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GGA1
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near GGA1
chr22:37,508,473..37,733,564, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr22_37519504_G_T | chr22:37519504 | 0.341 | 0.106 | 1.000 | — |
| chr22_37560435_C_G | chr22:37560435 | 0.529 | -0.053 | 0.418 | — |
| chr22_37560434_G_C | chr22:37560434 | -0.493 | 0.020 | -0.156 | — |
| chr22_37560515_C_A | chr22:37560515 | 0.483 | -0.058 | 0.060 | — |
| chr22_37560438_C_G | chr22:37560438 | -0.473 | -0.023 | -0.196 | — |
| chr22_37560427_A_C | chr22:37560427 | -0.469 | 0.012 | -0.188 | — |
| chr22_37560435_C_A | chr22:37560435 | 0.469 | 0.007 | 0.506 | — |
| chr22_37519566_G_T | chr22:37519566 | 0.468 | 0.144 | 0.732 | — |
| chr22_37560466_G_C | chr22:37560466 | -0.453 | 0.031 | -0.085 | — |
| chr22_37560516_G_A | chr22:37560516 | 0.453 | 0.060 | 0.310 | — |
| chr22_37560440_G_C | chr22:37560440 | -0.451 | 0.012 | -0.129 | — |
| chr22_37560429_A_C | chr22:37560429 | -0.449 | 0.007 | -0.321 | — |
| chr22_37519577_C_A | chr22:37519577 | -0.216 | -0.125 | -0.785 | — |
| chr22_37560437_C_G | chr22:37560437 | -0.434 | -0.045 | -0.300 | — |
| chr22_37519577_C_G | chr22:37519577 | -0.098 | -0.167 | -0.762 | — |
| chr22_37519553_G_C | chr22:37519553 | -0.290 | -0.316 | -0.750 | — |
| chr22_37519568_C_A | chr22:37519568 | -0.308 | -0.186 | -0.747 | — |
| chr22_37560423_G_C | chr22:37560423 | -0.418 | 0.032 | -0.162 | — |
| chr22_37519549_C_T | chr22:37519549 | 0.288 | 0.088 | 0.735 | — |
| chr22_37560414_G_T | chr22:37560414 | -0.413 | -0.017 | -0.129 | — |
| chr22_37560421_G_A | chr22:37560421 | 0.409 | -0.004 | 0.438 | — |
| chr22_37519502_G_A | chr22:37519502 | 0.158 | 0.168 | 0.697 | — |
| chr22_37519564_G_C | chr22:37519564 | 0.364 | -0.012 | 0.685 | — |
| chr22_37519569_T_C | chr22:37519569 | -0.366 | -0.183 | -0.635 | — |
| chr22_37519544_T_A | chr22:37519544 | -0.235 | -0.126 | -0.640 | — |
| chr22_37560409_C_G | chr22:37560409 | -0.361 | 0.049 | -0.153 | — |
| chr22_37519556_G_T | chr22:37519556 | 0.171 | -0.041 | 0.632 | — |
| chr22_37519512_C_T | chr22:37519512 | 0.273 | 0.199 | 0.626 | — |
| chr22_37560421_G_C | chr22:37560421 | 0.349 | 0.022 | 0.256 | — |
| chr22_37519520_C_A | chr22:37519520 | 0.298 | 0.146 | 0.612 | — |
| chr22_37519448_C_A | chr22:37519448 | 0.265 | -0.005 | 0.609 | — |
| chr22_37560416_C_G | chr22:37560416 | -0.343 | 0.028 | -0.093 | — |
| chr22_37519483_G_T | chr22:37519483 | 0.208 | 0.142 | 0.603 | — |
| chr22_37560524_C_T | chr22:37560524 | 0.087 | 0.051 | 0.601 | — |
| chr22_37560476_C_G | chr22:37560476 | -0.338 | 0.030 | -0.132 | — |
| chr22_37519517_C_T | chr22:37519517 | 0.268 | 0.251 | 0.582 | — |
| chr22_37519531_C_A | chr22:37519531 | 0.198 | 0.107 | 0.582 | 0.0020% |
| chr22_37560462_G_C | chr22:37560462 | -0.328 | 0.059 | 0.044 | <0.001% |
| chr22_37560529_G_T | chr22:37560529 | 0.141 | 0.076 | 0.566 | — |
| chr22_37519455_T_C | chr22:37519455 | -0.231 | -0.074 | -0.565 | — |
| chr22_37560529_G_A | chr22:37560529 | 0.116 | 0.083 | 0.563 | 0.0013% |
| chr22_37519576_G_A | chr22:37519576 | 0.285 | 0.022 | 0.562 | — |
| chr22_37519454_C_T | chr22:37519454 | 0.160 | 0.060 | 0.556 | — |
| chr22_37560420_A_G | chr22:37560420 | -0.314 | 0.005 | -0.275 | — |
| chr22_37560521_G_A | chr22:37560521 | -0.008 | 0.034 | 0.556 | — |
| chr22_37519500_G_A | chr22:37519500 | 0.196 | 0.217 | 0.547 | — |
| chr22_37560468_G_C | chr22:37560468 | 0.309 | -0.042 | 0.003 | 0.0020% |
| chr22_37560395_C_T | chr22:37560395 | 0.306 | 0.022 | 0.332 | — |
| chr22_37560526_G_T | chr22:37560526 | 0.206 | 0.084 | 0.538 | — |
| chr22_37560524_C_A | chr22:37560524 | 0.120 | 0.055 | 0.537 | — |
| chr22_37560396_G_C | chr22:37560396 | -0.303 | -0.028 | -0.185 | — |
| chr22_37560418_G_C | chr22:37560418 | -0.303 | -0.012 | -0.168 | — |
| chr22_37519554_C_A | chr22:37519554 | 0.121 | 0.039 | 0.532 | — |
| chr22_37560419_G_C | chr22:37560419 | -0.301 | -0.028 | -0.159 | — |
| chr22_37560431_C_T | chr22:37560431 | 0.300 | 0.007 | 0.203 | — |
| chr22_37560443_C_T | chr22:37560443 | 0.300 | 0.000 | 0.218 | — |
| chr22_37519511_C_T | chr22:37519511 | 0.216 | 0.103 | 0.526 | <0.001% |
| chr22_37560470_C_T | chr22:37560470 | 0.170 | 0.124 | 0.526 | — |
| chr22_37560523_G_A | chr22:37560523 | 0.090 | 0.076 | 0.526 | <0.001% |
| chr22_37560435_C_T | chr22:37560435 | 0.296 | -0.005 | 0.309 | — |
| chr22_37519456_C_A | chr22:37519456 | 0.211 | 0.122 | 0.515 | — |
| chr22_37560530_C_T | chr22:37560530 | 0.183 | 0.090 | 0.515 | — |
| chr22_37560522_C_T | chr22:37560522 | 0.113 | 0.086 | 0.513 | — |
| chr22_37560527_C_A | chr22:37560527 | 0.123 | 0.072 | 0.513 | — |
| chr22_37519514_C_A | chr22:37519514 | 0.208 | 0.135 | 0.512 | — |
| chr22_37519440_C_G | chr22:37519440 | -0.163 | -0.056 | -0.506 | — |
| chr22_37519499_C_A | chr22:37519499 | 0.100 | 0.052 | 0.506 | — |
| chr22_37560517_G_T | chr22:37560517 | 0.286 | 0.016 | 0.385 | — |
| chr22_37560409_C_T | chr22:37560409 | -0.285 | 0.015 | 0.000 | — |
| chr22_37560413_A_T | chr22:37560413 | -0.285 | -0.048 | -0.144 | — |
| chr22_37560428_C_A | chr22:37560428 | 0.283 | 0.011 | 0.250 | — |
| chr22_37519443_G_T | chr22:37519443 | 0.151 | 0.062 | 0.494 | — |
| chr22_37560411_G_C | chr22:37560411 | -0.280 | -0.048 | -0.224 | 0.0020% |
| chr22_37560522_C_A | chr22:37560522 | 0.083 | 0.070 | 0.493 | — |
| chr22_37560399_A_G | chr22:37560399 | -0.278 | 0.027 | -0.309 | — |
| chr22_37560413_A_C | chr22:37560413 | -0.278 | -0.044 | -0.347 | — |
| chr22_37560413_A_G | chr22:37560413 | -0.276 | 0.009 | -0.188 | — |
| chr22_37519513_C_T | chr22:37519513 | 0.220 | 0.141 | 0.485 | — |
| chr22_37560527_C_T | chr22:37560527 | 0.110 | 0.062 | 0.484 | — |
| chr22_37560439_C_A | chr22:37560439 | -0.273 | 0.024 | 0.003 | 0.0013% |
| chr22_37519557_T_C | chr22:37519557 | -0.082 | -0.180 | -0.479 | — |
| chr22_37560397_G_C | chr22:37560397 | -0.271 | -0.025 | -0.137 | — |
| chr22_37560414_G_A | chr22:37560414 | -0.270 | -0.033 | 0.015 | — |
| chr22_37560510_C_T | chr22:37560510 | 0.208 | 0.047 | 0.476 | — |
| chr22_37519446_C_A | chr22:37519446 | 0.166 | 0.043 | 0.471 | — |
| chr22_37560459_G_T | chr22:37560459 | 0.266 | 0.044 | 0.215 | — |
| chr22_37560429_A_T | chr22:37560429 | -0.265 | 0.009 | -0.153 | — |
| chr22_37519484_C_A | chr22:37519484 | 0.125 | 0.121 | 0.465 | — |
| chr22_37560479_C_A | chr22:37560479 | 0.263 | -0.007 | 0.326 | — |
| chr22_37560526_G_A | chr22:37560526 | 0.140 | 0.067 | 0.465 | — |
| chr22_37519538_A_C | chr22:37519538 | -0.203 | -0.179 | -0.459 | — |
| chr22_37519521_C_T | chr22:37519521 | 0.150 | 0.131 | 0.453 | — |
| chr22_37519505_T_G | chr22:37519505 | -0.082 | -0.132 | -0.450 | — |
| chr22_37519510_C_T | chr22:37519510 | 0.146 | 0.115 | 0.450 | 0.0020% |
| chr22_37519528_G_T | chr22:37519528 | 0.121 | 0.008 | 0.450 | — |
| chr22_37519514_C_T | chr22:37519514 | 0.148 | 0.151 | 0.447 | — |
| chr22_37560415_G_A | chr22:37560415 | -0.253 | 0.000 | 0.074 | — |
| chr22_37560421_G_T | chr22:37560421 | 0.253 | 0.049 | 0.297 | — |
| chr22_37560439_C_G | chr22:37560439 | -0.253 | 0.003 | -0.115 | — |
| chr22_37560530_C_A | chr22:37560530 | 0.163 | 0.075 | 0.447 | — |
| chr22_37560521_G_T | chr22:37560521 | 0.080 | 0.060 | 0.441 | — |
| chr22_37560411_G_T | chr22:37560411 | -0.246 | 0.018 | 0.071 | — |
| chr22_37560434_G_A | chr22:37560434 | -0.246 | -0.003 | -0.012 | — |
| chr22_37560525_G_T | chr22:37560525 | 0.100 | 0.054 | 0.432 | — |
| chr22_37560398_G_C | chr22:37560398 | -0.243 | -0.007 | -0.125 | — |
| chr22_37560404_A_T | chr22:37560404 | 0.243 | -0.006 | 0.090 | — |
| chr22_37519473_T_C | chr22:37519473 | -0.170 | -0.041 | -0.426 | — |
| chr22_37607027_G_A | chr22:37607027 | 0.240 | 0.147 | 0.171 | — |
| chr22_37560479_C_G | chr22:37560479 | 0.238 | -0.047 | 0.271 | — |
| chr22_37519457_C_A | chr22:37519457 | 0.092 | 0.030 | 0.418 | — |
| chr22_37560412_G_C | chr22:37560412 | -0.236 | -0.012 | -0.156 | — |
| chr22_37560454_C_T | chr22:37560454 | 0.236 | 0.050 | 0.232 | — |
| chr22_37560510_C_A | chr22:37560510 | 0.211 | 0.037 | 0.418 | — |
| chr22_37560397_G_A | chr22:37560397 | -0.235 | 0.003 | 0.054 | <0.001% |
| chr22_37519448_C_T | chr22:37519448 | 0.130 | 0.066 | 0.412 | — |
| chr22_37519461_G_A | chr22:37519461 | 0.080 | 0.135 | 0.412 | <0.001% |
| chr22_37560417_G_A | chr22:37560417 | -0.233 | 0.025 | 0.071 | — |
| chr22_37560417_G_C | chr22:37560417 | -0.233 | 0.009 | -0.068 | 0.0013% |
| chr22_37560425_C_A | chr22:37560425 | 0.233 | -0.008 | 0.185 | — |
| chr22_37519504_G_A | chr22:37519504 | 0.103 | 0.055 | 0.406 | — |
| chr22_37519563_T_A | chr22:37519563 | 0.230 | 0.025 | 0.126 | — |
| chr22_37519544_T_C | chr22:37519544 | -0.185 | -0.081 | -0.404 | — |
| chr22_37519505_T_C | chr22:37519505 | -0.123 | -0.124 | -0.400 | — |
| chr22_37519566_G_A | chr22:37519566 | 0.226 | 0.140 | 0.376 | — |
| chr22_37519548_T_C | chr22:37519548 | -0.186 | -0.121 | -0.399 | — |
| chr22_37519470_G_T | chr22:37519470 | 0.098 | 0.127 | 0.397 | — |
| chr22_37519521_C_A | chr22:37519521 | 0.166 | 0.089 | 0.397 | — |
| chr22_37519566_G_C | chr22:37519566 | 0.225 | 0.038 | 0.374 | — |
| chr22_37519455_T_G | chr22:37519455 | -0.040 | -0.086 | -0.394 | — |
| chr22_37519487_C_A | chr22:37519487 | 0.083 | 0.070 | 0.394 | — |
| chr22_37519487_C_T | chr22:37519487 | 0.080 | 0.075 | 0.394 | 0.0027% |
| chr22_37560418_G_A | chr22:37560418 | -0.223 | -0.008 | -0.079 | — |
| chr22_37560428_C_G | chr22:37560428 | 0.223 | 0.011 | 0.238 | — |
| chr22_37560523_G_T | chr22:37560523 | 0.110 | 0.043 | 0.394 | — |
| chr22_37519448_C_G | chr22:37519448 | 0.221 | -0.027 | 0.359 | — |
| chr22_37560429_A_G | chr22:37560429 | 0.221 | -0.017 | 0.018 | — |
| chr22_37560398_G_T | chr22:37560398 | -0.220 | 0.030 | 0.104 | — |
| chr22_37519442_C_T | chr22:37519442 | 0.083 | 0.059 | 0.385 | — |
| chr22_37519501_T_C | chr22:37519501 | -0.080 | -0.088 | -0.385 | <0.001% |
| chr22_37519530_C_G | chr22:37519530 | 0.218 | 0.043 | 0.174 | — |
| chr22_37519444_T_C | chr22:37519444 | -0.082 | -0.057 | -0.382 | — |
| chr22_37519500_G_T | chr22:37519500 | 0.017 | 0.043 | 0.382 | — |
| chr22_37560425_C_T | chr22:37560425 | 0.216 | -0.003 | 0.226 | — |
| chr22_37560504_G_T | chr22:37560504 | 0.216 | 0.048 | 0.228 | — |
| chr22_37560531_C_A | chr22:37560531 | 0.133 | 0.045 | 0.381 | — |
| chr22_37519459_G_A | chr22:37519459 | 0.065 | 0.075 | 0.379 | — |
| chr22_37560404_A_C | chr22:37560404 | 0.213 | -0.016 | -0.009 | 0.0014% |
| chr22_37560432_C_A | chr22:37560432 | 0.213 | 0.025 | 0.297 | — |
| chr22_37560470_C_A | chr22:37560470 | 0.113 | 0.086 | 0.376 | <0.001% |
| chr22_37519468_G_T | chr22:37519468 | 0.067 | 0.114 | 0.374 | — |
| chr22_37560472_A_C | chr22:37560472 | -0.211 | -0.036 | -0.203 | — |
| chr22_37519469_G_T | chr22:37519469 | 0.072 | 0.081 | 0.371 | — |
| chr22_37519473_T_G | chr22:37519473 | -0.030 | -0.071 | -0.371 | — |
| chr22_37560515_C_T | chr22:37560515 | 0.210 | 0.037 | 0.224 | 0.0013% |
| chr22_37519512_C_A | chr22:37519512 | 0.181 | 0.114 | 0.368 | — |
| chr22_37519557_T_G | chr22:37519557 | 0.000 | -0.147 | -0.368 | — |
| chr22_37519562_C_T | chr22:37519562 | 0.108 | 0.076 | 0.368 | — |
| chr22_37519447_C_A | chr22:37519447 | 0.105 | 0.050 | 0.365 | — |
| chr22_37560426_C_T | chr22:37560426 | 0.206 | -0.005 | 0.215 | — |
| chr22_37560498_T_C | chr22:37560498 | -0.206 | 0.017 | -0.156 | — |
| chr22_37560514_C_T | chr22:37560514 | 0.163 | 0.069 | 0.365 | — |
| chr22_37519489_C_T | chr22:37519489 | 0.058 | 0.067 | 0.362 | — |
| chr22_37519525_C_T | chr22:37519525 | 0.042 | 0.119 | 0.359 | — |
| chr22_37560395_C_A | chr22:37560395 | 0.203 | 0.027 | 0.316 | — |
| chr22_37560431_C_G | chr22:37560431 | -0.203 | -0.036 | -0.191 | — |
| chr22_37560450_C_A | chr22:37560450 | 0.203 | -0.036 | 0.079 | — |
| chr22_37560531_C_T | chr22:37560531 | 0.136 | 0.048 | 0.357 | — |
| chr22_37519475_C_A | chr22:37519475 | 0.118 | 0.034 | 0.356 | — |
| chr22_37519490_G_T | chr22:37519490 | -0.003 | 0.102 | 0.356 | — |
| chr22_37519562_C_A | chr22:37519562 | 0.080 | 0.002 | 0.356 | — |
| chr22_37560456_C_A | chr22:37560456 | 0.200 | 0.003 | 0.109 | — |
| chr22_37519548_T_G | chr22:37519548 | -0.068 | -0.082 | -0.351 | — |
| chr22_37560519_A_G | chr22:37560519 | -0.040 | -0.050 | -0.351 | — |
| chr22_37519506_C_G | chr22:37519506 | -0.058 | -0.124 | -0.350 | — |
| chr22_37560493_G_C | chr22:37560493 | -0.198 | -0.017 | -0.138 | — |
| chr22_37560397_G_T | chr22:37560397 | -0.196 | 0.025 | 0.119 | — |
| chr22_37560414_G_C | chr22:37560414 | -0.196 | -0.010 | -0.072 | — |
| chr22_37519486_G_T | chr22:37519486 | 0.042 | 0.074 | 0.344 | — |
| chr22_37519490_G_C | chr22:37519490 | -0.195 | 0.002 | -0.259 | 0.0013% |
| chr22_37519515_G_C | chr22:37519515 | -0.191 | -0.102 | -0.344 | — |
| chr22_37560437_C_T | chr22:37560437 | 0.195 | -0.004 | 0.150 | — |
| chr22_37560525_G_A | chr22:37560525 | 0.120 | 0.046 | 0.344 | <0.001% |
| chr22_37560519_A_C | chr22:37560519 | -0.130 | -0.055 | -0.343 | — |
| chr22_37519450_C_T | chr22:37519450 | 0.055 | 0.051 | 0.341 | — |
| chr22_37519478_A_G | chr22:37519478 | -0.023 | -0.077 | -0.341 | — |
| chr22_37560406_G_T | chr22:37560406 | 0.193 | 0.037 | 0.262 | <0.001% |
| chr22_37560415_G_C | chr22:37560415 | -0.193 | -0.005 | 0.003 | — |
| chr22_37560416_C_T | chr22:37560416 | -0.193 | 0.037 | 0.087 | — |
| chr22_37519441_C_T | chr22:37519441 | 0.092 | 0.041 | 0.338 | — |
| chr22_37519477_C_T | chr22:37519477 | 0.095 | 0.048 | 0.338 | <0.001% |
| chr22_37560475_G_A | chr22:37560475 | 0.050 | 0.074 | 0.338 | <0.001% |
| chr22_37519453_C_T | chr22:37519453 | 0.045 | 0.080 | 0.335 | — |
| chr22_37519499_C_T | chr22:37519499 | 0.075 | 0.015 | 0.335 | — |
| chr22_37519538_A_G | chr22:37519538 | -0.106 | -0.067 | -0.335 | 0.0014% |
| chr22_37560436_C_G | chr22:37560436 | -0.190 | -0.043 | -0.274 | — |
| chr22_37560443_C_A | chr22:37560443 | 0.190 | 0.005 | 0.156 | — |
| chr22_37519540_G_C | chr22:37519540 | -0.186 | -0.086 | -0.332 | — |
| chr22_37560513_G_A | chr22:37560513 | 0.087 | 0.056 | 0.332 | — |
| chr22_37519469_G_A | chr22:37519469 | 0.067 | 0.091 | 0.329 | — |
| chr22_37519568_C_G | chr22:37519568 | -0.145 | -0.084 | -0.329 | — |
Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.