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GPC1

This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.

Scored variants near GPC1

chr2:240,335,662..240,568,076, gene body plus 100 kb. Showing the strongest 200 by effect size.

Variant	Position	PXR	FXR	AhR	AF
chr2_240551567_T_C	chr2:240551567	0.276	0.246	0.621	—
chr2_240551616_T_G	chr2:240551616	0.307	0.274	0.474	—
chr2_240551602_T_C	chr2:240551602	0.207	0.226	0.382	—
chr2_240431470_C_G	chr2:240431470	0.137	0.052	0.259	—
chr2_240551653_G_C	chr2:240551653	0.072	0.008	0.253	—
chr2_240567465_C_G	chr2:240567465	0.045	0.013	0.224	—
chr2_240551598_T_A	chr2:240551598	0.123	0.091	0.206	—
chr2_240551566_T_G	chr2:240551566	0.059	-0.043	0.212	—
chr2_240567443_A_G	chr2:240567443	0.042	0.030	0.212	—
chr2_240567466_C_G	chr2:240567466	0.067	0.008	0.212	—
chr2_240431458_T_C	chr2:240431458	0.104	0.030	0.200	—
chr2_240551667_T_C	chr2:240551667	0.047	0.030	0.200	—
chr2_240567449_C_G	chr2:240567449	0.062	0.061	0.200	—
chr2_240567445_A_C	chr2:240567445	-0.013	0.028	0.188	—
chr2_240567459_A_G	chr2:240567459	-0.022	0.033	0.188	—
chr2_240567467_C_A	chr2:240567467	-0.027	-0.036	-0.188	—
chr2_240551681_A_G	chr2:240551681	0.044	0.025	0.185	—
chr2_240567479_A_G	chr2:240567479	0.077	0.046	0.176	—
chr2_240551640_A_C	chr2:240551640	0.057	0.033	0.156	—
chr2_240551585_C_G	chr2:240551585	0.066	0.051	0.153	—
chr2_240551682_T_G	chr2:240551682	0.084	0.124	0.153	—
chr2_240567454_G_C	chr2:240567454	-0.008	-0.030	-0.153	—
chr2_240567462_A_G	chr2:240567462	0.052	0.023	0.153	—
chr2_240567468_T_G	chr2:240567468	0.020	0.025	0.153	—
chr2_240551572_G_C	chr2:240551572	0.072	0.066	0.150	—
chr2_240551603_G_C	chr2:240551603	0.082	0.117	0.094	—
chr2_240567425_G_C	chr2:240567425	0.025	0.015	0.141	—
chr2_240567428_G_A	chr2:240567428	0.078	0.000	-0.035	—
chr2_240551573_T_C	chr2:240551573	0.040	0.013	0.129	—
chr2_240567433_G_T	chr2:240567433	-0.018	-0.036	-0.129	—
chr2_240567434_G_T	chr2:240567434	0.003	-0.008	-0.129	—
chr2_240567435_G_A	chr2:240567435	0.022	-0.013	-0.129	—
chr2_240567439_C_G	chr2:240567439	-0.023	0.008	0.129	—
chr2_240431350_C_A	chr2:240431350	-0.002	-0.008	-0.124	—
chr2_240551580_T_A	chr2:240551580	0.062	0.030	0.118	—
chr2_240567424_A_C	chr2:240567424	0.007	-0.013	0.118	—
chr2_240567441_G_T	chr2:240567441	-0.028	-0.025	-0.118	—
chr2_240567446_G_T	chr2:240567446	-0.005	-0.003	-0.118	—
chr2_240567456_C_G	chr2:240567456	0.013	0.003	0.118	—
chr2_240567469_T_C	chr2:240567469	0.003	0.025	0.118	—
chr2_240567478_G_A	chr2:240567478	-0.037	-0.020	-0.118	—
chr2_240431462_C_G	chr2:240431462	-0.002	0.000	0.112	—
chr2_240551585_C_A	chr2:240551585	0.063	0.053	0.112	—
chr2_240551617_G_A	chr2:240551617	-0.026	-0.010	-0.112	—
chr2_240551640_A_T	chr2:240551640	0.048	0.015	0.109	—
chr2_240551566_T_A	chr2:240551566	0.042	0.000	0.106	—
chr2_240551678_C_A	chr2:240551678	-0.060	0.020	-0.068	—
chr2_240567426_G_A	chr2:240567426	0.000	-0.015	-0.106	—
chr2_240567443_A_C	chr2:240567443	0.002	0.000	0.106	—
chr2_240567443_A_T	chr2:240567443	0.027	0.018	0.106	—
chr2_240567444_T_A	chr2:240567444	0.015	0.013	0.106	—
chr2_240567445_A_G	chr2:240567445	-0.010	0.010	0.106	—
chr2_240567449_C_T	chr2:240567449	0.057	0.048	0.106	—
chr2_240567454_G_T	chr2:240567454	-0.013	-0.005	-0.106	—
chr2_240551665_A_T	chr2:240551665	-0.025	0.028	-0.103	—
chr2_240431369_T_A	chr2:240431369	-0.011	-0.005	-0.100	—
chr2_240431418_T_G	chr2:240431418	-0.018	-0.019	-0.100	—
chr2_240551569_C_A	chr2:240551569	-0.033	0.010	-0.100	—
chr2_240551637_A_C	chr2:240551637	0.034	0.025	0.100	—
chr2_240551639_G_C	chr2:240551639	0.031	-0.008	0.100	—
chr2_240567427_T_G	chr2:240567427	-0.057	-0.015	-0.024	—
chr2_240551572_G_T	chr2:240551572	0.037	0.018	0.097	—
chr2_240551643_A_G	chr2:240551643	0.025	-0.010	0.097	—
chr2_240551652_A_G	chr2:240551652	0.032	0.018	0.097	—
chr2_240551653_G_A	chr2:240551653	-0.028	0.010	-0.097	—
chr2_240551668_C_A	chr2:240551668	-0.036	0.028	-0.097	—
chr2_240551669_C_T	chr2:240551669	-0.033	0.030	-0.097	—
chr2_240431438_C_A	chr2:240431438	-0.012	-0.009	-0.094	—
chr2_240431465_A_T	chr2:240431465	0.032	0.010	0.094	—
chr2_240551594_G_T	chr2:240551594	-0.027	0.000	-0.094	—
chr2_240551634_T_A	chr2:240551634	-0.047	0.020	-0.094	—
chr2_240551642_A_C	chr2:240551642	0.020	0.020	0.094	—
chr2_240551650_T_A	chr2:240551650	-0.036	-0.003	-0.094	—
chr2_240551664_G_T	chr2:240551664	-0.035	0.020	-0.094	—
chr2_240551668_C_T	chr2:240551668	-0.031	0.008	-0.094	—
chr2_240551681_A_C	chr2:240551681	-0.053	0.015	-0.088	—
chr2_240567435_G_T	chr2:240567435	0.008	-0.005	-0.094	—
chr2_240567437_T_A	chr2:240567437	0.010	-0.018	-0.094	—
chr2_240567442_G_C	chr2:240567442	-0.018	-0.023	-0.094	—
chr2_240567446_G_A	chr2:240567446	0.000	-0.018	-0.094	—
chr2_240567461_A_G	chr2:240567461	0.033	0.020	0.094	—
chr2_240567462_A_C	chr2:240567462	0.037	0.008	0.094	—
chr2_240567473_C_G	chr2:240567473	0.018	0.020	0.094	—
chr2_240567473_C_T	chr2:240567473	0.022	0.010	-0.094	—
chr2_240567477_G_T	chr2:240567477	-0.030	-0.003	-0.094	—
chr2_240551682_T_A	chr2:240551682	0.052	0.117	0.076	—
chr2_240551617_G_C	chr2:240551617	-0.045	-0.005	-0.091	—
chr2_240551641_A_T	chr2:240551641	0.039	0.020	0.091	—
chr2_240551669_C_A	chr2:240551669	-0.025	0.033	-0.091	—
chr2_240431358_C_A	chr2:240431358	0.002	0.001	-0.088	—
chr2_240431480_T_G	chr2:240431480	0.012	0.009	0.088	—
chr2_240551617_G_T	chr2:240551617	-0.018	-0.033	-0.088	—
chr2_240551632_T_G	chr2:240551632	0.040	0.023	0.088	—
chr2_240551641_A_C	chr2:240551641	0.017	0.018	0.088	—
chr2_240551682_T_C	chr2:240551682	0.030	0.033	0.088	—
chr2_240551565_T_G	chr2:240551565	0.022	-0.003	0.085	—
chr2_240551635_A_G	chr2:240551635	0.040	0.048	0.085	—
chr2_240551668_C_G	chr2:240551668	-0.033	0.025	-0.085	—
chr2_240567466_C_A	chr2:240567466	0.048	0.023	0.035	—
chr2_240551556_G_T	chr2:240551556	-0.047	0.013	-0.062	—
chr2_240431365_C_A	chr2:240431365	-0.004	0.001	-0.082	—
chr2_240431383_C_T	chr2:240431383	-0.022	0.006	-0.082	—
chr2_240431441_A_G	chr2:240431441	0.002	0.004	0.082	—
chr2_240551569_C_G	chr2:240551569	-0.047	0.020	-0.082	—
chr2_240551616_T_A	chr2:240551616	0.027	0.008	0.082	—
chr2_240551660_C_T	chr2:240551660	-0.033	-0.003	-0.082	—
chr2_240551664_G_A	chr2:240551664	-0.040	0.020	-0.082	—
chr2_240567424_A_G	chr2:240567424	-0.047	-0.005	0.035	—
chr2_240567431_C_A	chr2:240567431	0.025	0.003	-0.082	—
chr2_240567431_C_G	chr2:240567431	0.010	0.000	0.082	—
chr2_240567440_T_G	chr2:240567440	-0.040	0.008	0.082	—
chr2_240567450_C_A	chr2:240567450	0.008	0.008	-0.082	—
chr2_240567461_A_C	chr2:240567461	0.030	0.003	0.082	—
chr2_240567471_T_C	chr2:240567471	0.005	-0.028	-0.082	—
chr2_240567472_C_T	chr2:240567472	-0.012	-0.008	-0.082	—
chr2_240551636_G_T	chr2:240551636	-0.022	0.000	-0.079	—
chr2_240551638_A_C	chr2:240551638	0.011	0.018	0.079	—
chr2_240567430_C_G	chr2:240567430	0.045	-0.008	-0.047	—
chr2_240551680_C_A	chr2:240551680	-0.044	0.020	-0.026	—
chr2_240431438_C_T	chr2:240431438	0.003	-0.005	-0.076	—
chr2_240431473_C_G	chr2:240431473	0.010	0.000	0.076	—
chr2_240431487_G_C	chr2:240431487	0.012	-0.001	0.076	—
chr2_240551608_T_G	chr2:240551608	-0.026	-0.013	-0.076	—
chr2_240551614_A_G	chr2:240551614	0.043	-0.008	0.044	—
chr2_240551621_A_T	chr2:240551621	0.043	-0.005	0.071	—
chr2_240551625_A_T	chr2:240551625	0.024	-0.005	0.076	—
chr2_240551631_T_C	chr2:240551631	0.020	-0.008	0.076	—
chr2_240551638_A_G	chr2:240551638	0.017	0.000	0.076	—
chr2_240551653_G_T	chr2:240551653	-0.011	0.003	-0.076	—
chr2_240551678_C_G	chr2:240551678	-0.042	0.010	-0.029	—
chr2_240551586_T_A	chr2:240551586	-0.030	-0.003	-0.074	—
chr2_240551613_G_C	chr2:240551613	0.029	0.018	0.074	—
chr2_240551683_G_T	chr2:240551683	-0.013	0.041	-0.074	—
chr2_240567466_C_T	chr2:240567466	0.042	0.010	0.035	—
chr2_240431387_A_C	chr2:240431387	0.010	0.001	0.071	—
chr2_240431477_T_G	chr2:240431477	0.004	-0.001	0.071	—
chr2_240551563_A_T	chr2:240551563	-0.025	0.003	-0.071	—
chr2_240551600_G_A	chr2:240551600	-0.034	0.008	-0.071	—
chr2_240551628_G_A	chr2:240551628	0.040	0.008	0.035	—
chr2_240551657_A_T	chr2:240551657	-0.040	0.033	-0.065	—
chr2_240567424_A_T	chr2:240567424	0.005	0.013	0.071	—
chr2_240567425_G_T	chr2:240567425	0.007	-0.010	-0.071	—
chr2_240567426_G_C	chr2:240567426	0.040	-0.028	0.024	—
chr2_240567427_T_C	chr2:240567427	0.012	0.000	0.071	—
chr2_240567431_C_T	chr2:240567431	0.002	-0.015	-0.071	—
chr2_240567433_G_A	chr2:240567433	0.015	0.003	-0.071	—
chr2_240567434_G_A	chr2:240567434	0.018	0.010	-0.071	—
chr2_240567438_C_A	chr2:240567438	0.015	-0.018	-0.071	—
chr2_240567442_G_A	chr2:240567442	-0.030	-0.020	-0.071	—
chr2_240567444_T_C	chr2:240567444	0.013	0.018	0.071	—
chr2_240567447_T_G	chr2:240567447	-0.012	0.008	0.071	—
chr2_240567453_A_G	chr2:240567453	0.015	0.008	0.071	—
chr2_240567457_C_G	chr2:240567457	0.027	-0.003	0.071	—
chr2_240567458_C_G	chr2:240567458	0.007	0.010	0.071	—
chr2_240567463_G_T	chr2:240567463	0.017	-0.010	-0.071	—
chr2_240567472_C_G	chr2:240567472	0.007	0.013	0.071	—
chr2_240567477_G_A	chr2:240567477	-0.025	0.000	-0.071	—
chr2_240551588_T_G	chr2:240551588	-0.039	0.008	-0.056	—
chr2_240551586_T_C	chr2:240551586	-0.038	0.008	-0.041	—
chr2_240551628_G_T	chr2:240551628	-0.014	-0.023	-0.068	—
chr2_240551633_T_A	chr2:240551633	-0.025	0.015	-0.068	—
chr2_240551651_T_A	chr2:240551651	-0.037	0.030	-0.068	—
chr2_240551669_C_G	chr2:240551669	-0.034	0.023	-0.068	—
chr2_240567465_C_T	chr2:240567465	0.038	0.010	0.035	—
chr2_240431350_C_G	chr2:240431350	-0.003	-0.009	-0.065	—
chr2_240431378_G_C	chr2:240431378	0.004	0.005	0.065	—
chr2_240431385_A_C	chr2:240431385	0.000	-0.006	-0.065	—
chr2_240431482_A_G	chr2:240431482	0.003	-0.001	0.065	—
chr2_240431485_G_T	chr2:240431485	0.007	0.001	-0.065	—
chr2_240551568_G_T	chr2:240551568	-0.016	0.003	-0.065	—
chr2_240551608_T_C	chr2:240551608	0.012	-0.025	0.065	—
chr2_240551631_T_G	chr2:240551631	0.010	0.000	0.065	—
chr2_240551657_A_G	chr2:240551657	0.019	0.010	0.065	—
chr2_240551664_G_C	chr2:240551664	-0.028	0.013	-0.065	—
chr2_240551556_G_C	chr2:240551556	-0.036	0.000	-0.026	—
chr2_240551570_A_G	chr2:240551570	-0.036	0.010	-0.053	—
chr2_240551569_C_T	chr2:240551569	-0.010	0.000	-0.062	—
chr2_240551681_A_T	chr2:240551681	-0.032	0.038	-0.062	—
chr2_240567436_T_G	chr2:240567436	-0.035	-0.015	-0.012	—
chr2_240567470_G_A	chr2:240567470	0.035	0.003	-0.024	—
chr2_240431350_C_T	chr2:240431350	0.002	0.000	-0.059	—
chr2_240431372_T_C	chr2:240431372	0.000	-0.003	0.059	—
chr2_240431374_C_G	chr2:240431374	-0.006	-0.006	-0.059	—
chr2_240431384_C_G	chr2:240431384	0.007	0.008	0.059	—
chr2_240431415_G_A	chr2:240431415	0.007	0.005	0.059	—
chr2_240431420_T_G	chr2:240431420	-0.006	-0.004	-0.059	—
chr2_240431424_G_T	chr2:240431424	-0.018	0.000	-0.059	—
chr2_240431485_G_A	chr2:240431485	-0.002	-0.003	-0.059	—
chr2_240551562_T_G	chr2:240551562	0.015	0.000	0.059	—
chr2_240551659_C_T	chr2:240551659	-0.021	0.020	-0.059	—
chr2_240551674_T_A	chr2:240551674	-0.017	0.010	-0.059	—
chr2_240567427_T_A	chr2:240567427	0.013	0.000	0.059	—
chr2_240567430_C_T	chr2:240567430	0.002	-0.010	-0.059	—
chr2_240567442_G_T	chr2:240567442	-0.010	-0.018	-0.059	—
chr2_240567448_T_A	chr2:240567448	-0.012	0.005	0.059	—
chr2_240567450_C_T	chr2:240567450	0.017	0.005	-0.059	—
chr2_240567451_C_A	chr2:240567451	0.000	0.008	-0.059	—
chr2_240567452_C_G	chr2:240567452	-0.003	-0.005	0.059	—
chr2_240567453_A_C	chr2:240567453	-0.002	-0.013	0.059	—
chr2_240567459_A_T	chr2:240567459	-0.008	0.010	0.059	—

Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.