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CNTN3
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near CNTN3
chr3:74,162,568..74,621,140, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr3_74409096_G_C | chr3:74409096 | 0.459 | 0.236 | 0.237 | — |
| chr3_74409146_A_C | chr3:74409146 | 0.373 | 0.338 | 0.266 | — |
| chr3_74409144_A_T | chr3:74409144 | 0.357 | 0.340 | 0.276 | — |
| chr3_74175519_G_C | chr3:74175519 | 0.293 | 0.121 | 0.325 | — |
| chr3_74409140_T_G | chr3:74409140 | 0.284 | 0.228 | 0.265 | — |
| chr3_74409140_T_A | chr3:74409140 | 0.277 | 0.241 | 0.200 | — |
| chr3_74409092_C_G | chr3:74409092 | 0.270 | 0.226 | 0.188 | — |
| chr3_74409138_T_G | chr3:74409138 | 0.253 | 0.231 | 0.204 | — |
| chr3_74409146_A_T | chr3:74409146 | 0.243 | 0.198 | 0.146 | — |
| chr3_74409144_A_C | chr3:74409144 | 0.235 | 0.198 | 0.224 | — |
| chr3_74409126_C_G | chr3:74409126 | 0.225 | 0.201 | 0.068 | — |
| chr3_74409093_T_A | chr3:74409093 | 0.213 | 0.190 | 0.112 | — |
| chr3_74409092_C_A | chr3:74409092 | 0.208 | 0.183 | 0.138 | — |
| chr3_74409145_G_A | chr3:74409145 | 0.206 | 0.197 | 0.153 | — |
| chr3_74409121_C_T | chr3:74409121 | 0.201 | 0.217 | 0.093 | 0.0013% |
| chr3_74409146_A_G | chr3:74409146 | 0.199 | 0.188 | 0.166 | — |
| chr3_74409132_A_C | chr3:74409132 | 0.197 | 0.132 | 0.144 | — |
| chr3_74409130_T_C | chr3:74409130 | 0.190 | 0.109 | 0.075 | <0.001% |
| chr3_74409145_G_C | chr3:74409145 | 0.187 | 0.168 | 0.137 | — |
| chr3_74409091_T_A | chr3:74409091 | 0.182 | 0.131 | 0.084 | — |
| chr3_74409148_C_A | chr3:74409148 | -0.162 | -0.168 | -0.143 | <0.001% |
| chr3_74409147_C_G | chr3:74409147 | 0.161 | 0.124 | 0.091 | — |
| chr3_74409112_A_T | chr3:74409112 | -0.159 | -0.150 | -0.084 | — |
| chr3_74409135_C_A | chr3:74409135 | -0.156 | -0.128 | -0.143 | — |
| chr3_74409109_T_G | chr3:74409109 | -0.156 | -0.145 | -0.088 | — |
| chr3_74409144_A_G | chr3:74409144 | 0.152 | 0.137 | 0.138 | — |
| chr3_74409131_G_C | chr3:74409131 | 0.149 | 0.114 | 0.029 | — |
| chr3_74409091_T_C | chr3:74409091 | 0.146 | 0.099 | 0.099 | — |
| chr3_74409109_T_A | chr3:74409109 | -0.144 | -0.138 | -0.101 | — |
| chr3_74409092_C_T | chr3:74409092 | 0.142 | 0.150 | 0.121 | — |
| chr3_74409107_A_C | chr3:74409107 | -0.138 | -0.128 | -0.065 | — |
| chr3_74409143_G_A | chr3:74409143 | -0.138 | -0.126 | -0.113 | — |
| chr3_74409141_C_T | chr3:74409141 | -0.135 | -0.132 | -0.122 | — |
| chr3_74409141_C_G | chr3:74409141 | 0.131 | 0.132 | 0.096 | — |
| chr3_74409112_A_C | chr3:74409112 | -0.126 | -0.128 | -0.053 | — |
| chr3_74409152_G_A | chr3:74409152 | -0.126 | -0.099 | -0.078 | — |
| chr3_74409093_T_G | chr3:74409093 | 0.125 | 0.127 | 0.106 | — |
| chr3_74409102_G_C | chr3:74409102 | -0.124 | -0.112 | -0.090 | — |
| chr3_74409124_T_G | chr3:74409124 | 0.124 | 0.091 | 0.050 | — |
| chr3_74409083_T_C | chr3:74409083 | 0.122 | 0.109 | 0.068 | — |
| chr3_74409138_T_A | chr3:74409138 | 0.121 | 0.099 | 0.082 | — |
| chr3_74409112_A_G | chr3:74409112 | -0.120 | -0.126 | -0.059 | — |
| chr3_74409094_T_A | chr3:74409094 | 0.119 | 0.094 | 0.068 | — |
| chr3_74409140_T_C | chr3:74409140 | 0.118 | 0.112 | 0.109 | — |
| chr3_74409145_G_T | chr3:74409145 | 0.118 | 0.126 | 0.059 | — |
| chr3_74409143_G_T | chr3:74409143 | -0.116 | -0.107 | -0.097 | — |
| chr3_74409094_T_G | chr3:74409094 | 0.115 | 0.114 | 0.065 | — |
| chr3_74409124_T_C | chr3:74409124 | -0.111 | -0.096 | -0.065 | <0.001% |
| chr3_74409152_G_C | chr3:74409152 | -0.111 | -0.100 | -0.078 | — |
| chr3_74409123_A_C | chr3:74409123 | -0.109 | -0.103 | -0.062 | — |
| chr3_74409133_G_C | chr3:74409133 | 0.109 | 0.084 | 0.069 | — |
| chr3_74409093_T_C | chr3:74409093 | 0.108 | 0.095 | 0.076 | — |
| chr3_74409089_G_T | chr3:74409089 | -0.103 | -0.072 | -0.079 | — |
| chr3_74409156_T_A | chr3:74409156 | -0.103 | -0.048 | 0.003 | — |
| chr3_74409150_G_C | chr3:74409150 | -0.101 | -0.084 | -0.041 | — |
| chr3_74409129_C_T | chr3:74409129 | -0.101 | -0.118 | -0.144 | — |
| chr3_74409088_T_C | chr3:74409088 | 0.098 | 0.086 | 0.049 | — |
| chr3_74409116_G_C | chr3:74409116 | 0.097 | 0.084 | 0.053 | — |
| chr3_74409116_G_A | chr3:74409116 | 0.097 | 0.114 | 0.038 | — |
| chr3_74409083_T_A | chr3:74409083 | 0.095 | 0.088 | 0.053 | — |
| chr3_74409130_T_G | chr3:74409130 | 0.095 | -0.010 | -0.019 | — |
| chr3_74409082_T_A | chr3:74409082 | 0.094 | 0.085 | 0.044 | — |
| chr3_74409136_T_C | chr3:74409136 | 0.094 | 0.062 | 0.104 | — |
| chr3_74409090_G_C | chr3:74409090 | 0.093 | 0.072 | 0.065 | — |
| chr3_74409121_C_G | chr3:74409121 | 0.093 | 0.103 | 0.057 | — |
| chr3_74409150_G_T | chr3:74409150 | -0.092 | -0.085 | -0.059 | — |
| chr3_74409085_C_T | chr3:74409085 | 0.091 | 0.061 | -0.054 | — |
| chr3_74409130_T_A | chr3:74409130 | 0.091 | 0.030 | -0.021 | — |
| chr3_74409122_C_G | chr3:74409122 | -0.089 | -0.090 | -0.035 | — |
| chr3_74409123_A_T | chr3:74409123 | 0.089 | 0.081 | 0.056 | — |
| chr3_74409077_A_C | chr3:74409077 | 0.088 | 0.067 | 0.078 | — |
| chr3_74409095_G_T | chr3:74409095 | 0.088 | 0.046 | 0.057 | — |
| chr3_74409125_T_A | chr3:74409125 | -0.088 | -0.063 | -0.047 | — |
| chr3_74409128_C_T | chr3:74409128 | -0.083 | -0.147 | -0.156 | — |
| chr3_74409148_C_G | chr3:74409148 | -0.087 | -0.081 | -0.032 | — |
| chr3_74409114_A_G | chr3:74409114 | -0.087 | -0.091 | -0.021 | — |
| chr3_74409081_C_G | chr3:74409081 | 0.083 | 0.066 | 0.053 | — |
| chr3_74409099_C_G | chr3:74409099 | -0.083 | -0.074 | -0.056 | — |
| chr3_74409083_T_G | chr3:74409083 | 0.082 | 0.065 | 0.044 | — |
| chr3_74409125_T_C | chr3:74409125 | -0.081 | -0.065 | -0.059 | — |
| chr3_74409089_G_C | chr3:74409089 | -0.080 | -0.067 | -0.060 | — |
| chr3_74409094_T_C | chr3:74409094 | 0.080 | 0.084 | 0.076 | <0.001% |
| chr3_74409097_G_C | chr3:74409097 | 0.080 | 0.058 | 0.082 | 0.030% |
| chr3_74409120_G_A | chr3:74409120 | -0.080 | -0.080 | -0.076 | — |
| chr3_74409154_T_C | chr3:74409154 | -0.080 | -0.084 | -0.057 | — |
| chr3_74409080_T_A | chr3:74409080 | 0.079 | 0.067 | 0.049 | — |
| chr3_74409117_A_C | chr3:74409117 | 0.079 | 0.089 | 0.099 | — |
| chr3_74409129_C_G | chr3:74409129 | 0.078 | 0.044 | 0.019 | — |
| chr3_74409134_G_A | chr3:74409134 | -0.078 | -0.077 | -0.072 | — |
| chr3_74409111_A_T | chr3:74409111 | -0.077 | -0.093 | -0.056 | — |
| chr3_74409122_C_T | chr3:74409122 | -0.077 | -0.061 | -0.065 | — |
| chr3_74409155_C_T | chr3:74409155 | -0.077 | -0.037 | -0.018 | <0.001% |
| chr3_74409091_T_G | chr3:74409091 | 0.077 | 0.063 | 0.049 | — |
| chr3_74409082_T_G | chr3:74409082 | 0.076 | 0.052 | 0.053 | — |
| chr3_74409088_T_A | chr3:74409088 | 0.075 | 0.061 | 0.019 | <0.001% |
| chr3_74409149_A_G | chr3:74409149 | 0.073 | 0.056 | 0.085 | — |
| chr3_74409111_A_G | chr3:74409111 | -0.072 | -0.094 | -0.060 | — |
| chr3_74409108_G_T | chr3:74409108 | -0.072 | -0.028 | -0.024 | — |
| chr3_74409084_A_T | chr3:74409084 | 0.071 | 0.069 | 0.056 | — |
| chr3_74409127_A_C | chr3:74409127 | -0.071 | -0.091 | -0.071 | — |
| chr3_74409099_C_A | chr3:74409099 | 0.070 | 0.055 | 0.026 | — |
| chr3_74409122_C_A | chr3:74409122 | -0.070 | -0.053 | -0.044 | <0.001% |
| chr3_74409110_A_G | chr3:74409110 | -0.067 | -0.089 | -0.021 | — |
| chr3_74409107_A_T | chr3:74409107 | -0.067 | -0.039 | -0.038 | — |
| chr3_74409113_T_G | chr3:74409113 | -0.067 | -0.082 | -0.019 | — |
| chr3_74409131_G_A | chr3:74409131 | -0.067 | -0.056 | -0.078 | — |
| chr3_74409077_A_T | chr3:74409077 | 0.065 | 0.053 | 0.054 | — |
| chr3_74409129_C_A | chr3:74409129 | 0.065 | 0.013 | -0.034 | — |
| chr3_74409138_T_C | chr3:74409138 | 0.065 | 0.053 | 0.065 | — |
| chr3_74409081_C_T | chr3:74409081 | 0.064 | 0.056 | 0.043 | <0.001% |
| chr3_74409132_A_T | chr3:74409132 | 0.064 | 0.063 | 0.059 | — |
| chr3_74409136_T_G | chr3:74409136 | 0.064 | 0.032 | 0.066 | — |
| chr3_74409128_C_A | chr3:74409128 | -0.056 | -0.079 | -0.109 | — |
| chr3_74409142_T_G | chr3:74409142 | -0.062 | -0.069 | -0.021 | — |
| chr3_74409088_T_G | chr3:74409088 | -0.061 | -0.051 | -0.049 | — |
| chr3_74409115_A_C | chr3:74409115 | 0.061 | 0.041 | 0.059 | — |
| chr3_74409108_G_C | chr3:74409108 | -0.059 | -0.043 | -0.009 | — |
| chr3_74409142_T_A | chr3:74409142 | 0.059 | 0.048 | 0.038 | — |
| chr3_74409147_C_T | chr3:74409147 | 0.059 | 0.053 | 0.018 | — |
| chr3_74409134_G_C | chr3:74409134 | 0.057 | 0.041 | 0.028 | — |
| chr3_74409056_T_A | chr3:74409056 | 0.057 | 0.055 | 0.043 | — |
| chr3_74409084_A_G | chr3:74409084 | 0.057 | 0.058 | 0.074 | — |
| chr3_74409117_A_T | chr3:74409117 | 0.057 | 0.093 | 0.084 | — |
| chr3_74409080_T_G | chr3:74409080 | 0.056 | 0.055 | 0.054 | — |
| chr3_74409128_C_G | chr3:74409128 | 0.055 | -0.010 | -0.044 | — |
| chr3_74409133_G_T | chr3:74409133 | -0.054 | -0.048 | -0.076 | — |
| chr3_74409076_G_C | chr3:74409076 | 0.053 | 0.033 | 0.047 | — |
| chr3_74409127_A_T | chr3:74409127 | -0.047 | -0.052 | -0.094 | — |
| chr3_74409153_C_G | chr3:74409153 | -0.053 | -0.027 | -0.032 | — |
| chr3_74409075_G_A | chr3:74409075 | -0.052 | -0.043 | -0.041 | — |
| chr3_74409076_G_A | chr3:74409076 | 0.052 | 0.047 | 0.029 | — |
| chr3_74409105_A_G | chr3:74409105 | -0.052 | -0.055 | -0.021 | — |
| chr3_74409106_A_T | chr3:74409106 | -0.051 | -0.062 | -0.035 | — |
| chr3_74409118_A_T | chr3:74409118 | -0.051 | -0.048 | -0.029 | — |
| chr3_74409095_G_C | chr3:74409095 | 0.050 | 0.020 | 0.057 | — |
| chr3_74409135_C_G | chr3:74409135 | -0.050 | -0.044 | -0.051 | — |
| chr3_74409104_T_G | chr3:74409104 | -0.049 | -0.047 | -0.013 | — |
| chr3_74409081_C_A | chr3:74409081 | 0.047 | 0.039 | 0.015 | — |
| chr3_74409100_A_T | chr3:74409100 | -0.047 | -0.046 | -0.010 | — |
| chr3_74409141_C_A | chr3:74409141 | 0.047 | 0.049 | 0.016 | — |
| chr3_74409151_A_C | chr3:74409151 | 0.033 | 0.029 | 0.082 | — |
| chr3_74409045_T_A | chr3:74409045 | 0.046 | 0.042 | 0.046 | — |
| chr3_74409082_T_C | chr3:74409082 | 0.046 | 0.043 | 0.051 | — |
| chr3_74409119_G_T | chr3:74409119 | 0.045 | -0.015 | -0.013 | — |
| chr3_74409123_A_G | chr3:74409123 | 0.045 | 0.023 | 0.059 | — |
| chr3_74409047_T_A | chr3:74409047 | 0.043 | 0.038 | 0.029 | — |
| chr3_74409078_T_A | chr3:74409078 | 0.043 | 0.034 | 0.025 | — |
| chr3_74409079_G_C | chr3:74409079 | 0.043 | 0.029 | 0.012 | — |
| chr3_74409111_A_C | chr3:74409111 | -0.043 | -0.061 | -0.016 | — |
| chr3_74409126_C_T | chr3:74409126 | -0.043 | -0.036 | -0.043 | — |
| chr3_74409000_A_G | chr3:74409000 | -0.042 | -0.033 | 0.018 | — |
| chr3_74409099_C_T | chr3:74409099 | -0.042 | -0.034 | -0.035 | — |
| chr3_74409070_T_C | chr3:74409070 | -0.042 | -0.044 | -0.006 | <0.001% |
| chr3_74409085_C_A | chr3:74409085 | 0.042 | 0.043 | 0.001 | — |
| chr3_74409139_C_A | chr3:74409139 | 0.042 | 0.048 | 0.004 | — |
| chr3_74409142_T_C | chr3:74409142 | 0.042 | 0.028 | 0.057 | — |
| chr3_74409149_A_T | chr3:74409149 | -0.042 | -0.029 | -0.010 | — |
| chr3_74409074_A_C | chr3:74409074 | 0.041 | 0.022 | 0.041 | — |
| chr3_74409086_C_G | chr3:74409086 | -0.041 | -0.033 | -0.026 | — |
| chr3_74409136_T_A | chr3:74409136 | 0.041 | 0.020 | 0.022 | — |
| chr3_74409148_C_T | chr3:74409148 | -0.041 | -0.038 | -0.047 | — |
| chr3_74409150_G_A | chr3:74409150 | 0.040 | 0.027 | 0.013 | — |
| chr3_74409154_T_G | chr3:74409154 | 0.019 | 0.048 | 0.069 | — |
| chr3_74409000_A_T | chr3:74409000 | -0.038 | -0.016 | -0.024 | — |
| chr3_74409059_G_T | chr3:74409059 | 0.038 | 0.041 | 0.000 | — |
| chr3_74409071_A_C | chr3:74409071 | -0.038 | -0.038 | -0.013 | — |
| chr3_74409080_T_C | chr3:74409080 | 0.038 | 0.033 | 0.049 | — |
| chr3_74409107_A_G | chr3:74409107 | -0.038 | -0.029 | 0.004 | — |
| chr3_74409115_A_T | chr3:74409115 | 0.038 | 0.009 | 0.015 | — |
| chr3_74409120_G_C | chr3:74409120 | -0.038 | -0.046 | -0.026 | — |
| chr3_74409098_T_A | chr3:74409098 | 0.037 | 0.020 | 0.046 | — |
| chr3_74409098_T_G | chr3:74409098 | -0.037 | -0.038 | -0.004 | — |
| chr3_74409124_T_A | chr3:74409124 | -0.037 | -0.010 | -0.029 | — |
| chr3_74409040_A_G | chr3:74409040 | -0.036 | -0.023 | -0.007 | — |
| chr3_74409056_T_C | chr3:74409056 | 0.036 | 0.027 | 0.037 | — |
| chr3_74409065_C_A | chr3:74409065 | 0.036 | 0.043 | -0.012 | <0.001% |
| chr3_74409114_A_C | chr3:74409114 | -0.036 | -0.029 | 0.015 | — |
| chr3_74409114_A_T | chr3:74409114 | -0.036 | -0.023 | 0.009 | — |
| chr3_74409155_C_A | chr3:74409155 | -0.036 | 0.005 | 0.012 | — |
| chr3_74409026_A_G | chr3:74409026 | -0.035 | -0.037 | 0.024 | — |
| chr3_74409084_A_C | chr3:74409084 | 0.034 | 0.046 | 0.041 | 0.0033% |
| chr3_74409028_G_T | chr3:74409028 | 0.033 | 0.039 | -0.012 | — |
| chr3_74409032_A_C | chr3:74409032 | -0.033 | -0.038 | 0.012 | — |
| chr3_74409072_T_A | chr3:74409072 | 0.033 | 0.028 | 0.038 | — |
| chr3_74409076_G_T | chr3:74409076 | 0.033 | 0.018 | 0.015 | — |
| chr3_74409087_A_T | chr3:74409087 | 0.033 | 0.029 | 0.013 | — |
| chr3_74409050_G_C | chr3:74409050 | 0.032 | 0.030 | 0.021 | — |
| chr3_74409102_G_T | chr3:74409102 | -0.032 | -0.016 | -0.010 | — |
| chr3_74409126_C_A | chr3:74409126 | 0.021 | 0.015 | -0.057 | — |
| chr3_74409004_A_C | chr3:74409004 | -0.032 | -0.041 | 0.003 | — |
| chr3_74409137_G_C | chr3:74409137 | 0.032 | 0.013 | 0.016 | — |
| chr3_74409061_T_C | chr3:74409061 | 0.031 | 0.053 | 0.035 | — |
| chr3_74409078_T_C | chr3:74409078 | 0.031 | 0.022 | 0.043 | — |
| chr3_74409115_A_G | chr3:74409115 | 0.031 | 0.037 | 0.053 | — |
| chr3_74409014_A_C | chr3:74409014 | 0.030 | 0.024 | 0.040 | — |
| chr3_74409054_T_A | chr3:74409054 | 0.030 | 0.039 | 0.028 | — |
| chr3_74409120_G_T | chr3:74409120 | 0.030 | 0.022 | 0.001 | — |
| chr3_74409137_G_T | chr3:74409137 | -0.030 | -0.028 | -0.044 | <0.001% |
| chr3_74408986_G_C | chr3:74408986 | -0.029 | -0.016 | 0.001 | — |
| chr3_74409014_A_T | chr3:74409014 | 0.029 | 0.027 | 0.007 | — |
Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.