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CDH12

This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.

Scored variants near CDH12

chr5:21,650,675..22,953,344, gene body plus 100 kb. Showing the strongest 200 by effect size.

Variant	Position	PXR	FXR	AhR	AF
chr5_21919616_C_T	chr5:21919616	-0.982	-0.602	-0.609	<0.001%
chr5_21814052_G_A	chr5:21814052	0.940	0.464	0.402	<0.001%
chr5_21814087_T_C	chr5:21814087	0.924	0.518	0.378	0.0013%
chr5_21919625_T_C	chr5:21919625	-0.741	-0.287	-0.483	<0.001%
chr5_22212803_C_G	chr5:22212803	-0.538	-0.404	-0.603	<0.001%
chr5_21814088_G_A	chr5:21814088	-0.505	-0.332	-0.218	<0.001%
chr5_21813997_C_G	chr5:21813997	0.493	0.355	0.264	<0.001%
chr5_21814031_A_C	chr5:21814031	-0.488	-0.330	-0.250	<0.001%
chr5_22212798_A_G	chr5:22212798	-0.478	-0.538	-0.491	<0.001%
chr5_21814071_A_G	chr5:21814071	-0.425	-0.265	-0.186	<0.001%
chr5_22214278_T_C	chr5:22214278	-0.406	-0.208	-0.335	0.0046%
chr5_22853057_C_T	chr5:22853057	0.369	0.193	0.306	<0.001%
chr5_21814018_G_A	chr5:21814018	-0.366	-0.294	-0.186	0.0020%
chr5_21814037_C_A	chr5:21814037	-0.341	-0.195	-0.167	<0.001%
chr5_22214279_C_A	chr5:22214279	-0.338	-0.209	-0.324	0.0046%
chr5_22214279_C_G	chr5:22214279	-0.333	-0.169	-0.309	0.049%
chr5_22214277_C_T	chr5:22214277	-0.324	-0.209	-0.315	<0.001%
chr5_21919628_C_T	chr5:21919628	-0.323	-0.063	-0.164	0.0013%
chr5_21813993_T_C	chr5:21813993	-0.321	-0.203	-0.147	<0.001%
chr5_21813998_A_G	chr5:21813998	0.312	0.264	0.227	<0.001%
chr5_21919601_A_G	chr5:21919601	-0.301	-0.183	-0.164	0.693%
chr5_21814037_C_G	chr5:21814037	-0.296	-0.138	-0.110	<0.001%
chr5_22212883_C_A	chr5:22212883	0.295	0.246	0.174	<0.001%
chr5_21813932_C_A	chr5:21813932	0.275	-0.051	0.174	0.0013%
chr5_21814081_A_G	chr5:21814081	-0.275	-0.099	-0.076	<0.001%
chr5_22852867_G_C	chr5:22852867	0.230	0.169	0.438	<0.001%
chr5_22853392_A_G	chr5:22853392	-0.232	-0.025	-0.335	<0.001%
chr5_21813960_G_C	chr5:21813960	0.220	0.170	0.119	0.0013%
chr5_21814035_A_G	chr5:21814035	-0.218	-0.195	-0.101	<0.001%
chr5_22212738_C_G	chr5:22212738	-0.215	-0.195	-0.172	<0.001%
chr5_22214273_C_G	chr5:22214273	-0.210	-0.157	-0.230	0.0066%
chr5_22214273_C_T	chr5:22214273	-0.206	-0.138	-0.212	0.0039%
chr5_22212746_G_C	chr5:22212746	-0.205	-0.157	-0.216	<0.001%
chr5_21813990_C_T	chr5:21813990	0.200	0.038	0.025	24.4%
chr5_22214304_C_G	chr5:22214304	0.197	0.038	0.084	90.9%
chr5_22853338_C_G	chr5:22853338	-0.196	-0.023	-0.188	0.0026%
chr5_22853426_G_T	chr5:22853426	-0.188	-0.132	-0.268	0.0026%
chr5_22212675_C_T	chr5:22212675	-0.174	-0.107	-0.196	<0.001%
chr5_22853105_A_G	chr5:22853105	0.173	-0.008	0.144	0.0013%
chr5_22212815_G_C	chr5:22212815	0.171	0.102	0.188	<0.001%
chr5_22853156_T_C	chr5:22853156	0.170	0.091	0.247	0.0020%
chr5_22212894_G_C	chr5:22212894	0.168	0.102	0.165	<0.001%
chr5_22853058_C_A	chr5:22853058	0.160	0.170	0.241	<0.001%
chr5_21814115_A_G	chr5:21814115	0.158	0.081	0.091	0.0013%
chr5_22214243_A_G	chr5:22214243	0.156	0.122	0.199	37.6%
chr5_22212859_T_A	chr5:22212859	0.155	0.089	0.100	0.0026%
chr5_21663270_C_T	chr5:21663270	0.084	0.145	0.272	0.0020%
chr5_21919627_A_T	chr5:21919627	-0.154	-0.036	-0.103	0.0020%
chr5_21919596_C_A	chr5:21919596	-0.153	-0.013	-0.076	<0.001%
chr5_21813929_G_A	chr5:21813929	-0.150	-0.109	-0.126	<0.001%
chr5_22212572_G_A	chr5:22212572	0.150	0.008	0.144	<0.001%
chr5_21663275_G_A	chr5:21663275	-0.073	-0.062	-0.259	<0.001%
chr5_21813928_C_T	chr5:21813928	-0.143	-0.086	-0.113	0.0072%
chr5_22212846_G_T	chr5:22212846	-0.142	-0.048	-0.169	<0.001%
chr5_22853427_C_T	chr5:22853427	-0.140	-0.124	-0.251	<0.001%
chr5_22852884_C_A	chr5:22852884	0.141	0.096	0.147	0.0013%
chr5_22853425_C_G	chr5:22853425	-0.100	-0.127	-0.243	0.0026%
chr5_22212918_A_G	chr5:22212918	0.135	0.104	0.129	<0.001%
chr5_22212870_C_G	chr5:22212870	-0.131	-0.058	-0.071	<0.001%
chr5_21919686_A_C	chr5:21919686	0.129	0.069	0.103	0.0013%
chr5_21919597_G_A	chr5:21919597	-0.128	0.020	-0.082	0.070%
chr5_21919596_C_T	chr5:21919596	-0.125	-0.013	-0.087	0.0072%
chr5_22853322_C_T	chr5:22853322	0.100	-0.051	0.221	<0.001%
chr5_22853054_T_G	chr5:22853054	0.120	0.069	0.159	<0.001%
chr5_21813974_T_A	chr5:21813974	-0.117	-0.069	-0.079	<0.001%
chr5_22094368_G_T	chr5:22094368	-0.110	-0.057	-0.207	0.030%
chr5_22212627_G_T	chr5:22212627	0.117	0.043	0.160	<0.001%
chr5_22853323_A_G	chr5:22853323	0.100	0.008	0.206	<0.001%
chr5_22853460_A_G	chr5:22853460	0.095	0.081	0.201	<0.001%
chr5_22853146_C_T	chr5:22853146	0.113	0.079	0.100	<0.001%
chr5_21919602_G_T	chr5:21919602	-0.110	-0.033	-0.059	<0.001%
chr5_22853400_C_G	chr5:22853400	0.095	0.015	0.194	<0.001%
chr5_21919579_A_C	chr5:21919579	0.108	-0.008	0.081	0.0013%
chr5_22212829_C_T	chr5:22212829	-0.108	-0.071	-0.162	<0.001%
chr5_21813967_G_A	chr5:21813967	-0.107	-0.061	-0.048	0.0013%
chr5_22214292_G_A	chr5:22214292	-0.107	-0.048	-0.088	<0.001%
chr5_22214302_G_A	chr5:22214302	0.106	0.048	0.059	<0.001%
chr5_21729934_T_C	chr5:21729934	0.105	0.081	0.103	<0.001%
chr5_22853385_C_G	chr5:22853385	-0.105	-0.015	-0.179	<0.001%
chr5_22853386_G_A	chr5:22853386	-0.083	-0.036	-0.182	<0.001%
chr5_22212806_G_A	chr5:22212806	-0.097	-0.099	-0.179	0.0033%
chr5_22214263_G_A	chr5:22214263	0.101	0.025	0.063	0.0020%
chr5_22853410_C_T	chr5:22853410	0.072	0.086	0.179	0.0059%
chr5_22853399_C_T	chr5:22853399	-0.101	-0.023	-0.174	<0.001%
chr5_22853338_C_A	chr5:22853338	-0.100	0.000	-0.091	0.0026%
chr5_22852890_C_A	chr5:22852890	-0.072	-0.102	-0.174	<0.001%
chr5_21663269_C_A	chr5:21663269	-0.063	-0.060	-0.172	0.0026%
chr5_21814086_A_G	chr5:21814086	-0.097	-0.043	-0.039	<0.001%
chr5_22853128_T_G	chr5:22853128	0.097	0.036	0.126	<0.001%
chr5_21814020_G_T	chr5:21814020	-0.094	-0.090	-0.053	<0.001%
chr5_22853344_T_C	chr5:22853344	0.093	0.010	0.126	5.36%
chr5_21813982_T_A	chr5:21813982	-0.092	-0.096	-0.052	<0.001%
chr5_21919666_T_A	chr5:21919666	0.092	0.013	-0.003	<0.001%
chr5_21814045_T_A	chr5:21814045	-0.090	0.043	-0.035	7.46%
chr5_22853377_G_T	chr5:22853377	-0.088	-0.038	-0.156	0.0013%
chr5_21813994_C_T	chr5:21813994	-0.087	0.025	0.008	<0.001%
chr5_21663260_C_A	chr5:21663260	-0.050	-0.043	-0.151	0.0013%
chr5_21813973_T_C	chr5:21813973	-0.086	-0.058	-0.054	0.011%
chr5_22214237_C_G	chr5:22214237	0.086	0.013	0.112	<0.001%
chr5_22853140_T_G	chr5:22853140	-0.052	0.071	0.150	0.023%
chr5_22853378_C_G	chr5:22853378	-0.085	-0.030	-0.126	0.019%
chr5_21919517_T_G	chr5:21919517	-0.083	-0.043	-0.018	<0.001%
chr5_21919518_G_A	chr5:21919518	-0.083	-0.015	-0.053	0.025%
chr5_21919670_G_A	chr5:21919670	-0.083	0.005	-0.082	0.0059%
chr5_21919576_C_T	chr5:21919576	-0.082	-0.003	-0.090	<0.001%
chr5_21663295_C_G	chr5:21663295	0.052	0.048	0.144	<0.001%
chr5_21813943_G_A	chr5:21813943	-0.081	-0.020	-0.065	0.0013%
chr5_22853092_C_T	chr5:22853092	0.067	0.069	0.141	0.0013%
chr5_22853099_G_A	chr5:22853099	0.080	0.099	0.056	<0.001%
chr5_21919606_T_C	chr5:21919606	0.079	-0.003	0.018	<0.001%
chr5_21919669_C_T	chr5:21919669	-0.079	0.013	-0.065	<0.001%
chr5_22212725_G_A	chr5:22212725	0.062	0.122	0.140	0.039%
chr5_21663285_G_A	chr5:21663285	-0.050	-0.038	-0.138	<0.001%
chr5_22212548_C_T	chr5:22212548	0.078	0.023	0.103	<0.001%
chr5_22853207_G_A	chr5:22853207	-0.078	-0.053	-0.118	<0.001%
chr5_22214219_A_G	chr5:22214219	-0.077	-0.013	-0.026	<0.001%
chr5_22853403_G_A	chr5:22853403	-0.077	-0.030	-0.094	0.0039%
chr5_21814116_A_G	chr5:21814116	-0.076	-0.046	-0.016	<0.001%
chr5_22212746_G_A	chr5:22212746	-0.060	-0.053	-0.132	0.0046%
chr5_22853046_C_A	chr5:22853046	-0.075	-0.052	-0.106	<0.001%
chr5_22212853_G_C	chr5:22212853	-0.070	-0.041	-0.129	<0.001%
chr5_22853036_C_A	chr5:22853036	0.073	0.051	0.082	0.428%
chr5_22853310_T_C	chr5:22853310	0.073	0.015	0.074	<0.001%
chr5_22212699_G_A	chr5:22212699	-0.072	-0.048	-0.082	0.0053%
chr5_22212846_G_C	chr5:22212846	-0.072	0.048	-0.093	<0.001%
chr5_22214261_A_G	chr5:22214261	-0.072	-0.063	-0.052	0.055%
chr5_21813950_G_A	chr5:21813950	-0.070	-0.046	-0.059	0.0026%
chr5_21813992_A_G	chr5:21813992	0.070	0.096	0.107	0.0020%
chr5_22853004_C_G	chr5:22853004	0.050	0.023	0.124	<0.001%
chr5_22853164_C_G	chr5:22853164	0.063	0.076	0.124	<0.001%
chr5_22853265_G_A	chr5:22853265	-0.030	-0.030	-0.124	<0.001%
chr5_21919677_C_G	chr5:21919677	-0.069	0.005	-0.029	<0.001%
chr5_22212661_T_A	chr5:22212661	0.068	0.091	0.085	<0.001%
chr5_22212822_C_G	chr5:22212822	0.068	-0.063	0.106	0.0013%
chr5_22214291_G_A	chr5:22214291	-0.068	-0.025	-0.065	<0.001%
chr5_22853020_A_G	chr5:22853020	0.038	0.005	0.121	0.0039%
chr5_22853267_A_G	chr5:22853267	-0.068	-0.069	-0.097	<0.001%
chr5_21919575_T_C	chr5:21919575	0.067	0.033	0.041	0.0013%
chr5_22212526_G_T	chr5:22212526	-0.057	0.023	-0.119	<0.001%
chr5_21919593_C_G	chr5:21919593	-0.067	-0.018	0.032	<0.001%
chr5_22853402_A_C	chr5:22853402	-0.067	-0.015	-0.082	0.0020%
chr5_22094420_T_C	chr5:22094420	0.066	0.028	0.037	—
chr5_21919644_A_G	chr5:21919644	-0.065	0.000	-0.018	<0.001%
chr5_22853065_C_A	chr5:22853065	-0.045	-0.033	-0.115	<0.001%
chr5_22214245_G_A	chr5:22214245	0.064	0.033	0.017	<0.001%
chr5_21919554_C_T	chr5:21919554	-0.063	-0.046	-0.004	<0.001%
chr5_22094368_G_A	chr5:22094368	-0.063	-0.015	-0.101	<0.001%
chr5_22853116_A_G	chr5:22853116	0.063	0.030	0.103	<0.001%
chr5_21919631_A_G	chr5:21919631	0.062	0.020	0.022	<0.001%
chr5_21919663_G_A	chr5:21919663	-0.062	-0.005	-0.032	<0.001%
chr5_22212565_G_C	chr5:22212565	-0.062	-0.051	-0.099	<0.001%
chr5_22212692_T_C	chr5:22212692	0.062	0.025	0.094	0.0026%
chr5_22853024_G_C	chr5:22853024	-0.062	-0.038	-0.085	<0.001%
chr5_22853160_T_G	chr5:22853160	-0.062	-0.104	-0.062	<0.001%
chr5_22853394_G_A	chr5:22853394	0.062	0.046	0.059	0.0033%
chr5_22853445_G_A	chr5:22853445	-0.061	-0.033	-0.066	0.0013%
chr5_22853459_C_A	chr5:22853459	0.061	0.058	0.081	<0.001%
chr5_22212846_G_A	chr5:22212846	-0.060	0.048	-0.104	<0.001%
chr5_21663295_C_A	chr5:21663295	0.054	0.044	0.103	0.0020%
chr5_21663297_T_C	chr5:21663297	-0.039	-0.048	-0.103	0.0059%
chr5_22853353_A_G	chr5:22853353	-0.058	0.028	-0.015	<0.001%
chr5_21814020_G_A	chr5:21814020	-0.057	-0.036	-0.038	0.0013%
chr5_21919673_G_A	chr5:21919673	-0.057	0.000	-0.019	0.0066%
chr5_22212676_C_A	chr5:22212676	-0.057	-0.015	-0.100	<0.001%
chr5_22212816_A_G	chr5:22212816	0.057	-0.061	0.012	0.0046%
chr5_22852898_C_T	chr5:22852898	-0.057	-0.037	-0.075	0.0013%
chr5_22853381_G_A	chr5:22853381	-0.050	-0.015	-0.100	0.0013%
chr5_22094423_A_C	chr5:22094423	0.056	0.009	0.029	—
chr5_21919517_T_C	chr5:21919517	-0.056	-0.023	0.012	0.056%
chr5_21919647_A_G	chr5:21919647	0.056	0.000	0.041	<0.001%
chr5_22212695_A_G	chr5:22212695	0.016	-0.018	0.099	<0.001%
chr5_21663277_T_C	chr5:21663277	0.025	0.025	0.097	<0.001%
chr5_21919678_G_A	chr5:21919678	-0.055	0.005	-0.044	0.0013%
chr5_22212703_T_C	chr5:22212703	-0.055	-0.058	-0.066	0.544%
chr5_22853127_C_T	chr5:22853127	-0.055	-0.003	-0.056	0.0026%
chr5_22853144_A_C	chr5:22853144	0.040	0.056	0.097	0.0046%
chr5_22853355_C_A	chr5:22853355	-0.053	-0.018	-0.097	<0.001%
chr5_22214220_C_A	chr5:22214220	-0.054	-0.013	-0.033	0.0039%
chr5_22212526_G_A	chr5:22212526	-0.043	-0.005	-0.094	<0.001%
chr5_22853025_C_T	chr5:22853025	0.053	-0.008	0.024	<0.001%
chr5_21813960_G_A	chr5:21813960	-0.052	-0.018	-0.040	<0.001%
chr5_21919657_A_G	chr5:21919657	0.052	0.005	0.044	<0.001%
chr5_21919577_G_T	chr5:21919577	-0.052	-0.028	-0.081	0.0046%
chr5_22212619_C_T	chr5:22212619	-0.036	0.003	-0.091	<0.001%
chr5_22852889_G_A	chr5:22852889	-0.037	-0.037	-0.091	<0.001%
chr5_22853181_C_T	chr5:22853181	-0.018	0.020	0.091	<0.001%
chr5_22853373_A_G	chr5:22853373	0.042	0.018	0.091	0.0026%
chr5_21813959_T_C	chr5:21813959	0.051	0.058	0.082	<0.001%
chr5_22212818_C_T	chr5:22212818	0.050	0.041	0.015	0.0059%
chr5_22212862_C_G	chr5:22212862	0.050	0.046	0.041	0.0033%
chr5_22212898_A_G	chr5:22212898	0.050	0.038	0.056	0.0026%
chr5_22853266_G_C	chr5:22853266	-0.022	-0.015	-0.088	<0.001%
chr5_22212785_C_T	chr5:22212785	-0.049	0.003	-0.034	<0.001%
chr5_22214267_A_T	chr5:22214267	0.049	0.005	0.028	<0.001%
chr5_21813997_C_T	chr5:21813997	0.048	-0.010	-0.040	0.0020%
chr5_22212581_C_G	chr5:22212581	-0.033	0.008	-0.085	0.014%
chr5_22212829_C_A	chr5:22212829	-0.029	0.147	-0.056	<0.001%
chr5_21663184_C_A	chr5:21663184	0.047	0.013	0.037	0.0013%
chr5_21663236_A_C	chr5:21663236	-0.047	-0.069	-0.065	0.0020%
chr5_22212886_G_A	chr5:22212886	0.047	0.028	0.050	0.0013%

Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.