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ACTRT2

This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.

Scored variants near ACTRT2

chr1:2,921,466..3,122,903, gene body plus 100 kb. Showing the strongest 200 by effect size.

Variant	Position	PXR	FXR	AhR	AF
chr1_2968731_A_C	chr1:2968731	-0.751	-0.703	-1.000	<0.001%
chr1_3066348_G_A	chr1:3066348	-1.000	-0.673	-1.000	0.0039%
chr1_3066352_G_A	chr1:3066352	-1.000	-0.655	-1.000	0.0013%
chr1_2968736_C_T	chr1:2968736	0.992	1.000	1.000	0.0013%
chr1_2968708_A_G	chr1:2968708	0.734	0.680	1.000	0.018%
chr1_2968730_T_C	chr1:2968730	-0.696	-0.643	-1.000	<0.001%
chr1_3066347_C_A	chr1:3066347	0.832	0.411	0.612	0.0013%
chr1_3012662_C_T	chr1:3012662	-0.443	-0.262	-1.000	<0.001%
chr1_2968759_G_T	chr1:2968759	-0.539	-0.563	-1.000	0.0066%
chr1_3066345_C_T	chr1:3066345	-0.742	-0.421	-1.000	0.0046%
chr1_2922212_C_G	chr1:2922212	-0.397	-0.414	-1.000	<0.001%
chr1_2968769_G_A	chr1:2968769	0.687	0.789	1.000	4.13%
chr1_2922208_G_A	chr1:2922208	-0.400	-0.292	-1.000	<0.001%
chr1_2922211_C_T	chr1:2922211	-0.386	-0.313	-1.000	0.0026%
chr1_2968759_G_A	chr1:2968759	-0.481	-0.516	-1.000	<0.001%
chr1_2968793_G_A	chr1:2968793	0.619	0.579	1.000	0.066%
chr1_3012607_C_T	chr1:3012607	0.366	0.266	1.000	0.047%
chr1_3066340_G_A	chr1:3066340	-0.552	-0.355	-0.729	<0.001%
chr1_3031440_C_G	chr1:3031440	0.250	0.170	0.924	0.0013%
chr1_2922235_G_C	chr1:2922235	-0.237	-0.245	-0.918	0.0013%
chr1_3012608_C_G	chr1:3012608	0.300	0.230	0.903	<0.001%
chr1_3012599_C_T	chr1:3012599	0.265	0.203	0.850	<0.001%
chr1_3012650_G_C	chr1:3012650	-0.252	-0.160	-0.803	<0.001%
chr1_3066584_G_A	chr1:3066584	0.435	0.439	0.529	0.0013%
chr1_2968704_G_A	chr1:2968704	-0.349	-0.412	-0.759	<0.001%
chr1_3069778_C_T	chr1:3069778	-0.416	-0.039	-0.260	<0.001%
chr1_3012613_C_T	chr1:3012613	0.238	0.197	0.726	<0.001%
chr1_2922237_G_A	chr1:2922237	0.209	0.183	0.700	<0.001%
chr1_3061140_A_T	chr1:3061140	-0.246	-0.195	-0.688	<0.001%
chr1_2922236_C_T	chr1:2922236	-0.187	-0.174	-0.676	0.011%
chr1_2968792_C_T	chr1:2968792	0.281	0.458	0.665	0.0020%
chr1_2968783_C_A	chr1:2968783	-0.246	-0.250	-0.653	<0.001%
chr1_3012605_C_T	chr1:3012605	0.247	0.148	0.653	<0.001%
chr1_2968740_T_C	chr1:2968740	-0.319	-0.240	-0.647	0.0020%
chr1_2968750_G_A	chr1:2968750	-0.336	-0.308	-0.571	<0.001%
chr1_2968749_T_G	chr1:2968749	0.333	0.343	0.565	0.0013%
chr1_2968768_C_T	chr1:2968768	-0.295	-0.324	-0.588	0.0046%
chr1_3061109_G_A	chr1:3061109	0.195	0.038	0.576	0.011%
chr1_2968804_G_T	chr1:2968804	-0.241	-0.226	-0.547	0.0020%
chr1_3031182_G_C	chr1:3031182	0.156	0.141	0.547	0.014%
chr1_2968605_G_A	chr1:2968605	-0.130	-0.178	-0.512	0.0013%
chr1_2968673_C_T	chr1:2968673	-0.151	-0.202	-0.506	0.0026%
chr1_2968834_A_C	chr1:2968834	-0.208	-0.249	-0.506	4.72%
chr1_2922205_C_T	chr1:2922205	0.218	0.133	0.494	0.0020%
chr1_2968794_A_G	chr1:2968794	0.233	0.221	0.494	<0.001%
chr1_3012609_C_A	chr1:3012609	0.169	0.103	0.494	0.0013%
chr1_3069647_A_C	chr1:3069647	-0.127	-0.088	-0.491	<0.001%
chr1_3012685_C_T	chr1:3012685	-0.204	-0.097	-0.491	0.018%
chr1_3061139_C_A	chr1:3061139	-0.170	-0.081	-0.488	<0.001%
chr1_2968599_C_T	chr1:2968599	-0.271	0.065	-0.365	<0.001%
chr1_3061159_A_T	chr1:3061159	0.271	0.124	0.312	0.0033%
chr1_2968682_C_T	chr1:2968682	0.270	0.272	0.471	0.0020%
chr1_2968644_G_A	chr1:2968644	0.218	0.327	0.465	<0.001%
chr1_3012614_C_T	chr1:3012614	0.174	0.110	0.465	0.067%
chr1_3012668_A_G	chr1:3012668	-0.181	-0.103	-0.459	<0.001%
chr1_2968763_G_A	chr1:2968763	0.183	0.349	0.441	0.0046%
chr1_3012623_C_A	chr1:3012623	0.159	0.107	0.438	<0.001%
chr1_2922215_G_A	chr1:2922215	0.137	0.102	0.435	0.0079%
chr1_2968824_G_A	chr1:2968824	-0.231	-0.185	-0.435	0.0039%
chr1_2968702_G_A	chr1:2968702	-0.245	-0.188	-0.388	0.016%
chr1_3012609_C_G	chr1:3012609	0.131	0.092	0.426	0.035%
chr1_2946230_C_A	chr1:2946230	0.030	0.118	0.424	<0.001%
chr1_2968790_G_A	chr1:2968790	-0.180	-0.152	-0.424	<0.001%
chr1_3012687_C_G	chr1:3012687	0.135	0.051	0.424	<0.001%
chr1_3031670_G_A	chr1:3031670	0.007	0.082	0.424	0.0026%
chr1_3066328_G_A	chr1:3066328	0.233	0.152	0.229	0.0033%
chr1_2922186_G_C	chr1:2922186	-0.134	-0.086	-0.406	0.0066%
chr1_2968755_G_C	chr1:2968755	0.208	0.197	0.406	0.049%
chr1_2922206_G_T	chr1:2922206	-0.169	-0.100	-0.400	0.011%
chr1_2968694_G_T	chr1:2968694	-0.203	-0.138	-0.400	<0.001%
chr1_3031238_A_G	chr1:3031238	-0.007	-0.042	-0.400	0.0013%
chr1_3066347_C_T	chr1:3066347	0.220	0.112	0.271	0.0033%
chr1_3012597_C_T	chr1:3012597	0.067	0.075	0.385	0.0059%
chr1_2968637_T_C	chr1:2968637	-0.131	-0.072	-0.371	<0.001%
chr1_2968835_G_C	chr1:2968835	-0.137	-0.175	-0.371	<0.001%
chr1_2968755_G_T	chr1:2968755	0.188	0.192	0.365	0.0013%
chr1_2968823_C_T	chr1:2968823	0.201	0.176	0.324	0.0013%
chr1_3012635_G_A	chr1:3012635	-0.116	-0.084	-0.356	0.237%
chr1_2946229_C_T	chr1:2946229	0.023	0.101	0.347	<0.001%
chr1_3012805_G_T	chr1:3012805	-0.003	-0.041	-0.347	<0.001%
chr1_2946231_C_T	chr1:2946231	0.020	0.100	0.344	<0.001%
chr1_2968824_G_T	chr1:2968824	-0.140	-0.122	-0.341	0.0013%
chr1_3066399_T_C	chr1:3066399	-0.193	-0.234	-0.153	0.0013%
chr1_3069618_G_A	chr1:3069618	0.131	0.087	0.334	0.0020%
chr1_3012602_C_T	chr1:3012602	0.092	0.091	0.329	0.0026%
chr1_2922234_C_T	chr1:2922234	0.062	0.081	0.324	0.0033%
chr1_3012695_C_G	chr1:3012695	-0.098	-0.046	-0.324	0.0020%
chr1_3069619_G_C	chr1:3069619	0.084	0.065	0.320	0.0099%
chr1_3066320_T_C	chr1:3066320	-0.180	-0.185	-0.282	<0.001%
chr1_2922185_C_A	chr1:2922185	0.135	0.082	0.312	0.0033%
chr1_2968714_G_A	chr1:2968714	0.176	0.169	0.300	0.0013%
chr1_2968719_G_A	chr1:2968719	0.099	0.246	0.312	0.011%
chr1_3031661_G_C	chr1:3031661	0.126	0.082	0.312	<0.001%
chr1_2968839_C_T	chr1:2968839	-0.105	-0.115	-0.306	0.0072%
chr1_3031207_T_A	chr1:3031207	0.090	-0.004	0.306	0.757%
chr1_2968727_T_C	chr1:2968727	0.163	0.119	0.147	<0.001%
chr1_2968840_G_C	chr1:2968840	-0.118	-0.155	-0.288	0.0020%
chr1_3012701_C_G	chr1:3012701	0.020	0.030	0.285	0.0033%
chr1_2922206_G_A	chr1:2922206	-0.142	-0.076	-0.282	<0.001%
chr1_2968716_A_G	chr1:2968716	0.097	0.217	0.282	0.0013%
chr1_2968612_C_T	chr1:2968612	0.158	0.037	0.088	<0.001%
chr1_3066313_C_T	chr1:3066313	-0.158	-0.089	-0.194	0.0026%
chr1_2922227_C_A	chr1:2922227	-0.075	-0.053	-0.276	<0.001%
chr1_2968783_C_T	chr1:2968783	-0.136	-0.105	-0.276	0.017%
chr1_2968816_C_T	chr1:2968816	-0.128	-0.093	-0.276	<0.001%
chr1_3031182_G_A	chr1:3031182	0.055	0.025	0.276	0.0033%
chr1_3012822_A_C	chr1:3012822	0.048	0.046	0.274	0.0013%
chr1_2968698_G_T	chr1:2968698	-0.121	-0.053	-0.271	<0.001%
chr1_3066396_G_A	chr1:3066396	0.140	0.464	0.218	<0.001%
chr1_3012767_A_G	chr1:3012767	0.091	0.030	0.268	<0.001%
chr1_3066424_C_T	chr1:3066424	-0.148	-0.114	-0.212	0.017%
chr1_2922255_G_C	chr1:2922255	0.110	0.053	0.259	0.012%
chr1_3069619_G_A	chr1:3069619	0.048	0.055	0.256	0.012%
chr1_2922146_C_A	chr1:2922146	0.094	0.071	0.253	<0.001%
chr1_2968855_G_A	chr1:2968855	-0.041	-0.041	-0.253	<0.001%
chr1_3031268_G_A	chr1:3031268	0.072	-0.037	0.253	<0.001%
chr1_3061065_C_T	chr1:3061065	-0.141	-0.132	-0.088	<0.001%
chr1_2922186_G_A	chr1:2922186	-0.108	-0.041	-0.247	0.0085%
chr1_2968674_G_A	chr1:2968674	-0.140	-0.094	-0.041	<0.001%
chr1_3031649_C_T	chr1:3031649	-0.027	-0.019	-0.247	<0.001%
chr1_2968845_C_A	chr1:2968845	0.138	0.060	0.218	<0.001%
chr1_3012625_C_T	chr1:3012625	0.081	0.052	0.244	<0.001%
chr1_3061061_C_T	chr1:3061061	0.133	0.053	0.124	0.0020%
chr1_3061189_C_A	chr1:3061189	-0.087	-0.056	-0.235	<0.001%
chr1_3066401_G_A	chr1:3066401	-0.133	-0.122	-0.100	<0.001%
chr1_2922198_G_A	chr1:2922198	-0.095	-0.067	-0.229	<0.001%
chr1_2946207_C_G	chr1:2946207	0.019	0.058	0.229	<0.001%
chr1_2968690_C_T	chr1:2968690	-0.108	-0.129	-0.229	0.0026%
chr1_2946239_C_T	chr1:2946239	0.012	0.062	0.226	0.0046%
chr1_3012603_C_A	chr1:3012603	0.065	0.057	0.226	0.0013%
chr1_2968840_G_A	chr1:2968840	-0.087	-0.098	-0.224	0.0092%
chr1_3066388_G_C	chr1:3066388	-0.126	-0.129	-0.106	0.0013%
chr1_3066468_T_G	chr1:3066468	-0.126	-0.122	-0.106	0.037%
chr1_3069759_G_C	chr1:3069759	0.125	0.006	0.150	<0.001%
chr1_3061059_G_A	chr1:3061059	-0.125	-0.128	0.024	0.0013%
chr1_2922154_C_T	chr1:2922154	0.097	0.051	0.218	<0.001%
chr1_3012686_C_T	chr1:3012686	0.083	0.031	0.218	0.0013%
chr1_3066305_C_T	chr1:3066305	0.121	0.089	0.153	<0.001%
chr1_3066467_G_A	chr1:3066467	-0.121	-0.036	-0.141	0.0033%
chr1_3012592_C_T	chr1:3012592	0.065	0.048	0.212	<0.001%
chr1_3012765_G_T	chr1:3012765	0.105	0.040	0.212	0.0013%
chr1_3069789_C_A	chr1:3069789	-0.120	-0.008	-0.066	<0.001%
chr1_2946213_C_T	chr1:2946213	0.008	0.058	0.209	<0.001%
chr1_2968640_T_C	chr1:2968640	0.062	0.019	0.206	<0.001%
chr1_3012831_C_T	chr1:3012831	0.028	0.043	0.203	0.0092%
chr1_3069610_G_C	chr1:3069610	0.073	0.033	0.200	0.025%
chr1_3061168_A_C	chr1:3061168	0.072	0.025	0.200	<0.001%
chr1_3066475_C_G	chr1:3066475	0.113	0.112	0.082	<0.001%
chr1_3066654_A_T	chr1:3066654	-0.058	-0.074	-0.200	<0.001%
chr1_2968811_T_A	chr1:2968811	-0.080	-0.072	-0.194	<0.001%
chr1_2968826_C_T	chr1:2968826	-0.082	-0.063	-0.194	<0.001%
chr1_3061199_G_A	chr1:3061199	-0.082	-0.048	-0.194	0.0020%
chr1_2968698_G_A	chr1:2968698	-0.106	-0.039	-0.188	0.0020%
chr1_2968842_G_T	chr1:2968842	-0.055	-0.107	-0.188	0.123%
chr1_2968603_C_T	chr1:2968603	-0.063	-0.094	-0.182	0.0059%
chr1_2968604_G_A	chr1:2968604	-0.042	-0.102	-0.182	0.0020%
chr1_2968618_C_G	chr1:2968618	-0.103	-0.042	0.059	<0.001%
chr1_3012684_G_A	chr1:3012684	-0.086	-0.031	-0.182	0.0053%
chr1_3012867_C_T	chr1:3012867	0.095	0.041	0.182	0.0013%
chr1_3031271_C_A	chr1:3031271	-0.024	-0.051	-0.182	0.0013%
chr1_3069791_C_A	chr1:3069791	-0.103	0.012	-0.047	<0.001%
chr1_3012674_T_C	chr1:3012674	-0.095	-0.041	-0.179	0.0020%
chr1_2946422_T_G	chr1:2946422	0.037	0.054	0.176	0.0013%
chr1_2968842_G_A	chr1:2968842	-0.023	-0.096	-0.176	<0.001%
chr1_3066540_A_T	chr1:3066540	0.100	0.117	0.094	0.0020%
chr1_3066613_C_A	chr1:3066613	0.100	0.122	0.153	<0.001%
chr1_3061066_C_T	chr1:3061066	-0.099	-0.102	-0.065	<0.001%
chr1_2968592_C_T	chr1:2968592	-0.098	-0.094	-0.165	0.324%
chr1_3012648_G_C	chr1:3012648	-0.061	-0.030	-0.174	<0.001%
chr1_3012868_C_T	chr1:3012868	0.073	0.041	0.174	<0.001%
chr1_3061030_G_T	chr1:3061030	0.098	0.096	-0.059	<0.001%
chr1_3066299_G_A	chr1:3066299	-0.098	-0.046	-0.135	2.14%
chr1_3012780_G_C	chr1:3012780	0.097	0.045	-0.041	<0.001%
chr1_2968718_C_G	chr1:2968718	-0.015	0.005	0.171	0.0085%
chr1_2968804_G_A	chr1:2968804	-0.068	-0.042	-0.171	0.0033%
chr1_2968861_C_G	chr1:2968861	-0.063	-0.058	-0.171	0.0033%
chr1_3012831_C_A	chr1:3012831	0.047	0.069	0.171	<0.001%
chr1_3066456_G_A	chr1:3066456	-0.097	-0.084	-0.141	<0.001%
chr1_3066610_T_C	chr1:3066610	-0.097	-0.071	-0.129	<0.001%
chr1_2968839_C_A	chr1:2968839	-0.025	-0.049	-0.165	0.0013%
chr1_3066285_C_T	chr1:3066285	-0.073	-0.061	-0.165	<0.001%
chr1_3069620_G_T	chr1:3069620	0.013	0.043	0.164	0.0013%
chr1_2968751_T_C	chr1:2968751	0.092	0.024	0.147	<0.001%
chr1_3012669_G_A	chr1:3012669	-0.065	-0.025	-0.162	<0.001%
chr1_3066324_C_T	chr1:3066324	0.092	-0.003	0.018	0.0039%
chr1_2922260_C_T	chr1:2922260	0.038	0.032	0.159	0.0013%
chr1_3012789_G_C	chr1:3012789	-0.090	-0.051	-0.068	0.0013%
chr1_3066299_G_C	chr1:3066299	-0.075	-0.043	-0.159	<0.001%
chr1_3066425_G_A	chr1:3066425	-0.090	-0.056	-0.124	0.0013%
chr1_3066482_G_A	chr1:3066482	0.090	0.030	-0.153	<0.001%
chr1_3066369_C_T	chr1:3066369	0.088	0.000	0.000	<0.001%
chr1_2968793_G_T	chr1:2968793	-0.087	0.018	-0.141	3.21%
chr1_2968829_G_T	chr1:2968829	-0.047	-0.049	-0.153	0.0013%
chr1_3066307_T_C	chr1:3066307	-0.087	0.000	-0.053	<0.001%
chr1_3069720_C_T	chr1:3069720	-0.085	-0.043	-0.094	<0.001%
chr1_3069792_C_A	chr1:3069792	0.039	0.015	0.150	<0.001%
chr1_3069609_G_C	chr1:3069609	0.027	0.033	0.148	<0.001%
chr1_3069714_C_T	chr1:3069714	-0.083	-0.040	-0.120	<0.001%
chr1_2922146_C_T	chr1:2922146	0.068	0.056	0.147	1.63%
chr1_2922308_C_A	chr1:2922308	-0.027	-0.018	-0.147	<0.001%

Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.