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AGRN
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near AGRN
chr1:920,119..1,156,114, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr1_921261_C_G | chr1:921261 | 1.000 | 0.404 | 1.000 | — |
| chr1_921255_G_T | chr1:921255 | -0.693 | -0.388 | -1.000 | — |
| chr1_921208_C_G | chr1:921208 | -0.621 | -0.372 | -1.000 | — |
| chr1_921250_C_G | chr1:921250 | -0.649 | -0.415 | -1.000 | — |
| chr1_921255_G_A | chr1:921255 | -0.671 | -0.365 | -1.000 | — |
| chr1_921250_C_A | chr1:921250 | -0.631 | -0.396 | -1.000 | — |
| chr1_921256_G_T | chr1:921256 | -0.571 | -0.331 | -1.000 | — |
| chr1_921259_G_T | chr1:921259 | -0.627 | -0.350 | -1.000 | — |
| chr1_921254_A_T | chr1:921254 | -0.595 | -0.365 | -1.000 | — |
| chr1_921255_G_C | chr1:921255 | -0.661 | -0.371 | -1.000 | — |
| chr1_921258_G_A | chr1:921258 | -0.565 | -0.359 | -1.000 | — |
| chr1_921249_C_A | chr1:921249 | -0.631 | -0.359 | -1.000 | — |
| chr1_921250_C_T | chr1:921250 | -0.598 | -0.374 | -1.000 | — |
| chr1_921254_A_C | chr1:921254 | -0.598 | -0.372 | -1.000 | — |
| chr1_921249_C_G | chr1:921249 | -0.621 | -0.367 | -1.000 | — |
| chr1_921247_C_T | chr1:921247 | -0.587 | -0.272 | -1.000 | <0.001% |
| chr1_921194_C_G | chr1:921194 | 0.798 | 0.372 | 1.000 | — |
| chr1_921253_C_G | chr1:921253 | -0.532 | -0.350 | -1.000 | <0.001% |
| chr1_921258_G_C | chr1:921258 | -0.537 | -0.339 | -1.000 | — |
| chr1_921242_A_G | chr1:921242 | -0.522 | -0.294 | -1.000 | — |
| chr1_921254_A_G | chr1:921254 | -0.545 | -0.330 | -1.000 | — |
| chr1_921253_C_A | chr1:921253 | -0.511 | -0.331 | -1.000 | — |
| chr1_921249_C_T | chr1:921249 | -0.585 | -0.348 | -1.000 | — |
| chr1_921256_G_C | chr1:921256 | -0.527 | -0.313 | -1.000 | — |
| chr1_921251_A_C | chr1:921251 | -0.609 | -0.371 | -1.000 | — |
| chr1_921260_A_T | chr1:921260 | -0.540 | -0.265 | -1.000 | — |
| chr1_921259_G_C | chr1:921259 | -0.560 | -0.320 | -1.000 | — |
| chr1_921199_C_T | chr1:921199 | -0.526 | -0.294 | -1.000 | — |
| chr1_921205_C_G | chr1:921205 | -0.537 | -0.329 | -1.000 | 0.0013% |
| chr1_921196_T_G | chr1:921196 | 0.696 | 0.430 | 0.935 | — |
| chr1_921203_G_A | chr1:921203 | 0.696 | 0.305 | 0.824 | 1.52% |
| chr1_921258_G_T | chr1:921258 | -0.488 | -0.263 | -1.000 | 0.0033% |
| chr1_921198_C_T | chr1:921198 | -0.473 | -0.296 | -1.000 | 0.0033% |
| chr1_921199_C_G | chr1:921199 | -0.519 | -0.315 | -1.000 | — |
| chr1_921235_G_C | chr1:921235 | -0.578 | -0.297 | -1.000 | — |
| chr1_921252_G_T | chr1:921252 | -0.445 | -0.313 | -1.000 | — |
| chr1_921257_G_A | chr1:921257 | -0.483 | -0.279 | -1.000 | — |
| chr1_921201_C_A | chr1:921201 | -0.463 | -0.289 | -1.000 | — |
| chr1_921206_G_A | chr1:921206 | -0.562 | -0.310 | -1.000 | 0.0026% |
| chr1_921207_G_T | chr1:921207 | -0.547 | -0.282 | -1.000 | — |
| chr1_921198_C_A | chr1:921198 | -0.456 | -0.272 | -1.000 | — |
| chr1_921207_G_A | chr1:921207 | -0.539 | -0.268 | -1.000 | — |
| chr1_921206_G_T | chr1:921206 | -0.516 | -0.315 | -1.000 | 0.0033% |
| chr1_921257_G_C | chr1:921257 | -0.462 | -0.280 | -1.000 | — |
| chr1_921194_C_A | chr1:921194 | 0.631 | 0.301 | 0.841 | — |
| chr1_921197_C_A | chr1:921197 | -0.358 | -0.245 | -1.000 | <0.001% |
| chr1_921200_T_A | chr1:921200 | -0.462 | -0.303 | -1.000 | — |
| chr1_921202_T_A | chr1:921202 | -0.455 | -0.275 | -1.000 | <0.001% |
| chr1_921212_A_G | chr1:921212 | -0.400 | -0.236 | -1.000 | — |
| chr1_921197_C_T | chr1:921197 | -0.340 | -0.216 | -1.000 | — |
| chr1_921207_G_C | chr1:921207 | -0.532 | -0.277 | -1.000 | — |
| chr1_921198_C_G | chr1:921198 | -0.433 | -0.266 | -1.000 | — |
| chr1_921201_C_T | chr1:921201 | -0.453 | -0.263 | -1.000 | — |
| chr1_921257_G_T | chr1:921257 | -0.418 | -0.214 | -1.000 | — |
| chr1_921193_T_C | chr1:921193 | -0.399 | -0.216 | -1.000 | — |
| chr1_921202_T_G | chr1:921202 | -0.436 | -0.269 | -1.000 | — |
| chr1_921252_G_A | chr1:921252 | -0.396 | -0.277 | -1.000 | — |
| chr1_921259_G_A | chr1:921259 | -0.476 | -0.293 | -1.000 | — |
| chr1_921204_G_A | chr1:921204 | -0.426 | -0.274 | -1.000 | — |
| chr1_921246_G_A | chr1:921246 | -0.408 | -0.199 | -0.994 | — |
| chr1_921239_C_G | chr1:921239 | -0.410 | -0.247 | -0.982 | 0.0013% |
| chr1_921205_C_A | chr1:921205 | -0.422 | -0.269 | -0.971 | — |
| chr1_921199_C_A | chr1:921199 | -0.382 | -0.242 | -0.965 | — |
| chr1_921260_A_G | chr1:921260 | -0.411 | -0.236 | -0.965 | — |
| chr1_921236_C_G | chr1:921236 | -0.394 | -0.214 | -0.959 | — |
| chr1_921201_C_G | chr1:921201 | -0.392 | -0.239 | -0.941 | — |
| chr1_921200_T_G | chr1:921200 | -0.410 | -0.260 | -0.929 | — |
| chr1_921248_C_G | chr1:921248 | 0.526 | 0.234 | 0.776 | — |
| chr1_921251_A_T | chr1:921251 | -0.464 | -0.259 | -0.912 | — |
| chr1_921248_C_A | chr1:921248 | 0.507 | 0.259 | 0.765 | — |
| chr1_921202_T_C | chr1:921202 | -0.365 | -0.237 | -0.853 | <0.001% |
| chr1_921239_C_T | chr1:921239 | -0.417 | -0.207 | -0.847 | <0.001% |
| chr1_921263_C_A | chr1:921263 | -0.424 | -0.203 | -0.835 | — |
| chr1_921203_G_C | chr1:921203 | -0.456 | -0.227 | -0.829 | — |
| chr1_921219_C_G | chr1:921219 | -0.431 | -0.193 | -0.818 | — |
| chr1_921298_C_G | chr1:921298 | -0.319 | -0.115 | -0.812 | — |
| chr1_925001_C_T | chr1:925001 | 0.051 | 0.070 | 0.794 | <0.001% |
| chr1_921232_C_G | chr1:921232 | 0.448 | 0.194 | 0.576 | — |
| chr1_921196_T_C | chr1:921196 | -0.282 | -0.195 | -0.776 | — |
| chr1_921239_C_A | chr1:921239 | -0.395 | -0.208 | -0.776 | — |
| chr1_924987_C_T | chr1:924987 | 0.058 | 0.109 | 0.771 | <0.001% |
| chr1_921197_C_G | chr1:921197 | -0.254 | -0.181 | -0.747 | — |
| chr1_921310_G_A | chr1:921310 | 0.418 | 0.170 | 0.647 | 0.0039% |
| chr1_921204_G_T | chr1:921204 | -0.312 | -0.192 | -0.735 | — |
| chr1_921251_A_G | chr1:921251 | -0.373 | -0.218 | -0.718 | — |
| chr1_924110_C_A | chr1:924110 | 0.040 | 0.049 | 0.715 | <0.001% |
| chr1_921203_G_T | chr1:921203 | -0.337 | -0.178 | -0.694 | — |
| chr1_921208_C_A | chr1:921208 | -0.304 | -0.181 | -0.665 | — |
| chr1_921263_C_G | chr1:921263 | -0.371 | -0.187 | -0.647 | — |
| chr1_921235_G_T | chr1:921235 | -0.361 | -0.181 | -0.653 | — |
| chr1_924021_C_A | chr1:924021 | 0.255 | 0.044 | 0.650 | <0.001% |
| chr1_921206_G_C | chr1:921206 | -0.331 | -0.198 | -0.629 | — |
| chr1_921305_C_T | chr1:921305 | 0.353 | 0.129 | 0.353 | 0.0013% |
| chr1_921256_G_A | chr1:921256 | -0.298 | -0.187 | -0.612 | — |
| chr1_921262_C_G | chr1:921262 | -0.323 | -0.174 | -0.612 | — |
| chr1_921266_A_G | chr1:921266 | -0.252 | -0.098 | -0.606 | — |
| chr1_921220_T_C | chr1:921220 | -0.232 | -0.140 | -0.600 | — |
| chr1_921298_C_T | chr1:921298 | -0.276 | -0.081 | -0.600 | <0.001% |
| chr1_921294_C_G | chr1:921294 | 0.333 | 0.112 | 0.365 | — |
| chr1_924277_C_A | chr1:924277 | 0.152 | 0.054 | 0.588 | <0.001% |
| chr1_921246_G_C | chr1:921246 | 0.328 | 0.176 | 0.471 | — |
| chr1_921172_G_C | chr1:921172 | -0.231 | -0.124 | -0.576 | — |
| chr1_921262_C_A | chr1:921262 | -0.300 | -0.150 | -0.576 | — |
| chr1_924958_C_A | chr1:924958 | 0.046 | 0.059 | 0.576 | <0.001% |
| chr1_921209_G_T | chr1:921209 | -0.250 | -0.156 | -0.565 | 0.0013% |
| chr1_923891_G_C | chr1:923891 | 0.153 | 0.049 | 0.565 | <0.001% |
| chr1_921221_C_G | chr1:921221 | 0.317 | 0.211 | 0.553 | — |
| chr1_924270_C_A | chr1:924270 | 0.079 | 0.037 | 0.559 | <0.001% |
| chr1_921267_G_C | chr1:921267 | -0.314 | -0.110 | -0.471 | — |
| chr1_924288_C_T | chr1:924288 | 0.054 | 0.037 | 0.547 | 0.0013% |
| chr1_924320_G_T | chr1:924320 | 0.007 | 0.043 | 0.544 | <0.001% |
| chr1_921149_G_A | chr1:921149 | 0.197 | 0.043 | 0.541 | <0.001% |
| chr1_923865_C_A | chr1:923865 | 0.029 | 0.059 | 0.541 | <0.001% |
| chr1_930878_G_A | chr1:930878 | 0.246 | 0.248 | 0.538 | 0.0099% |
| chr1_921296_G_T | chr1:921296 | -0.303 | -0.090 | -0.447 | — |
| chr1_924329_C_T | chr1:924329 | 0.043 | 0.043 | 0.532 | <0.001% |
| chr1_921298_C_A | chr1:921298 | -0.271 | -0.084 | -0.529 | — |
| chr1_924983_C_T | chr1:924983 | 0.030 | 0.057 | 0.529 | 0.173% |
| chr1_924988_C_G | chr1:924988 | 0.060 | 0.095 | 0.524 | <0.001% |
| chr1_921210_G_T | chr1:921210 | -0.226 | -0.159 | -0.518 | — |
| chr1_921277_A_G | chr1:921277 | -0.245 | -0.069 | -0.518 | — |
| chr1_921330_A_G | chr1:921330 | -0.231 | -0.060 | -0.518 | <0.001% |
| chr1_924034_G_A | chr1:924034 | 0.019 | 0.034 | 0.509 | 0.0027% |
| chr1_921286_G_C | chr1:921286 | 0.150 | 0.056 | 0.506 | — |
| chr1_921196_T_A | chr1:921196 | -0.204 | -0.124 | -0.500 | 0.0020% |
| chr1_921208_C_T | chr1:921208 | -0.237 | -0.119 | -0.500 | 0.0013% |
| chr1_921261_C_T | chr1:921261 | -0.198 | -0.123 | -0.500 | — |
| chr1_921296_G_A | chr1:921296 | -0.283 | -0.077 | -0.482 | — |
| chr1_921311_G_A | chr1:921311 | 0.283 | 0.110 | 0.424 | <0.001% |
| chr1_921237_G_A | chr1:921237 | -0.205 | -0.105 | -0.488 | 0.0033% |
| chr1_921237_G_C | chr1:921237 | -0.222 | -0.122 | -0.488 | — |
| chr1_921275_A_T | chr1:921275 | -0.276 | -0.093 | -0.435 | — |
| chr1_921297_G_T | chr1:921297 | -0.275 | -0.079 | -0.435 | — |
| chr1_924130_G_A | chr1:924130 | 0.070 | 0.031 | 0.485 | <0.001% |
| chr1_921195_C_A | chr1:921195 | 0.098 | -0.004 | 0.482 | — |
| chr1_921245_G_T | chr1:921245 | 0.210 | 0.159 | 0.482 | — |
| chr1_921306_G_T | chr1:921306 | 0.271 | 0.113 | 0.329 | <0.001% |
| chr1_923866_C_T | chr1:923866 | 0.046 | 0.049 | 0.479 | <0.001% |
| chr1_921238_G_C | chr1:921238 | -0.270 | -0.133 | -0.471 | — |
| chr1_921210_G_C | chr1:921210 | -0.212 | -0.143 | -0.476 | — |
| chr1_921294_C_T | chr1:921294 | 0.270 | 0.113 | 0.318 | — |
| chr1_921297_G_A | chr1:921297 | -0.268 | -0.077 | -0.412 | — |
| chr1_921195_C_T | chr1:921195 | -0.208 | -0.122 | -0.471 | — |
| chr1_921295_A_T | chr1:921295 | -0.266 | -0.053 | -0.294 | — |
| chr1_921295_A_C | chr1:921295 | -0.261 | -0.061 | -0.235 | — |
| chr1_924136_G_A | chr1:924136 | 0.149 | 0.035 | 0.459 | <0.001% |
| chr1_924306_C_T | chr1:924306 | 0.048 | 0.028 | 0.456 | <0.001% |
| chr1_921233_C_A | chr1:921233 | -0.252 | -0.121 | -0.453 | — |
| chr1_921264_G_A | chr1:921264 | 0.255 | 0.112 | 0.294 | 0.0026% |
| chr1_923828_A_C | chr1:923828 | -0.017 | -0.054 | -0.450 | <0.001% |
| chr1_921221_C_A | chr1:921221 | 0.254 | 0.187 | 0.447 | — |
| chr1_921296_G_C | chr1:921296 | -0.253 | -0.067 | -0.188 | — |
| chr1_921271_C_G | chr1:921271 | -0.251 | -0.080 | -0.318 | — |
| chr1_921314_G_A | chr1:921314 | -0.250 | -0.057 | -0.376 | 0.0033% |
| chr1_923863_A_C | chr1:923863 | -0.023 | -0.042 | -0.438 | <0.001% |
| chr1_925056_T_C | chr1:925056 | -0.058 | -0.056 | -0.438 | 0.0053% |
| chr1_921292_G_C | chr1:921292 | -0.247 | -0.080 | -0.294 | — |
| chr1_921215_C_T | chr1:921215 | -0.153 | -0.091 | -0.435 | — |
| chr1_921297_G_C | chr1:921297 | -0.243 | -0.072 | -0.329 | — |
| chr1_923860_G_A | chr1:923860 | 0.022 | 0.045 | 0.429 | 0.812% |
| chr1_924320_G_A | chr1:924320 | 0.013 | 0.033 | 0.426 | 0.0054% |
| chr1_921238_G_T | chr1:921238 | -0.195 | -0.112 | -0.424 | — |
| chr1_921245_G_C | chr1:921245 | 0.156 | 0.091 | 0.424 | — |
| chr1_924134_G_A | chr1:924134 | 0.061 | 0.033 | 0.424 | 0.0013% |
| chr1_924305_G_A | chr1:924305 | 0.042 | 0.038 | 0.424 | 17.2% |
| chr1_921247_C_A | chr1:921247 | -0.239 | -0.102 | -0.388 | — |
| chr1_924072_C_A | chr1:924072 | 0.032 | 0.028 | 0.421 | 0.0033% |
| chr1_924094_G_A | chr1:924094 | 0.032 | 0.032 | 0.418 | 0.0040% |
| chr1_921302_G_T | chr1:921302 | -0.235 | -0.056 | -0.294 | — |
| chr1_921216_A_T | chr1:921216 | -0.194 | -0.107 | -0.412 | <0.001% |
| chr1_921253_C_T | chr1:921253 | -0.186 | -0.114 | -0.412 | — |
| chr1_924117_G_A | chr1:924117 | 0.055 | 0.032 | 0.409 | 0.0013% |
| chr1_921213_G_T | chr1:921213 | -0.181 | -0.113 | -0.406 | — |
| chr1_921263_C_T | chr1:921263 | -0.230 | -0.100 | -0.306 | <0.001% |
| chr1_924314_C_T | chr1:924314 | 0.032 | 0.029 | 0.406 | <0.001% |
| chr1_924981_C_G | chr1:924981 | 0.060 | 0.081 | 0.406 | 0.0013% |
| chr1_924299_G_A | chr1:924299 | 0.036 | 0.031 | 0.403 | 0.0013% |
| chr1_921244_G_A | chr1:921244 | 0.168 | 0.077 | 0.400 | <0.001% |
| chr1_923876_C_T | chr1:923876 | 0.055 | 0.032 | 0.397 | <0.001% |
| chr1_925003_T_G | chr1:925003 | -0.033 | -0.039 | -0.397 | <0.001% |
| chr1_921234_A_C | chr1:921234 | -0.176 | -0.104 | -0.394 | — |
| chr1_923982_G_T | chr1:923982 | 0.034 | 0.030 | 0.394 | <0.001% |
| chr1_921236_C_A | chr1:921236 | -0.176 | -0.075 | -0.388 | — |
| chr1_921240_G_T | chr1:921240 | -0.195 | -0.103 | -0.388 | — |
| chr1_924074_G_A | chr1:924074 | 0.048 | 0.030 | 0.388 | 0.011% |
| chr1_923858_G_A | chr1:923858 | 0.011 | 0.040 | 0.385 | <0.001% |
| chr1_923875_C_T | chr1:923875 | 0.051 | 0.032 | 0.382 | <0.001% |
| chr1_924124_G_A | chr1:924124 | 0.031 | 0.027 | 0.382 | <0.001% |
| chr1_921124_C_G | chr1:921124 | 0.210 | 0.132 | 0.235 | <0.001% |
| chr1_923864_G_A | chr1:923864 | 0.014 | 0.041 | 0.371 | <0.001% |
| chr1_924002_C_A | chr1:924002 | 0.057 | 0.032 | 0.371 | <0.001% |
| chr1_924275_G_A | chr1:924275 | 0.040 | 0.030 | 0.371 | 0.0040% |
| chr1_921267_G_T | chr1:921267 | -0.208 | -0.055 | -0.294 | — |
| chr1_924323_T_G | chr1:924323 | -0.045 | -0.026 | -0.368 | 0.018% |
| chr1_921204_G_C | chr1:921204 | -0.160 | -0.109 | -0.365 | — |
| chr1_921230_G_C | chr1:921230 | -0.151 | -0.052 | -0.365 | — |
| chr1_921264_G_T | chr1:921264 | -0.163 | -0.065 | -0.365 | — |
| chr1_924279_C_T | chr1:924279 | 0.043 | 0.024 | 0.365 | 0.021% |
| chr1_924200_A_G | chr1:924200 | -0.205 | -0.020 | -0.250 | <0.001% |
| chr1_921240_G_C | chr1:921240 | -0.205 | -0.109 | -0.341 | — |
Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.