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GPS2
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near GPS2
chr17:7,212,660..7,415,360, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr17_7215037_T_C | chr17:7215037 | 0.694 | 0.357 | 0.518 | — |
| chr17_7215048_G_T | chr17:7215048 | -0.619 | -0.190 | -0.565 | — |
| chr17_7215048_G_A | chr17:7215048 | -0.616 | -0.204 | -0.659 | — |
| chr17_7214768_A_G | chr17:7214768 | -0.156 | -0.367 | -1.000 | 0.0013% |
| chr17_7215042_C_A | chr17:7215042 | -0.581 | -0.207 | -0.659 | <0.001% |
| chr17_7215048_G_C | chr17:7215048 | -0.579 | -0.206 | -0.406 | — |
| chr17_7215038_G_C | chr17:7215038 | -0.557 | -0.146 | -0.647 | — |
| chr17_7215047_A_T | chr17:7215047 | 0.549 | 0.227 | 0.382 | — |
| chr17_7215038_G_A | chr17:7215038 | -0.527 | -0.118 | -0.594 | 0.0013% |
| chr17_7215046_C_A | chr17:7215046 | -0.502 | -0.211 | -0.641 | — |
| chr17_7215040_C_T | chr17:7215040 | -0.498 | -0.256 | -0.518 | — |
| chr17_7215042_C_G | chr17:7215042 | -0.493 | -0.221 | -0.518 | — |
| chr17_7214286_G_T | chr17:7214286 | 0.486 | 0.165 | 0.400 | 0.0013% |
| chr17_7215040_C_G | chr17:7215040 | -0.481 | -0.213 | -0.353 | — |
| chr17_7215044_T_A | chr17:7215044 | -0.481 | -0.195 | -0.465 | — |
| chr17_7215040_C_A | chr17:7215040 | -0.474 | -0.181 | -0.506 | — |
| chr17_7215039_C_G | chr17:7215039 | -0.471 | -0.199 | -0.571 | — |
| chr17_7215044_T_C | chr17:7215044 | -0.459 | -0.190 | -0.376 | 0.0020% |
| chr17_7215044_T_G | chr17:7215044 | -0.431 | -0.193 | -0.306 | — |
| chr17_7214951_A_T | chr17:7214951 | 0.092 | 0.079 | 0.747 | — |
| chr17_7215038_G_T | chr17:7215038 | -0.423 | -0.147 | -0.441 | — |
| chr17_7215039_C_T | chr17:7215039 | -0.411 | -0.169 | -0.559 | — |
| chr17_7214785_C_G | chr17:7214785 | 0.283 | -0.061 | 0.706 | — |
| chr17_7215049_G_C | chr17:7215049 | -0.394 | -0.123 | -0.400 | — |
| chr17_7215043_C_A | chr17:7215043 | -0.391 | -0.164 | -0.576 | — |
| chr17_7215043_C_T | chr17:7215043 | -0.391 | -0.150 | -0.624 | — |
| chr17_7215050_C_G | chr17:7215050 | -0.389 | -0.075 | -0.229 | — |
| chr17_7214782_A_C | chr17:7214782 | 0.379 | 0.071 | 0.353 | — |
| chr17_7215045_G_C | chr17:7215045 | -0.374 | -0.192 | -0.565 | — |
| chr17_7214781_G_T | chr17:7214781 | 0.366 | 0.079 | 0.388 | — |
| chr17_7214783_T_A | chr17:7214783 | 0.363 | 0.069 | 0.341 | — |
| chr17_7214445_C_T | chr17:7214445 | 0.306 | 0.221 | 0.624 | <0.001% |
| chr17_7215049_G_A | chr17:7215049 | -0.343 | -0.119 | -0.412 | — |
| chr17_7214784_G_A | chr17:7214784 | 0.338 | 0.046 | 0.271 | — |
| chr17_7214781_G_A | chr17:7214781 | 0.336 | 0.081 | 0.435 | — |
| chr17_7215003_A_C | chr17:7215003 | 0.336 | 0.108 | 0.235 | — |
| chr17_7215039_C_A | chr17:7215039 | -0.331 | -0.132 | -0.412 | — |
| chr17_7215047_A_G | chr17:7215047 | -0.329 | -0.151 | -0.200 | — |
| chr17_7214783_T_C | chr17:7214783 | 0.319 | 0.071 | 0.424 | — |
| chr17_7215043_C_G | chr17:7215043 | -0.318 | -0.159 | -0.353 | — |
| chr17_7214783_T_G | chr17:7214783 | 0.303 | 0.036 | 0.412 | — |
| chr17_7215049_G_T | chr17:7215049 | -0.301 | -0.069 | -0.312 | — |
| chr17_7214487_C_T | chr17:7214487 | -0.300 | 0.091 | -0.118 | 0.0020% |
| chr17_7214287_G_A | chr17:7214287 | 0.288 | 0.135 | 0.247 | <0.001% |
| chr17_7214830_C_G | chr17:7214830 | 0.130 | 0.249 | 0.506 | — |
| chr17_7215020_G_C | chr17:7215020 | 0.286 | 0.098 | 0.359 | — |
| chr17_7214781_G_C | chr17:7214781 | 0.280 | 0.109 | 0.471 | <0.001% |
| chr17_7214138_G_A | chr17:7214138 | -0.221 | -0.193 | -0.488 | 0.0013% |
| chr17_7214786_T_C | chr17:7214786 | 0.178 | -0.005 | 0.482 | — |
| chr17_7214438_C_A | chr17:7214438 | -0.166 | -0.165 | -0.471 | <0.001% |
| chr17_7215041_C_T | chr17:7215041 | -0.265 | -0.195 | -0.371 | — |
| chr17_7215045_G_T | chr17:7215045 | -0.263 | -0.133 | -0.412 | — |
| chr17_7214762_G_T | chr17:7214762 | 0.123 | 0.107 | 0.459 | <0.001% |
| chr17_7214642_C_G | chr17:7214642 | -0.010 | -0.010 | 0.447 | 0.0020% |
| chr17_7214763_G_A | chr17:7214763 | 0.141 | 0.089 | 0.447 | <0.001% |
| chr17_7215046_C_T | chr17:7215046 | -0.253 | -0.099 | -0.259 | — |
| chr17_7215047_A_C | chr17:7215047 | 0.250 | 0.081 | 0.241 | — |
| chr17_7215034_A_C | chr17:7215034 | -0.243 | 0.016 | -0.218 | — |
| chr17_7214642_C_A | chr17:7214642 | -0.043 | 0.018 | 0.424 | <0.001% |
| chr17_7215037_T_G | chr17:7215037 | -0.240 | -0.075 | -0.306 | — |
| chr17_7214784_G_C | chr17:7214784 | 0.238 | 0.010 | 0.282 | — |
| chr17_7214779_G_C | chr17:7214779 | 0.235 | 0.081 | 0.294 | — |
| chr17_7214298_G_C | chr17:7214298 | -0.223 | -0.076 | -0.400 | <0.001% |
| chr17_7214782_A_T | chr17:7214782 | 0.226 | 0.099 | 0.212 | — |
| chr17_7214786_T_G | chr17:7214786 | 0.121 | 0.081 | 0.400 | — |
| chr17_7215041_C_G | chr17:7215041 | -0.226 | -0.218 | -0.206 | — |
| chr17_7214784_G_T | chr17:7214784 | 0.225 | 0.051 | 0.235 | — |
| chr17_7215023_A_G | chr17:7215023 | -0.218 | 0.030 | -0.059 | — |
| chr17_7214116_A_C | chr17:7214116 | -0.151 | -0.135 | -0.376 | 0.047% |
| chr17_7214951_A_C | chr17:7214951 | 0.116 | 0.053 | 0.376 | — |
| chr17_7215037_T_A | chr17:7215037 | -0.208 | -0.065 | -0.306 | — |
| chr17_7214721_T_G | chr17:7214721 | -0.070 | -0.096 | -0.365 | 0.016% |
| chr17_7214785_C_A | chr17:7214785 | 0.185 | 0.091 | 0.365 | — |
| chr17_7214318_G_A | chr17:7214318 | -0.203 | -0.107 | -0.341 | <0.001% |
| chr17_7214454_T_C | chr17:7214454 | -0.070 | -0.185 | -0.353 | <0.001% |
| chr17_7214642_C_T | chr17:7214642 | 0.013 | 0.043 | 0.353 | <0.001% |
| chr17_7214998_T_C | chr17:7214998 | -0.200 | 0.003 | -0.135 | — |
| chr17_7215030_A_G | chr17:7215030 | -0.200 | 0.003 | 0.024 | — |
| chr17_7214969_G_C | chr17:7214969 | 0.063 | 0.033 | 0.347 | — |
| chr17_7214567_C_G | chr17:7214567 | 0.193 | 0.079 | 0.047 | <0.001% |
| chr17_7214488_G_A | chr17:7214488 | -0.183 | -0.028 | -0.212 | <0.001% |
| chr17_7214786_T_A | chr17:7214786 | 0.181 | 0.010 | 0.224 | — |
| chr17_7214782_A_G | chr17:7214782 | 0.153 | 0.081 | 0.318 | — |
| chr17_7215024_A_G | chr17:7215024 | -0.180 | -0.008 | -0.024 | — |
| chr17_7214983_G_C | chr17:7214983 | -0.178 | -0.011 | -0.300 | — |
| chr17_7215020_G_A | chr17:7215020 | 0.178 | 0.052 | 0.035 | <0.001% |
| chr17_7214983_G_A | chr17:7214983 | -0.123 | -0.044 | -0.312 | — |
| chr17_7215026_C_G | chr17:7215026 | -0.175 | -0.052 | -0.182 | — |
| chr17_7215021_G_C | chr17:7215021 | 0.170 | 0.047 | 0.159 | — |
| chr17_7214788_A_C | chr17:7214788 | 0.103 | 0.051 | 0.294 | — |
| chr17_7214966_T_G | chr17:7214966 | 0.085 | 0.025 | 0.294 | — |
| chr17_7215022_G_T | chr17:7215022 | 0.166 | 0.074 | -0.035 | — |
| chr17_7215036_G_T | chr17:7215036 | -0.166 | 0.016 | -0.194 | — |
| chr17_7214166_C_T | chr17:7214166 | 0.160 | 0.071 | 0.059 | <0.001% |
| chr17_7214409_A_C | chr17:7214409 | -0.077 | -0.066 | -0.282 | <0.001% |
| chr17_7214475_G_T | chr17:7214475 | -0.141 | -0.015 | -0.282 | 0.0013% |
| chr17_7215051_T_C | chr17:7215051 | -0.156 | -0.053 | -0.118 | — |
| chr17_7214311_C_A | chr17:7214311 | -0.053 | -0.127 | -0.271 | <0.001% |
| chr17_7214759_C_T | chr17:7214759 | -0.106 | -0.058 | -0.271 | <0.001% |
| chr17_7214799_A_T | chr17:7214799 | 0.007 | -0.048 | 0.271 | — |
| chr17_7214882_A_G | chr17:7214882 | 0.063 | -0.005 | 0.271 | — |
| chr17_7215033_C_T | chr17:7215033 | -0.135 | 0.024 | -0.271 | — |
| chr17_7215020_G_T | chr17:7215020 | 0.151 | -0.013 | -0.053 | — |
| chr17_7215024_A_T | chr17:7215024 | -0.151 | -0.024 | -0.188 | — |
| chr17_7215026_C_T | chr17:7215026 | 0.151 | 0.069 | 0.065 | — |
| chr17_7214955_T_G | chr17:7214955 | 0.088 | 0.030 | 0.265 | — |
| chr17_7214968_G_C | chr17:7214968 | 0.135 | 0.020 | 0.265 | — |
| chr17_7214982_C_T | chr17:7214982 | -0.030 | 0.003 | -0.265 | — |
| chr17_7215051_T_G | chr17:7215051 | 0.148 | 0.065 | 0.206 | — |
| chr17_7214311_C_G | chr17:7214311 | -0.116 | -0.152 | -0.259 | <0.001% |
| chr17_7214799_A_G | chr17:7214799 | -0.003 | -0.058 | 0.259 | — |
| chr17_7214810_G_A | chr17:7214810 | -0.037 | -0.033 | 0.259 | — |
| chr17_7214950_A_C | chr17:7214950 | 0.047 | 0.071 | 0.259 | — |
| chr17_7214965_C_A | chr17:7214965 | -0.111 | 0.001 | -0.259 | — |
| chr17_7214974_T_G | chr17:7214974 | 0.058 | -0.008 | 0.259 | — |
| chr17_7214983_G_T | chr17:7214983 | -0.123 | -0.005 | -0.259 | — |
| chr17_7215028_G_C | chr17:7215028 | -0.027 | -0.036 | 0.259 | — |
| chr17_7215035_T_C | chr17:7215035 | -0.121 | -0.096 | 0.259 | — |
| chr17_7215045_G_A | chr17:7215045 | 0.146 | 0.057 | 0.041 | — |
| chr17_7214446_C_G | chr17:7214446 | -0.143 | -0.020 | 0.024 | <0.001% |
| chr17_7214785_C_T | chr17:7214785 | 0.143 | 0.038 | 0.153 | — |
| chr17_7214990_C_G | chr17:7214990 | 0.060 | -0.003 | 0.253 | <0.001% |
| chr17_7215012_A_G | chr17:7215012 | 0.143 | 0.084 | 0.224 | — |
| chr17_7215036_G_C | chr17:7215036 | 0.143 | 0.088 | -0.053 | — |
| chr17_7214390_A_T | chr17:7214390 | 0.141 | 0.076 | 0.200 | 0.0013% |
| chr17_7214966_T_C | chr17:7214966 | 0.110 | 0.020 | 0.247 | <0.001% |
| chr17_7214979_G_C | chr17:7214979 | -0.120 | -0.028 | -0.247 | — |
| chr17_7214979_G_T | chr17:7214979 | -0.103 | -0.019 | -0.247 | — |
| chr17_7214552_C_T | chr17:7214552 | 0.136 | 0.135 | 0.082 | 0.0013% |
| chr17_7214967_G_C | chr17:7214967 | 0.123 | 0.030 | 0.241 | — |
| chr17_7215034_A_G | chr17:7215034 | 0.135 | 0.102 | 0.006 | — |
| chr17_7214685_A_T | chr17:7214685 | 0.037 | -0.005 | 0.235 | <0.001% |
| chr17_7215042_C_T | chr17:7215042 | -0.133 | -0.086 | -0.176 | — |
| chr17_7214734_A_C | chr17:7214734 | 0.130 | 0.023 | 0.200 | 0.0020% |
| chr17_7214947_T_C | chr17:7214947 | 0.082 | 0.074 | 0.229 | — |
| chr17_7214951_A_G | chr17:7214951 | 0.073 | 0.046 | 0.229 | — |
| chr17_7214328_C_G | chr17:7214328 | -0.128 | -0.036 | -0.129 | 0.066% |
| chr17_7214971_A_G | chr17:7214971 | -0.128 | 0.009 | -0.159 | — |
| chr17_7215015_A_G | chr17:7215015 | 0.128 | 0.008 | 0.141 | — |
| chr17_7214351_G_T | chr17:7214351 | -0.126 | -0.061 | -0.024 | <0.001% |
| chr17_7214441_C_G | chr17:7214441 | 0.126 | -0.071 | 0.141 | <0.001% |
| chr17_7214686_G_A | chr17:7214686 | -0.010 | 0.112 | -0.224 | <0.001% |
| chr17_7214707_G_C | chr17:7214707 | 0.126 | -0.008 | 0.141 | <0.001% |
| chr17_7214788_A_G | chr17:7214788 | 0.088 | 0.015 | 0.224 | — |
| chr17_7214798_G_A | chr17:7214798 | 0.030 | -0.023 | 0.224 | — |
| chr17_7214799_A_C | chr17:7214799 | 0.027 | -0.066 | 0.224 | — |
| chr17_7214961_A_C | chr17:7214961 | 0.073 | 0.015 | 0.224 | — |
| chr17_7214979_G_A | chr17:7214979 | -0.083 | -0.025 | -0.224 | — |
| chr17_7215023_A_T | chr17:7215023 | -0.125 | 0.066 | -0.047 | — |
| chr17_7214350_G_C | chr17:7214350 | -0.123 | -0.074 | -0.094 | <0.001% |
| chr17_7214982_C_A | chr17:7214982 | -0.075 | -0.003 | -0.218 | — |
| chr17_7215031_G_T | chr17:7215031 | -0.095 | -0.053 | -0.218 | — |
| chr17_7215014_C_A | chr17:7215014 | -0.121 | -0.036 | -0.100 | — |
| chr17_7214131_A_T | chr17:7214131 | -0.072 | -0.013 | -0.212 | <0.001% |
| chr17_7214283_G_C | chr17:7214283 | 0.120 | 0.071 | 0.071 | <0.001% |
| chr17_7214294_C_A | chr17:7214294 | -0.062 | -0.013 | -0.212 | <0.001% |
| chr17_7214779_G_T | chr17:7214779 | 0.072 | 0.043 | 0.212 | — |
| chr17_7214780_A_C | chr17:7214780 | 0.106 | 0.069 | 0.212 | — |
| chr17_7214790_A_G | chr17:7214790 | 0.007 | -0.028 | 0.212 | — |
| chr17_7214809_A_C | chr17:7214809 | 0.020 | -0.023 | 0.212 | — |
| chr17_7214880_G_A | chr17:7214880 | -0.047 | -0.030 | -0.212 | — |
| chr17_7214942_A_C | chr17:7214942 | 0.068 | 0.048 | 0.212 | — |
| chr17_7214905_T_G | chr17:7214905 | 0.057 | 0.038 | 0.206 | — |
| chr17_7214953_A_C | chr17:7214953 | 0.055 | 0.020 | 0.206 | — |
| chr17_7214961_A_G | chr17:7214961 | 0.023 | 0.000 | 0.206 | — |
| chr17_7214978_C_T | chr17:7214978 | -0.108 | -0.028 | -0.206 | — |
| chr17_7215007_C_G | chr17:7215007 | 0.116 | -0.010 | 0.171 | — |
| chr17_7215011_C_G | chr17:7215011 | 0.116 | 0.069 | 0.171 | — |
| chr17_7214434_T_C | chr17:7214434 | 0.038 | -0.013 | -0.200 | 0.0013% |
| chr17_7214474_T_C | chr17:7214474 | -0.020 | -0.030 | -0.200 | <0.001% |
| chr17_7214629_G_A | chr17:7214629 | -0.113 | -0.094 | -0.200 | <0.001% |
| chr17_7214669_C_T | chr17:7214669 | 0.057 | 0.056 | 0.200 | 0.0033% |
| chr17_7214809_A_G | chr17:7214809 | -0.037 | -0.081 | 0.200 | — |
| chr17_7214853_G_C | chr17:7214853 | 0.113 | 0.033 | 0.165 | — |
| chr17_7214882_A_C | chr17:7214882 | 0.097 | 0.028 | 0.200 | <0.001% |
| chr17_7214916_C_A | chr17:7214916 | -0.048 | -0.030 | -0.200 | — |
| chr17_7214916_C_G | chr17:7214916 | -0.025 | -0.008 | -0.200 | — |
| chr17_7214963_A_C | chr17:7214963 | 0.022 | 0.010 | 0.200 | — |
| chr17_7214998_T_G | chr17:7214998 | 0.075 | 0.020 | 0.200 | — |
| chr17_7215013_G_T | chr17:7215013 | -0.113 | 0.022 | 0.035 | — |
| chr17_7215019_G_C | chr17:7215019 | 0.113 | -0.032 | 0.194 | — |
| chr17_7214972_G_C | chr17:7214972 | -0.111 | -0.003 | -0.153 | — |
| chr17_7214692_C_T | chr17:7214692 | 0.110 | 0.124 | -0.024 | <0.001% |
| chr17_7214699_C_T | chr17:7214699 | 0.110 | 0.066 | 0.165 | <0.001% |
| chr17_7214946_A_T | chr17:7214946 | -0.110 | -0.089 | -0.129 | — |
| chr17_7214957_A_G | chr17:7214957 | 0.082 | 0.033 | 0.194 | — |
| chr17_7215035_T_G | chr17:7215035 | 0.110 | 0.114 | -0.006 | — |
| chr17_7214934_A_C | chr17:7214934 | 0.108 | 0.058 | 0.153 | — |
| chr17_7214159_A_G | chr17:7214159 | 0.023 | 0.066 | 0.188 | <0.001% |
| chr17_7214719_C_G | chr17:7214719 | 0.100 | -0.112 | 0.188 | <0.001% |
| chr17_7214794_G_T | chr17:7214794 | -0.043 | -0.018 | -0.188 | — |
| chr17_7214795_A_C | chr17:7214795 | 0.106 | 0.008 | 0.118 | — |
| chr17_7214811_A_C | chr17:7214811 | -0.042 | -0.086 | 0.188 | — |
| chr17_7214811_A_T | chr17:7214811 | -0.042 | -0.056 | 0.188 | — |
| chr17_7214814_A_C | chr17:7214814 | 0.037 | -0.038 | 0.188 | — |
| chr17_7214838_T_C | chr17:7214838 | 0.023 | -0.066 | 0.188 | — |
| chr17_7214870_G_C | chr17:7214870 | 0.003 | -0.005 | 0.188 | — |
| chr17_7214957_A_C | chr17:7214957 | 0.083 | 0.008 | 0.188 | — |
| chr17_7214978_C_A | chr17:7214978 | -0.038 | -0.018 | -0.188 | — |
| chr17_7215036_G_A | chr17:7215036 | 0.106 | 0.067 | -0.088 | — |
Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.