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HPCAL1
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near HPCAL1
chr2:10,202,903..10,527,617, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr2_10270730_C_A | chr2:10270730 | 0.784 | 0.168 | 1.000 | — |
| chr2_10270730_C_G | chr2:10270730 | 1.000 | 0.198 | 1.000 | — |
| chr2_10270730_C_T | chr2:10270730 | 0.953 | 0.213 | 1.000 | — |
| chr2_10270729_C_G | chr2:10270729 | 0.905 | 0.109 | 1.000 | — |
| chr2_10270729_C_A | chr2:10270729 | 0.747 | 0.211 | 0.871 | — |
| chr2_10270780_G_A | chr2:10270780 | 0.725 | 0.513 | 0.482 | — |
| chr2_10270732_G_C | chr2:10270732 | -0.642 | -0.330 | -0.753 | — |
| chr2_10270729_C_T | chr2:10270729 | 0.534 | 0.137 | 0.729 | — |
| chr2_10270780_G_T | chr2:10270780 | 0.463 | 0.404 | 0.541 | — |
| chr2_10270773_T_A | chr2:10270773 | -0.459 | -0.457 | -0.565 | — |
| chr2_10270753_G_A | chr2:10270753 | -0.454 | -0.327 | -0.659 | <0.001% |
| chr2_10270750_G_T | chr2:10270750 | -0.448 | -0.178 | -0.471 | — |
| chr2_10270776_G_T | chr2:10270776 | -0.398 | -0.338 | -0.600 | — |
| chr2_10270754_T_A | chr2:10270754 | 0.373 | 0.041 | 0.247 | — |
| chr2_10270742_G_C | chr2:10270742 | 0.371 | 0.147 | 0.635 | — |
| chr2_10270779_A_T | chr2:10270779 | -0.371 | -0.310 | -0.412 | — |
| chr2_10270732_G_T | chr2:10270732 | -0.366 | -0.160 | -0.388 | 0.0026% |
| chr2_10270749_G_A | chr2:10270749 | -0.364 | -0.175 | -0.353 | <0.001% |
| chr2_10270733_T_G | chr2:10270733 | -0.361 | -0.051 | -0.435 | — |
| chr2_10270750_G_C | chr2:10270750 | -0.133 | -0.094 | -0.635 | <0.001% |
| chr2_10270785_C_T | chr2:10270785 | -0.346 | -0.284 | -0.365 | 0.0013% |
| chr2_10270732_G_A | chr2:10270732 | -0.343 | -0.206 | -0.353 | 0.0059% |
| chr2_10270748_G_T | chr2:10270748 | -0.343 | -0.183 | -0.353 | — |
| chr2_10270750_G_A | chr2:10270750 | -0.329 | -0.190 | -0.388 | — |
| chr2_10270760_C_G | chr2:10270760 | -0.256 | -0.112 | -0.576 | — |
| chr2_10270776_G_A | chr2:10270776 | -0.326 | -0.266 | -0.565 | — |
| chr2_10270756_C_G | chr2:10270756 | -0.319 | -0.152 | -0.459 | — |
| chr2_10270752_G_T | chr2:10270752 | -0.308 | -0.221 | -0.306 | — |
| chr2_10270776_G_C | chr2:10270776 | -0.300 | -0.277 | -0.459 | — |
| chr2_10270749_G_T | chr2:10270749 | -0.281 | -0.127 | -0.224 | — |
| chr2_10270777_G_T | chr2:10270777 | -0.280 | -0.162 | -0.388 | — |
| chr2_10270784_C_T | chr2:10270784 | -0.278 | -0.228 | -0.329 | — |
| chr2_10270784_C_G | chr2:10270784 | -0.276 | -0.206 | -0.212 | — |
| chr2_10270742_G_T | chr2:10270742 | 0.275 | 0.378 | 0.471 | — |
| chr2_10270760_C_A | chr2:10270760 | -0.196 | -0.058 | -0.482 | — |
| chr2_10270736_G_C | chr2:10270736 | 0.270 | 0.129 | 0.435 | — |
| chr2_10270760_C_T | chr2:10270760 | -0.180 | -0.089 | -0.471 | — |
| chr2_10270749_G_C | chr2:10270749 | -0.263 | -0.157 | -0.176 | — |
| chr2_10270775_G_C | chr2:10270775 | -0.263 | -0.211 | -0.353 | — |
| chr2_10270731_C_A | chr2:10270731 | 0.260 | -0.020 | 0.435 | — |
| chr2_10270737_C_G | chr2:10270737 | 0.260 | 0.122 | 0.365 | — |
| chr2_10270781_T_A | chr2:10270781 | -0.255 | -0.261 | -0.212 | — |
| chr2_10270761_T_C | chr2:10270761 | 0.250 | 0.091 | 0.035 | — |
| chr2_10270743_C_T | chr2:10270743 | -0.211 | -0.102 | -0.435 | — |
| chr2_10270785_C_G | chr2:10270785 | -0.243 | -0.135 | -0.071 | — |
| chr2_10270740_G_C | chr2:10270740 | 0.240 | 0.005 | 0.141 | — |
| chr2_10270778_A_T | chr2:10270778 | -0.213 | -0.145 | -0.424 | — |
| chr2_10270748_G_C | chr2:10270748 | -0.236 | -0.142 | -0.282 | — |
| chr2_10270769_G_T | chr2:10270769 | -0.228 | -0.193 | -0.376 | — |
| chr2_10270743_C_G | chr2:10270743 | -0.211 | -0.152 | -0.400 | — |
| chr2_10270758_T_A | chr2:10270758 | -0.223 | -0.071 | -0.400 | — |
| chr2_10270752_G_A | chr2:10270752 | -0.225 | -0.137 | 0.024 | — |
| chr2_10270782_T_G | chr2:10270782 | -0.223 | -0.150 | -0.106 | — |
| chr2_10270783_C_G | chr2:10270783 | -0.218 | -0.190 | -0.118 | — |
| chr2_10270739_A_G | chr2:10270739 | 0.216 | 0.180 | 0.141 | — |
| chr2_10270756_C_A | chr2:10270756 | -0.216 | -0.076 | -0.282 | — |
| chr2_10270733_T_A | chr2:10270733 | -0.211 | -0.102 | -0.176 | — |
| chr2_10238363_G_C | chr2:10238363 | -0.031 | -0.052 | -0.371 | — |
| chr2_10270736_G_T | chr2:10270736 | 0.210 | 0.053 | 0.212 | 0.0033% |
| chr2_10270757_T_A | chr2:10270757 | -0.208 | -0.129 | -0.341 | — |
| chr2_10270758_T_C | chr2:10270758 | -0.205 | -0.074 | -0.329 | — |
| chr2_10270784_C_A | chr2:10270784 | -0.201 | -0.102 | -0.165 | — |
| chr2_10270744_A_G | chr2:10270744 | -0.042 | -0.104 | 0.353 | — |
| chr2_10270751_A_G | chr2:10270751 | -0.106 | 0.076 | -0.353 | — |
| chr2_10270754_T_G | chr2:10270754 | -0.035 | -0.058 | -0.353 | — |
| chr2_10270755_G_C | chr2:10270755 | -0.200 | -0.041 | -0.282 | <0.001% |
| chr2_10270772_G_T | chr2:10270772 | -0.200 | -0.213 | -0.165 | — |
| chr2_10270778_A_G | chr2:10270778 | -0.030 | 0.038 | -0.353 | — |
| chr2_10270738_G_A | chr2:10270738 | -0.193 | -0.074 | -0.200 | <0.001% |
| chr2_10270771_G_T | chr2:10270771 | -0.193 | -0.188 | -0.212 | <0.001% |
| chr2_10270774_T_C | chr2:10270774 | 0.111 | 0.307 | 0.329 | <0.001% |
| chr2_10270783_C_A | chr2:10270783 | -0.180 | -0.228 | -0.271 | — |
| chr2_10270751_A_C | chr2:10270751 | 0.178 | 0.102 | 0.235 | — |
| chr2_10270778_A_C | chr2:10270778 | -0.175 | -0.071 | -0.176 | — |
| chr2_10270745_G_T | chr2:10270745 | -0.171 | -0.030 | -0.200 | — |
| chr2_10270773_T_G | chr2:10270773 | -0.171 | -0.081 | -0.118 | — |
| chr2_10270785_C_A | chr2:10270785 | -0.170 | -0.099 | -0.106 | — |
| chr2_10270738_G_T | chr2:10270738 | -0.166 | -0.099 | -0.188 | — |
| chr2_10270774_T_G | chr2:10270774 | -0.106 | -0.046 | -0.294 | — |
| chr2_10270781_T_G | chr2:10270781 | -0.163 | -0.033 | -0.024 | — |
| chr2_10270783_C_T | chr2:10270783 | -0.163 | -0.091 | -0.188 | — |
| chr2_10270759_C_G | chr2:10270759 | -0.040 | -0.048 | -0.282 | — |
| chr2_10238354_G_T | chr2:10238354 | 0.010 | 0.024 | 0.276 | — |
| chr2_10270781_T_C | chr2:10270781 | -0.156 | -0.175 | -0.024 | — |
| chr2_10270782_T_A | chr2:10270782 | -0.156 | -0.124 | -0.235 | — |
| chr2_10270759_C_A | chr2:10270759 | 0.020 | -0.005 | -0.271 | — |
| chr2_10270759_C_T | chr2:10270759 | 0.007 | -0.028 | -0.271 | — |
| chr2_10270775_G_T | chr2:10270775 | -0.128 | -0.183 | -0.271 | — |
| chr2_10270771_G_A | chr2:10270771 | -0.150 | -0.203 | -0.082 | — |
| chr2_10270745_G_C | chr2:10270745 | -0.143 | 0.018 | -0.118 | — |
| chr2_10270770_A_C | chr2:10270770 | 0.143 | -0.127 | -0.094 | — |
| chr2_10270735_G_C | chr2:10270735 | 0.095 | -0.051 | 0.247 | — |
| chr2_10270748_G_A | chr2:10270748 | -0.140 | -0.046 | -0.200 | <0.001% |
| chr2_10270756_C_T | chr2:10270756 | -0.106 | -0.056 | -0.247 | — |
| chr2_10270765_C_A | chr2:10270765 | 0.138 | 0.178 | 0.200 | — |
| chr2_10270739_A_C | chr2:10270739 | 0.133 | 0.000 | 0.106 | — |
| chr2_10270758_T_G | chr2:10270758 | -0.097 | -0.051 | -0.235 | — |
| chr2_10270768_A_C | chr2:10270768 | -0.133 | -0.175 | -0.188 | — |
| chr2_10270782_T_C | chr2:10270782 | 0.073 | 0.084 | -0.235 | — |
| chr2_10270734_G_A | chr2:10270734 | -0.131 | -0.079 | -0.153 | — |
| chr2_10270734_G_C | chr2:10270734 | 0.131 | 0.056 | 0.212 | — |
| chr2_10238300_C_A | chr2:10238300 | 0.057 | 0.041 | -0.229 | — |
| chr2_10238330_G_T | chr2:10238330 | 0.078 | 0.062 | -0.229 | — |
| chr2_10270744_A_C | chr2:10270744 | 0.106 | 0.043 | 0.224 | — |
| chr2_10270757_T_C | chr2:10270757 | -0.126 | 0.000 | -0.165 | — |
| chr2_10270752_G_C | chr2:10270752 | -0.125 | -0.053 | -0.035 | — |
| chr2_10270739_A_T | chr2:10270739 | 0.121 | 0.074 | 0.153 | — |
| chr2_10270753_G_C | chr2:10270753 | -0.121 | -0.063 | -0.035 | — |
| chr2_10238368_T_C | chr2:10238368 | -0.018 | -0.016 | -0.212 | — |
| chr2_10270755_G_T | chr2:10270755 | -0.120 | -0.076 | -0.200 | — |
| chr2_10270772_G_A | chr2:10270772 | -0.118 | -0.239 | -0.176 | — |
| chr2_10270741_G_C | chr2:10270741 | 0.111 | -0.076 | -0.012 | — |
| chr2_10270779_A_G | chr2:10270779 | -0.111 | -0.041 | -0.153 | — |
| chr2_10270757_T_G | chr2:10270757 | -0.108 | 0.008 | -0.176 | — |
| chr2_10270736_G_A | chr2:10270736 | 0.068 | 0.020 | 0.188 | — |
| chr2_10270762_G_C | chr2:10270762 | 0.013 | -0.079 | -0.188 | — |
| chr2_10270762_G_T | chr2:10270762 | -0.073 | -0.074 | -0.188 | — |
| chr2_10270768_A_G | chr2:10270768 | 0.057 | 0.010 | 0.188 | — |
| chr2_10270768_A_T | chr2:10270768 | -0.005 | -0.104 | -0.188 | — |
| chr2_10270755_G_A | chr2:10270755 | -0.105 | 0.038 | -0.059 | — |
| chr2_10270764_G_T | chr2:10270764 | -0.103 | -0.038 | 0.012 | — |
| chr2_10270764_G_A | chr2:10270764 | -0.101 | -0.046 | -0.012 | — |
| chr2_10270765_C_G | chr2:10270765 | 0.087 | 0.310 | -0.129 | — |
| chr2_10270767_T_G | chr2:10270767 | 0.047 | 0.056 | 0.176 | — |
| chr2_10270770_A_T | chr2:10270770 | 0.020 | -0.124 | -0.176 | — |
| chr2_10270777_G_C | chr2:10270777 | -0.060 | -0.010 | -0.176 | — |
| chr2_10264189_G_C | chr2:10264189 | 0.057 | 0.091 | 0.174 | — |
| chr2_10270764_G_C | chr2:10270764 | -0.097 | -0.010 | -0.035 | <0.001% |
| chr2_10270737_C_T | chr2:10270737 | -0.095 | 0.013 | -0.153 | 0.022% |
| chr2_10270754_T_C | chr2:10270754 | 0.077 | -0.003 | 0.165 | — |
| chr2_10270765_C_T | chr2:10270765 | 0.093 | 0.185 | 0.012 | — |
| chr2_10270766_T_C | chr2:10270766 | -0.092 | 0.003 | 0.012 | — |
| chr2_10270772_G_C | chr2:10270772 | -0.092 | -0.094 | 0.012 | — |
| chr2_10238378_G_C | chr2:10238378 | 0.019 | 0.027 | 0.159 | — |
| chr2_10270735_G_A | chr2:10270735 | 0.090 | -0.003 | 0.153 | 0.0013% |
| chr2_10270747_A_C | chr2:10270747 | -0.088 | -0.046 | -0.094 | — |
| chr2_10270740_G_A | chr2:10270740 | -0.035 | -0.127 | -0.153 | — |
| chr2_10270775_G_A | chr2:10270775 | -0.087 | 0.043 | -0.071 | — |
| chr2_10270734_G_T | chr2:10270734 | -0.085 | -0.048 | -0.024 | — |
| chr2_10270763_G_T | chr2:10270763 | -0.085 | -0.157 | -0.141 | — |
| chr2_10270770_A_G | chr2:10270770 | -0.085 | -0.043 | -0.106 | — |
| chr2_10270753_G_T | chr2:10270753 | -0.083 | -0.089 | -0.094 | — |
| chr2_10238322_C_T | chr2:10238322 | -0.062 | -0.023 | 0.141 | — |
| chr2_10238379_A_T | chr2:10238379 | 0.072 | 0.043 | -0.141 | — |
| chr2_10270747_A_G | chr2:10270747 | -0.065 | 0.025 | -0.141 | — |
| chr2_10270767_T_C | chr2:10270767 | 0.080 | 0.112 | 0.106 | — |
| chr2_10238359_C_A | chr2:10238359 | 0.017 | 0.022 | 0.135 | — |
| chr2_10270779_A_C | chr2:10270779 | -0.077 | -0.015 | -0.094 | — |
| chr2_10270740_G_T | chr2:10270740 | -0.013 | -0.099 | -0.129 | — |
| chr2_10270741_G_T | chr2:10270741 | 0.043 | -0.109 | -0.129 | — |
| chr2_10270745_G_A | chr2:10270745 | 0.073 | 0.124 | 0.129 | — |
| chr2_10270777_G_A | chr2:10270777 | -0.073 | 0.041 | 0.000 | — |
| chr2_10270774_T_A | chr2:10270774 | -0.072 | -0.025 | -0.024 | — |
| chr2_10238296_C_G | chr2:10238296 | 0.028 | 0.019 | -0.124 | — |
| chr2_10238322_C_G | chr2:10238322 | -0.040 | -0.028 | 0.124 | — |
| chr2_10270741_G_A | chr2:10270741 | 0.070 | -0.089 | -0.082 | — |
| chr2_10270786_G_A | chr2:10270786 | 0.070 | 0.104 | 0.082 | 0.0026% |
| chr2_10270763_G_C | chr2:10270763 | -0.037 | -0.135 | -0.118 | — |
| chr2_10270731_C_G | chr2:10270731 | -0.042 | -0.198 | -0.035 | — |
| chr2_10270761_T_A | chr2:10270761 | 0.065 | 0.043 | -0.106 | — |
| chr2_10270744_A_T | chr2:10270744 | 0.063 | -0.015 | 0.047 | — |
| chr2_10270738_G_C | chr2:10270738 | -0.062 | -0.003 | 0.059 | — |
| chr2_10238325_G_T | chr2:10238325 | -0.007 | 0.020 | -0.106 | — |
| chr2_10238328_A_T | chr2:10238328 | -0.004 | 0.004 | 0.106 | — |
| chr2_10270731_C_T | chr2:10270731 | -0.013 | -0.129 | 0.106 | 0.197% |
| chr2_10270746_A_T | chr2:10270746 | -0.060 | -0.020 | -0.024 | — |
| chr2_10238292_C_A | chr2:10238292 | 0.024 | 0.009 | -0.100 | — |
| chr2_10238300_C_G | chr2:10238300 | 0.017 | 0.010 | -0.100 | — |
| chr2_10238318_G_A | chr2:10238318 | 0.017 | 0.006 | -0.100 | — |
| chr2_10238320_G_T | chr2:10238320 | 0.027 | 0.018 | -0.100 | — |
| chr2_10270743_C_A | chr2:10270743 | -0.033 | -0.170 | -0.094 | — |
| chr2_10270771_G_C | chr2:10270771 | -0.050 | -0.165 | 0.024 | — |
| chr2_10238299_G_A | chr2:10238299 | 0.004 | 0.001 | -0.094 | — |
| chr2_10238318_G_C | chr2:10238318 | -0.002 | -0.003 | 0.094 | — |
| chr2_10238328_A_C | chr2:10238328 | -0.007 | 0.000 | 0.094 | — |
| chr2_10238360_A_T | chr2:10238360 | -0.004 | 0.014 | 0.094 | — |
| chr2_10238361_C_G | chr2:10238361 | 0.000 | 0.014 | 0.094 | — |
| chr2_10238362_C_G | chr2:10238362 | 0.006 | 0.016 | 0.094 | — |
| chr2_10238377_G_A | chr2:10238377 | 0.000 | -0.001 | -0.094 | — |
| chr2_10238415_C_A | chr2:10238415 | -0.018 | 0.004 | -0.094 | — |
| chr2_10270763_G_A | chr2:10270763 | -0.052 | -0.135 | -0.082 | — |
| chr2_10238344_C_G | chr2:10238344 | 0.051 | 0.027 | -0.006 | — |
| chr2_10264154_C_G | chr2:10264154 | 0.014 | 0.029 | 0.089 | — |
| chr2_10238290_G_T | chr2:10238290 | 0.012 | 0.015 | -0.088 | — |
| chr2_10238314_C_G | chr2:10238314 | -0.002 | -0.005 | 0.088 | — |
| chr2_10238360_A_C | chr2:10238360 | -0.005 | -0.009 | -0.088 | — |
| chr2_10238361_C_A | chr2:10238361 | -0.001 | 0.015 | 0.088 | — |
| chr2_10238362_C_A | chr2:10238362 | 0.007 | 0.016 | 0.088 | <0.001% |
| chr2_10238365_C_G | chr2:10238365 | 0.015 | 0.000 | 0.088 | — |
| chr2_10238386_T_C | chr2:10238386 | 0.012 | 0.004 | 0.088 | — |
| chr2_10238302_G_A | chr2:10238302 | 0.015 | 0.015 | -0.082 | — |
| chr2_10238320_G_A | chr2:10238320 | 0.027 | 0.018 | -0.082 | — |
| chr2_10238386_T_A | chr2:10238386 | -0.022 | -0.008 | 0.082 | — |
| chr2_10238386_T_G | chr2:10238386 | -0.015 | -0.011 | 0.082 | — |
| chr2_10270746_A_C | chr2:10270746 | 0.007 | 0.020 | 0.082 | — |
| chr2_10270746_A_G | chr2:10270746 | 0.045 | 0.010 | 0.082 | — |
| chr2_10270766_T_G | chr2:10270766 | -0.008 | 0.051 | -0.082 | — |
| chr2_10270773_T_C | chr2:10270773 | 0.017 | -0.056 | 0.082 | — |
| chr2_10270742_G_A | chr2:10270742 | 0.045 | -0.030 | 0.059 | — |
| chr2_10270769_G_A | chr2:10270769 | 0.045 | 0.107 | 0.071 | — |
Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.