TEPS8L20.422.6e-1741,47216,5128,704
chr15_85358358_C_GFABP5P9-0.291.2e-535,32812,92815,232
chr2_111176530_T_GACOXL-0.337.3e-10-95,872-23,712-44,032
chr7_48088999_G_AENSG000002255070.402.5e-843,77613,53626,624
chr16_66502354_T_CBEAN1-AS1-0.472.1e-11-54,816-25,504-75,136
chr2_85325138_A_GRETSAT0.327.7e-744,03214,3049,984
chr2_10408407_C_GHPCAL1-0.311.9e-729,76013,50424,064
chr2_85951823_C_AST3GAL5-0.442.0e-12-40,896-11,648-17,408
chr5_1186006_G_ASLC6A19-0.763.8e-20-40,960352-7,936
chr22_37681711_A_GPDXP-DT0.572.8e-137,9362,62421,632
chr12_124681500_A_GENSG000002804440.292.2e-7-23,872-3,296-25,856
chrX_48505711_A_TENSG00000204620-0.316.5e-829,56811,77618,048
chr15_78945063_A_GCTSH-0.471.1e-9-24,704-1,808-22,528
chr7_66148700_C_TENSG000002268240.731.2e-3136,92811,20013,056
chr4_69020525_C_TENSG000002506960.411.0e-10-27,392-11,904-11,680
chr12_18676284_G_ACAPZA3-0.453.2e-6-28,992-12,160-18,240
chr5_134594467_G_CCAMLG0.345.2e-5-21,496-10,656-19,072
chr4_38787903_C_TTLR1-0.352.6e-11-31,424-10,848-15,424
chr3_14141910_T_CXPC0.286.5e-13-18,816-9,152-18,432
chr1_16178825_A_GEPHA2-0.402.0e-19-28,608-11,136-16,896
chr7_490040_G_THRAT920.841.6e-1810,68810,67216,896
chr10_30542458_A_GMAP3K8-0.187.3e-633,0244,3527,936
chr8_143927143_T_CPLEC-0.292.7e-924,0007,98415,360
chr3_155870816_T_AENSG00000286585-0.831.0e-5-2,624-1,824-16,384
chr6_3157554_C_TBPHL0.794.0e-2628,9286324,608
chr16_75251266_A_CENSG000002801520.481.8e-8-1,408-1,320-17,536
chr4_76306523_A_CFAM47E-0.265.8e-66,5282,81615,872
chr11_18526636_T_GLDHC0.533.1e-7-25,600-3,904-16,384
chr8_8701745_G_ACLDN230.532.4e-1623,0404,0325,376
chr2_218284440_A_GENSG00000261338-0.615.2e-13-28,928-8,576-8,960
chr2_240856579_A_GMAB21L4-0.462.7e-725,0889,18411,008
chr3_50303331_G_TCYB561D2-0.551.5e-4-18,048-8,768-8,192
chr1_212242691_T_ALINC026080.416.2e-7-16,448-7,936-15,360
chr19_11848749_T_CZNF4390.842.3e-614,7203,12015,872
chr22_36465325_G_ATXN20.471.2e-6-20,864-5,728-14,592
chr12_132609027_G_ALRCOL10.447.9e-1119,4568,8007,040
chr11_64285685_T_GENSG000002888520.291.9e-51,536-2,072-15,104
chr4_102780620_T_CUBE2D3-AS10.453.9e-819,3928,44812,672
chr1_47138337_T_ALINC008530.625.9e-921,6648,7048,448
chr3_134486389_C_AANAPC130.592.2e-484,9922,24014,336
chr5_79030927_G_CARSB0.431.9e-9-25,344-5,120-7,040
chr9_34612180_A_GRPP25L0.201.6e-6-8,576-3,008-13,056
chr22_37816755_A_GGALR3-0.673.0e-19-24,224-7,776-13,952
chr8_8702073_G_ACLDN230.522.2e-15-1282,68812,800
chr16_83943106_G_TENSG00000260932-0.542.2e-14-24,448-8,256-5,120
chr19_5076766_C_TKDM4B0.494.0e-1513,7926,16014,688
chr8_8702078_A_GCLDN230.457.6e-14-768-1,920-12,544
chr12_49347934_G_ADNAJC22-0.442.0e-5-24,576-5,344-10,240
chr1_147115071_G_CPRKAB2-0.171.1e-715,5206,40013,824
chr10_58269523_G_ACISD10.442.7e-1724,3207,45611,776
chr3_129433741_C_TMBD4-0.756.8e-16-18,176-7,648-8,832
chr2_10408451_C_THPCAL1-0.311.9e-724,1287,2329,728
chr7_150323292_G_ALRRC610.992.6e-468,5765,76012,032
chr1_23479135_G_CTCEA30.362.1e-6-23,232-5,056-8,832
chr3_124730405_T_CUMPS-0.161.7e-6-9,728-1,536-12,544
chr5_1634098_T_CENSG00000232615-0.722.7e-9-3,616-544-12,544
chr17_16865230_G_AKRT17P41.219.2e-293,6482,76813,544
chr8_27299790_C_TTRIM35-0.261.3e-8-17,152-5,952-7,424
chr19_11365923_C_TRGL30.571.1e-5-7,648-3,904-13,440
chr22_21002027_C_GTHAP7-AS1-0.551.0e-56,0162,78412,288
chr1_168267027_A_GSFT2D2-0.301.1e-922,3363,45612,800
chr22_37197051_A_GC1QTNF60.324.0e-1321,8885,8887,936
chr5_1186100_A_GSLC6A190.559.9e-18-21,888-4,384-8,960
chr17_64975479_G_AAMZ2P11.177.9e-43-22,656-3,264-8,448
chr1_234975303_T_AENSG000002380050.511.0e-8-22,272-5,184-6,144
chr22_36506816_G_AFOXRED20.437.3e-108,2561,31212,032
chr15_85722551_A_CLINC02883-0.362.6e-9-15,296-7,264-7,168
chr3_98786588_A_CPDLIM1P40.223.7e-516,7687,0406,848
chr10_52774853_A_GMBL20.754.5e-3222,0486,7528,960
chr9_17135117_C_TCNTLN-0.266.5e-6-13,824-2,368-11,008
chr16_90018731_A_CDBNDD10.494.0e-66,27296012,544
chr18_24014494_G_ATTC39C-AS1-0.545.2e-93,4561,30412,288
chr20_35455151_C_TCEP2500.921.4e-5-20,160-1,088-512
chr2_113199244_C_GPAX8-AS10.774.4e-1920,864-480-256
chr20_62146682_C_GLSM14B-0.349.4e-87,2966,4965,504
chr7_48088961_A_TENSG000002255070.435.3e-10-19,712-4,464-5,376
chr9_113377036_A_CHDHD3-0.209.6e-10-6,528-2,272-10,240
chr4_87417167_C_AHSD17B11-1.258.0e-1315,8726,4327,296
chr2_241734898_A_CD2HGDH-0.242.7e-70-1,424-11,776
chr11_207410_C_TENSG000002772900.622.1e-182,1763,58411,264
chr7_1157338_A_GZFAND2A-DT-0.642.5e-50-12,672-6,336-2,304
chr6_52745832_A_GGSTA2-0.391.1e-1718,7526,3367,040
chr2_240857487_C_TMAB21L4-0.434.4e-6-18,944-6,528-7,936
chr9_89605006_A_CENSG00000285907-0.732.7e-3115,7449760
chr3_74546668_G_ACNTN3-0.484.1e-5-11,392-6,208-7,936
chr3_149225241_G_AENSG00000286714-0.651.7e-13-14,848-6,208-8,192
chr19_48907841_G_CTULP20.509.1e-712,8006,4002,432
chr7_66592172_C_GLINC02604-0.251.0e-74,09641610,496
chr7_150323437_C_TLRRC610.954.7e-512,0488329,728
chr17_43029818_C_TNBR2-0.473.1e-25-4,128-3,584-11,136
chr5_134018343_C_TVDAC1-0.183.8e-6-14,464-5,312-10,240
chr7_1556203_A_GINTS1-0.246.0e-79,6003,42410,240
chr3_125916038_G_CFAM86JP1.096.4e-303,5841,26410,240
chr7_66148650_G_TCCT6P10.551.2e-1014,2726,0168,704
chr9_6681505_C_GENSG000002254890.855.7e-7-15,104-1,824-4,608
chr11_63609847_G_CPLAAT3-0.451.1e-16-12,416-4,192-10,624
chr10_98396270_G_TPYROXD20.776.3e-2710,6244,83210,624
chr19_44737327_T_CCEACAM20-0.472.7e-5-13,760-4,256-11,008
chr10_80078900_A_CTMEM254-AS11.048.1e-2712,8003,96810,496
chr2_178478636_C_TCHROMR0.979.0e-8-18,6246083,584
chr17_77392454_C_TENSG00000287257-0.561.7e-12-18,560-4,320-4,608
chr9_37502419_A_GENSG000002301880.592.3e-1210,4964,7366,272
chr1_1375267_C_TATAD3B-1.191.8e-13-18,176-768-4,608
chr1_44674576_C_TARMH11.541.1e-69,0884,83210,240
chr14_64503744_G_AHSPA20.195.0e-5-6,4001,95210,240
chr4_993885_G_AENSG000002495920.311.6e-614,0165,7605,632
chr8_8701891_C_GCLDN230.522.8e-15-9,728-4,672-6,144
chr19_16660226_G_ASMIM7-0.442.9e-7-10,624-5,888-8,704
chr4_69020433_A_TENSG00000250696-0.281.5e-6-13,440-5,696-4,960
chr18_63367557_T_GKDSR-DT0.421.8e-10-8,0643,26410,496
chr2_159286164_T_CWDSUB10.331.0e-813,9522,59210,496
chr16_27315893_T_GIL4R0.303.3e-1815,5525,34410,496
chr22_41308868_C_TL3MBTL2-0.213.9e-617,2185,4246,976
chr6_2999467_C_GNQO2-AS11.001.4e-3017,1523,3006,784
chr15_63503429_T_CUSP30.213.2e-516,6405,7928,192
chr3_50303404_C_ARNF123-0.472.9e-6-14,336-5,568-4,352
chr6_2999320_G_ANQO2-AS11.113.4e-35-15,744-5,568-7,168
chr5_56815260_A_CSETD90.486.6e-10-1,280-648-9,472
chr10_30542525_G_AMAP3K8-0.173.5e-5-17,408-5,696-8,576
chr19_58511807_A_GZNF584-0.466.9e-129,4723,42410,240
chr17_74442833_C_GGPRC5C-0.448.8e-9-14,720-2,240-10,240
chr17_75877990_G_AGALK10.321.4e-56,08064810,240
chr7_138891201_T_CKIAA15490.665.3e-1713,9204,1607,296
chr16_80828640_C_TCDYL2-0.292.7e-6-13,504-5,680-8,608
chr8_27703113_A_GCCDC250.229.2e-7-13,184-4,128-8,704
chr1_150410805_C_TMRPS210.225.0e-6-16,256-5,600-7,424
chr3_63912239_T_CSCAANT10.552.1e-61,536-960-9,216
chr7_76358495_G_AUPK3B0.361.5e-62,3047369,216
chr7_1102102_C_TZFAND2A-DT-0.341.9e-8-12,416-5,408-6,656
chr19_15897833_G_AENSG000002670560.355.8e-10-12,288-5,088-9,984
chr19_49451759_G_TALDH16A1-0.332.4e-813,4404489,984
chr2_127194687_T_CMAP3K2-DT-0.193.9e-6-13,984-5,504-8,064
chr11_2370098_G_CCD81-0.852.7e-5-13,760-4,992-9,472
chr8_115962077_C_TTRPS1-0.372.6e-6-12,704-4,320-6,080
chr1_234716584_C_TENSG00000282097-0.594.3e-1712,0325,4726,912
chr2_111920393_G_TENSG00000286904-0.293.5e-6-13,728-5,472-7,040
chr7_150323400_T_CLRRC610.951.1e-5113,3122,6885,888
chr22_37803047_A_GGALR30.481.1e-95,6964,2888,960
chr22_50562842_G_ASYCE31.662.1e-325,0885288,960
chr19_44500683_G_CZNF1800.402.8e-89,6007369,728
chr15_40755400_G_ACCDC320.444.9e-14-6,272-128-9,728
chr17_50939986_G_AENSG00000247011-0.491.1e-14-11,136-4,656-9,728
chr17_75878057_G_CGALK10.366.9e-7-16,576-984-8,832
chr10_50624602_G_CSGMS1-AS1-0.141.3e-5-768-2,816-9,216
chr10_79927343_G_ANUTM2B-AS1-0.805.7e-9-16,000-832-4,864
chr2_20593607_C_TENSG000002699760.413.9e-6-16,128-3,904-4,608
chr14_76834520_C_TANGEL1-0.202.6e-5-10,880-5,216-7,168
chr17_47948790_A_GLRRC460.351.1e-616,0004,9923,584
chr10_5890224_C_AFBH1-0.172.6e-64,3849248,960
chr1_11676543_C_TMAD2L2-0.231.5e-7-15,808-4,608-8,960
chr5_141919412_T_CDELE10.352.2e-98,6404,7368,576
chr6_3157575_C_TTUBB2B0.761.2e-22-15,296416-2,048
chr7_149091246_G_AZNF7860.551.7e-1006727,936
chr17_80036614_C_ACCDC400.892.1e-18-4489609,216
chr6_138107590_T_GPERP-0.301.9e-9-6,144576-8,448
chr22_30635707_G_TTCN20.189.1e-5-5121448,448
chr3_124620680_G_AKALRN0.457.4e-16-14,8481,5682,304
chr9_114386047_T_CWHRN0.392.1e-90-3,968384
chr17_7404617_C_TNLGN20.243.8e-73,2641,0488,960
chr2_231483154_T_GENSG00000283312-0.449.4e-87,6808008,960
chr8_143368689_C_TRHPN11.551.3e-71,0242,0167,680
chr22_50525826_C_TSYCE31.701.0e-20-8963928,192
chr14_94463371_C_TSERPINA11-0.188.1e-6-15,168-4,480-3,712
chr5_1181883_T_GCTD-3080P12.30.412.4e-1312,3524,7683,840
chr11_124954085_C_TCCDC15-DT0.626.6e-162,4961,3128,448
chr7_66148663_C_TRABGEF10.512.4e-5-10,880-4,736-6,912
chr16_3158994_G_CZNF213-AS10.298.8e-10-3,008-320-8,704
chr2_189784079_G_TORMDL10.572.5e-162,6882,4008,704
chr1_3856982_A_CCEP104-0.401.6e-13-1,344-848-8,320
chr14_34715117_T_CCFL2-0.203.4e-69,0882,4968,320
chr17_41786197_C_TNT5C3B-0.543.8e-710,8804,8163,584
chr7_155291183_T_GINSIG1-DT0.461.3e-9-9,920-1,056-7,424
chr9_127987153_T_CPIP5KL10.853.2e-811,7123,4886,656
chr6_43278646_T_CTTBK1-0.214.5e-77,9364,6403,840
chr4_88107623_A_GABCG20.278.2e-614,0804,2885,120
chr11_842682_A_GCD1510.643.9e-43640-1,040-8,192
chr11_57441894_T_CTIMM10-0.331.2e-6-12,704-4,672-6,272
chr5_132294079_C_GMIR3936HG0.216.7e-80-736-7,680
chr6_3157620_T_CBPHL0.539.5e-16-1,664-768-7,680
chr8_8701998_A_GCLDN230.531.0e-152,688-2,3367,168

Showing the 200 strongest of 1,881 by predicted receptor effect. Scores are the raw center bin Δ, ALT minus REF; click PXR, FXR or AhR to sort. The full set is on the Download page.