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GALNT9
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near GALNT9
chr12:132,096,371..132,429,589, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr12_132181915_G_T | chr12:132181915 | 0.105 | 0.115 | 0.553 | — |
| chr12_132181886_C_T | chr12:132181886 | 0.069 | 0.093 | 0.474 | 0.0044% |
| chr12_132181890_C_T | chr12:132181890 | 0.065 | 0.091 | 0.459 | 0.083% |
| chr12_132181890_C_A | chr12:132181890 | 0.053 | 0.080 | 0.403 | 0.0022% |
| chr12_132181890_C_G | chr12:132181890 | 0.049 | 0.070 | 0.388 | 0.0065% |
| chr12_132181886_C_A | chr12:132181886 | 0.049 | 0.070 | 0.365 | 1.58% |
| chr12_132181886_C_G | chr12:132181886 | 0.046 | 0.069 | 0.365 | 0.0022% |
| chr12_132181894_C_T | chr12:132181894 | 0.046 | 0.072 | 0.347 | 0.0015% |
| chr12_132181894_C_A | chr12:132181894 | 0.042 | 0.076 | 0.341 | 0.020% |
| chr12_132181882_C_T | chr12:132181882 | 0.042 | 0.072 | 0.326 | 0.0025% |
| chr12_132181882_C_G | chr12:132181882 | 0.041 | 0.074 | 0.324 | 0.0074% |
| chr12_132181882_C_A | chr12:132181882 | 0.037 | 0.072 | 0.318 | 0.069% |
| chr12_132398316_C_A | chr12:132398316 | 0.174 | 0.296 | 0.265 | — |
| chr12_132181894_C_G | chr12:132181894 | 0.042 | 0.063 | 0.300 | 0.0081% |
| chr12_132181887_C_T | chr12:132181887 | 0.052 | 0.039 | 0.294 | 0.0022% |
| chr12_132181900_T_G | chr12:132181900 | 0.027 | 0.049 | 0.259 | — |
| chr12_132181891_C_T | chr12:132181891 | 0.045 | 0.036 | 0.253 | 0.0037% |
| chr12_132181885_C_T | chr12:132181885 | 0.043 | 0.021 | 0.244 | 0.0053% |
| chr12_132181920_C_G | chr12:132181920 | 0.047 | 0.054 | 0.238 | — |
| chr12_132325639_C_A | chr12:132325639 | 0.055 | 0.010 | 0.235 | — |
| chr12_132181881_C_G | chr12:132181881 | 0.012 | 0.050 | 0.221 | — |
| chr12_132181895_C_A | chr12:132181895 | 0.023 | 0.044 | 0.212 | <0.001% |
| chr12_132181881_C_A | chr12:132181881 | 0.018 | 0.055 | 0.206 | 1.07% |
| chr12_132181888_C_T | chr12:132181888 | 0.042 | 0.013 | 0.203 | 0.0066% |
| chr12_132325642_T_G | chr12:132325642 | 0.050 | -0.015 | 0.200 | — |
| chr12_132181881_C_T | chr12:132181881 | 0.019 | 0.041 | 0.191 | — |
| chr12_132181892_C_T | chr12:132181892 | 0.032 | 0.023 | 0.185 | — |
| chr12_132181898_A_G | chr12:132181898 | 0.020 | 0.037 | 0.185 | — |
| chr12_132181902_A_G | chr12:132181902 | 0.012 | 0.033 | 0.185 | — |
| chr12_132181924_G_C | chr12:132181924 | -0.017 | -0.011 | -0.176 | — |
| chr12_132181883_C_T | chr12:132181883 | 0.025 | 0.018 | 0.171 | — |
| chr12_132181903_T_G | chr12:132181903 | 0.010 | 0.026 | 0.171 | — |
| chr12_132181895_C_T | chr12:132181895 | 0.019 | 0.031 | 0.165 | — |
| chr12_132398279_T_C | chr12:132398279 | 0.056 | 0.168 | 0.159 | — |
| chr12_132181895_C_G | chr12:132181895 | 0.019 | 0.030 | 0.156 | 0.0059% |
| chr12_132398287_C_T | chr12:132398287 | 0.064 | 0.129 | 0.141 | — |
| chr12_132181814_G_T | chr12:132181814 | 0.078 | -0.005 | -0.085 | — |
| chr12_132181847_A_C | chr12:132181847 | -0.005 | -0.004 | -0.135 | — |
| chr12_132181908_C_G | chr12:132181908 | 0.010 | 0.007 | 0.129 | — |
| chr12_132181893_C_T | chr12:132181893 | 0.023 | 0.008 | 0.126 | <0.001% |
| chr12_132181880_C_A | chr12:132181880 | 0.012 | 0.020 | 0.124 | — |
| chr12_132181889_C_A | chr12:132181889 | -0.012 | -0.070 | -0.124 | 0.036% |
| chr12_132181904_G_T | chr12:132181904 | -0.018 | -0.021 | -0.124 | — |
| chr12_132181927_A_C | chr12:132181927 | -0.005 | -0.025 | -0.124 | — |
| chr12_132325667_A_C | chr12:132325667 | -0.027 | -0.033 | -0.124 | — |
| chr12_132181909_G_C | chr12:132181909 | -0.014 | -0.037 | -0.115 | — |
| chr12_132181871_A_C | chr12:132181871 | 0.029 | 0.027 | 0.112 | — |
| chr12_132181884_C_G | chr12:132181884 | -0.007 | -0.063 | -0.112 | — |
| chr12_132181905_G_A | chr12:132181905 | -0.001 | -0.020 | -0.109 | — |
| chr12_132398277_T_C | chr12:132398277 | 0.010 | 0.023 | 0.106 | 0.0020% |
| chr12_132181889_C_G | chr12:132181889 | -0.010 | -0.069 | -0.103 | 0.022% |
| chr12_132181844_G_C | chr12:132181844 | -0.009 | -0.007 | -0.100 | — |
| chr12_132325627_C_A | chr12:132325627 | 0.018 | -0.015 | 0.100 | — |
| chr12_132181906_G_C | chr12:132181906 | -0.007 | -0.019 | -0.097 | — |
| chr12_132181884_C_T | chr12:132181884 | 0.027 | -0.021 | 0.094 | 0.0079% |
| chr12_132181888_C_A | chr12:132181888 | -0.000 | -0.063 | -0.094 | 0.054% |
| chr12_132181906_G_T | chr12:132181906 | -0.006 | -0.008 | -0.094 | — |
| chr12_132325662_G_A | chr12:132325662 | 0.006 | -0.003 | -0.094 | — |
| chr12_132325672_G_C | chr12:132325672 | -0.008 | -0.008 | -0.094 | — |
| chr12_132398278_C_G | chr12:132398278 | 0.033 | 0.089 | 0.094 | 0.0013% |
| chr12_132181889_C_T | chr12:132181889 | 0.021 | -0.015 | 0.091 | — |
| chr12_132181853_T_A | chr12:132181853 | 0.051 | 0.006 | -0.026 | — |
| chr12_132181880_C_G | chr12:132181880 | 0.004 | 0.015 | 0.088 | 0.069% |
| chr12_132398269_A_C | chr12:132398269 | -0.014 | -0.030 | -0.088 | — |
| chr12_132398296_T_A | chr12:132398296 | 0.038 | 0.114 | 0.088 | — |
| chr12_132181827_T_G | chr12:132181827 | 0.007 | 0.006 | 0.085 | — |
| chr12_132181879_T_C | chr12:132181879 | -0.013 | -0.012 | -0.085 | 8.94% |
| chr12_132181811_T_C | chr12:132181811 | 0.011 | 0.020 | 0.082 | — |
| chr12_132181884_C_A | chr12:132181884 | -0.002 | -0.059 | -0.082 | 1.49% |
| chr12_132181902_A_T | chr12:132181902 | 0.002 | 0.011 | 0.082 | — |
| chr12_132181905_G_C | chr12:132181905 | -0.001 | -0.018 | -0.082 | — |
| chr12_132325639_C_G | chr12:132325639 | 0.024 | 0.004 | 0.082 | — |
| chr12_132398280_C_G | chr12:132398280 | 0.024 | 0.060 | 0.082 | — |
| chr12_132181888_C_G | chr12:132181888 | -0.001 | -0.063 | -0.079 | 0.022% |
| chr12_132181893_C_A | chr12:132181893 | -0.002 | -0.058 | -0.079 | — |
| chr12_132181907_G_C | chr12:132181907 | -0.013 | -0.020 | -0.079 | — |
| chr12_132181838_G_T | chr12:132181838 | 0.000 | -0.020 | -0.076 | — |
| chr12_132181858_C_G | chr12:132181858 | -0.005 | 0.008 | 0.076 | — |
| chr12_132181891_C_A | chr12:132181891 | 0.019 | -0.015 | 0.076 | 0.0030% |
| chr12_132181893_C_G | chr12:132181893 | 0.000 | -0.044 | -0.076 | — |
| chr12_132181912_T_A | chr12:132181912 | 0.032 | 0.024 | 0.076 | — |
| chr12_132181920_C_T | chr12:132181920 | 0.008 | 0.016 | 0.076 | — |
| chr12_132181925_C_T | chr12:132181925 | -0.013 | -0.020 | -0.076 | — |
| chr12_132325615_G_T | chr12:132325615 | 0.008 | 0.004 | 0.076 | — |
| chr12_132325699_T_G | chr12:132325699 | -0.009 | -0.008 | 0.076 | — |
| chr12_132398265_A_C | chr12:132398265 | 0.009 | -0.033 | -0.076 | — |
| chr12_132398284_T_C | chr12:132398284 | 0.024 | 0.074 | 0.076 | — |
| chr12_132398304_C_A | chr12:132398304 | 0.043 | 0.080 | 0.053 | — |
| chr12_132398309_T_G | chr12:132398309 | -0.004 | -0.004 | 0.076 | — |
| chr12_132181795_A_G | chr12:132181795 | -0.017 | -0.006 | -0.074 | — |
| chr12_132181910_C_G | chr12:132181910 | 0.006 | 0.013 | 0.074 | — |
| chr12_132398315_G_A | chr12:132398315 | 0.008 | 0.127 | -0.018 | — |
| chr12_132181843_C_A | chr12:132181843 | 0.006 | 0.016 | 0.071 | — |
| chr12_132181887_C_G | chr12:132181887 | -0.002 | -0.058 | -0.071 | 0.0030% |
| chr12_132181900_T_A | chr12:132181900 | 0.007 | 0.013 | 0.071 | — |
| chr12_132181905_G_T | chr12:132181905 | -0.005 | -0.007 | -0.071 | — |
| chr12_132181907_G_A | chr12:132181907 | -0.010 | -0.014 | -0.071 | <0.001% |
| chr12_132181913_C_T | chr12:132181913 | -0.001 | 0.018 | 0.071 | — |
| chr12_132325632_G_C | chr12:132325632 | -0.014 | 0.000 | -0.071 | — |
| chr12_132325662_G_C | chr12:132325662 | 0.006 | -0.009 | -0.071 | — |
| chr12_132325662_G_T | chr12:132325662 | 0.002 | 0.000 | -0.071 | — |
| chr12_132325733_T_C | chr12:132325733 | -0.002 | -0.022 | 0.071 | — |
| chr12_132398272_G_C | chr12:132398272 | 0.007 | 0.009 | 0.071 | — |
| chr12_132398276_T_G | chr12:132398276 | 0.017 | 0.006 | 0.071 | — |
| chr12_132398291_T_G | chr12:132398291 | -0.002 | -0.023 | -0.071 | — |
| chr12_132398292_G_C | chr12:132398292 | -0.039 | -0.076 | -0.071 | — |
| chr12_132398292_G_T | chr12:132398292 | -0.033 | -0.038 | -0.071 | — |
| chr12_132398313_T_C | chr12:132398313 | 0.011 | -0.003 | 0.071 | — |
| chr12_132181793_T_G | chr12:132181793 | -0.011 | -0.004 | -0.068 | — |
| chr12_132181892_C_G | chr12:132181892 | -0.001 | -0.049 | -0.068 | — |
| chr12_132181811_T_A | chr12:132181811 | 0.009 | 0.010 | 0.065 | — |
| chr12_132181849_G_C | chr12:132181849 | -0.002 | 0.007 | -0.065 | — |
| chr12_132181860_G_A | chr12:132181860 | -0.001 | 0.004 | 0.065 | — |
| chr12_132181867_G_T | chr12:132181867 | -0.006 | -0.016 | -0.065 | — |
| chr12_132181880_C_T | chr12:132181880 | 0.007 | 0.001 | 0.065 | — |
| chr12_132181887_C_A | chr12:132181887 | 0.000 | -0.055 | -0.065 | 38.8% |
| chr12_132181899_G_T | chr12:132181899 | 0.004 | 0.013 | 0.065 | — |
| chr12_132181904_G_C | chr12:132181904 | -0.002 | -0.011 | -0.065 | — |
| chr12_132325669_C_G | chr12:132325669 | 0.006 | 0.003 | 0.065 | — |
| chr12_132398263_A_G | chr12:132398263 | 0.008 | 0.006 | 0.065 | — |
| chr12_132398266_G_T | chr12:132398266 | -0.010 | -0.022 | -0.065 | — |
| chr12_132398269_A_G | chr12:132398269 | -0.002 | -0.023 | -0.065 | — |
| chr12_132398279_T_A | chr12:132398279 | 0.023 | 0.071 | 0.065 | — |
| chr12_132398317_C_G | chr12:132398317 | 0.005 | -0.088 | 0.065 | — |
| chr12_132398318_T_G | chr12:132398318 | 0.012 | -0.076 | 0.065 | — |
| chr12_132181808_A_G | chr12:132181808 | 0.009 | 0.021 | 0.062 | — |
| chr12_132181831_A_T | chr12:132181831 | 0.008 | 0.001 | -0.062 | <0.001% |
| chr12_132181907_G_T | chr12:132181907 | -0.008 | -0.009 | -0.062 | — |
| chr12_132181912_T_C | chr12:132181912 | 0.007 | -0.016 | -0.062 | — |
| chr12_132181831_A_G | chr12:132181831 | 0.007 | -0.007 | -0.059 | — |
| chr12_132181834_T_C | chr12:132181834 | 0.009 | -0.006 | -0.059 | — |
| chr12_132181848_C_T | chr12:132181848 | 0.010 | -0.003 | 0.059 | 0.052% |
| chr12_132181852_G_C | chr12:132181852 | -0.003 | -0.008 | -0.059 | — |
| chr12_132181870_A_G | chr12:132181870 | 0.007 | 0.008 | 0.059 | <0.001% |
| chr12_132181904_G_A | chr12:132181904 | 0.005 | -0.003 | -0.059 | — |
| chr12_132181920_C_A | chr12:132181920 | -0.003 | 0.010 | 0.059 | — |
| chr12_132325646_C_A | chr12:132325646 | -0.010 | 0.000 | -0.059 | — |
| chr12_132325655_G_A | chr12:132325655 | 0.007 | 0.008 | -0.059 | <0.001% |
| chr12_132325658_C_A | chr12:132325658 | 0.009 | 0.020 | 0.059 | — |
| chr12_132325663_G_A | chr12:132325663 | 0.010 | 0.008 | -0.059 | 0.026% |
| chr12_132325677_A_C | chr12:132325677 | -0.002 | -0.013 | -0.059 | — |
| chr12_132325686_G_T | chr12:132325686 | 0.002 | 0.003 | -0.059 | — |
| chr12_132325703_G_C | chr12:132325703 | 0.000 | -0.008 | -0.059 | — |
| chr12_132325713_C_G | chr12:132325713 | 0.020 | 0.011 | 0.059 | — |
| chr12_132325718_A_G | chr12:132325718 | -0.003 | 0.003 | 0.059 | — |
| chr12_132398262_T_G | chr12:132398262 | 0.011 | 0.015 | 0.059 | — |
| chr12_132398277_T_G | chr12:132398277 | -0.001 | 0.000 | 0.059 | — |
| chr12_132398279_T_G | chr12:132398279 | 0.008 | 0.024 | 0.059 | — |
| chr12_132398282_T_G | chr12:132398282 | 0.007 | 0.023 | 0.059 | — |
| chr12_132398289_C_G | chr12:132398289 | 0.021 | 0.037 | 0.059 | — |
| chr12_132398291_T_A | chr12:132398291 | -0.015 | -0.030 | -0.059 | — |
| chr12_132398295_T_A | chr12:132398295 | -0.029 | -0.077 | -0.059 | — |
| chr12_132181794_G_C | chr12:132181794 | -0.000 | 0.005 | 0.056 | — |
| chr12_132181858_C_A | chr12:132181858 | -0.006 | 0.006 | 0.056 | — |
| chr12_132181862_C_A | chr12:132181862 | 0.007 | -0.013 | -0.056 | — |
| chr12_132398318_T_A | chr12:132398318 | -0.005 | -0.096 | 0.012 | — |
| chr12_132398316_C_G | chr12:132398316 | -0.006 | -0.094 | 0.012 | — |
| chr12_132181796_G_C | chr12:132181796 | 0.003 | -0.004 | -0.053 | — |
| chr12_132181828_T_G | chr12:132181828 | 0.004 | 0.002 | 0.053 | — |
| chr12_132181867_G_C | chr12:132181867 | 0.000 | -0.018 | -0.053 | — |
| chr12_132181897_G_C | chr12:132181897 | 0.005 | 0.010 | 0.053 | — |
| chr12_132181900_T_C | chr12:132181900 | 0.005 | 0.006 | 0.053 | — |
| chr12_132325635_A_C | chr12:132325635 | -0.007 | -0.016 | -0.053 | — |
| chr12_132325640_G_C | chr12:132325640 | -0.009 | -0.009 | -0.053 | — |
| chr12_132325640_G_T | chr12:132325640 | -0.012 | -0.011 | -0.053 | — |
| chr12_132325668_C_G | chr12:132325668 | 0.000 | 0.003 | 0.053 | — |
| chr12_132325670_C_A | chr12:132325670 | 0.008 | 0.020 | 0.053 | — |
| chr12_132325670_C_G | chr12:132325670 | 0.006 | 0.008 | 0.053 | — |
| chr12_132325674_T_C | chr12:132325674 | 0.000 | -0.022 | -0.053 | — |
| chr12_132325686_G_A | chr12:132325686 | -0.002 | 0.004 | -0.053 | — |
| chr12_132325703_G_A | chr12:132325703 | 0.001 | -0.003 | -0.053 | — |
| chr12_132325739_A_G | chr12:132325739 | -0.007 | -0.011 | -0.053 | — |
| chr12_132398264_C_G | chr12:132398264 | 0.012 | 0.009 | 0.053 | — |
| chr12_132398286_G_T | chr12:132398286 | -0.022 | -0.013 | -0.053 | — |
| chr12_132398314_G_T | chr12:132398314 | -0.016 | -0.091 | -0.029 | — |
| chr12_132181800_A_T | chr12:132181800 | -0.008 | -0.004 | -0.050 | — |
| chr12_132181809_G_C | chr12:132181809 | -0.003 | 0.010 | 0.050 | — |
| chr12_132181874_C_A | chr12:132181874 | 0.003 | -0.001 | 0.050 | — |
| chr12_132181891_C_G | chr12:132181891 | 0.016 | -0.023 | 0.050 | 0.057% |
| chr12_132181916_A_C | chr12:132181916 | 0.001 | -0.008 | -0.050 | — |
| chr12_132181917_C_G | chr12:132181917 | 0.012 | 0.011 | 0.050 | — |
| chr12_132181923_G_C | chr12:132181923 | -0.005 | -0.012 | -0.050 | — |
| chr12_132398314_G_C | chr12:132398314 | -0.016 | -0.086 | 0.012 | — |
| chr12_132181865_T_A | chr12:132181865 | -0.027 | -0.003 | -0.003 | — |
| chr12_132181847_A_G | chr12:132181847 | 0.002 | -0.008 | -0.047 | — |
| chr12_132181906_G_A | chr12:132181906 | -0.003 | -0.006 | -0.047 | — |
| chr12_132181913_C_G | chr12:132181913 | 0.010 | 0.010 | 0.047 | — |
| chr12_132325621_C_G | chr12:132325621 | 0.006 | 0.003 | 0.047 | — |
| chr12_132325625_A_G | chr12:132325625 | 0.015 | 0.003 | 0.047 | — |
| chr12_132325640_G_A | chr12:132325640 | -0.003 | 0.003 | -0.047 | <0.001% |
| chr12_132325644_G_C | chr12:132325644 | 0.022 | -0.013 | 0.047 | — |
| chr12_132325651_C_A | chr12:132325651 | -0.009 | -0.001 | -0.047 | — |
| chr12_132325651_C_T | chr12:132325651 | -0.013 | -0.003 | -0.047 | — |
| chr12_132325656_C_A | chr12:132325656 | 0.007 | 0.009 | -0.047 | — |
| chr12_132325658_C_G | chr12:132325658 | 0.007 | 0.005 | 0.047 | — |
| chr12_132325660_G_C | chr12:132325660 | -0.012 | -0.005 | -0.047 | — |
| chr12_132325669_C_A | chr12:132325669 | 0.006 | 0.009 | 0.047 | — |
| chr12_132325670_C_T | chr12:132325670 | 0.004 | 0.018 | 0.047 | — |
| chr12_132325672_G_T | chr12:132325672 | -0.002 | 0.009 | -0.047 | 0.181% |
| chr12_132325680_C_T | chr12:132325680 | 0.001 | 0.004 | -0.047 | — |
Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.