Home / Gene

LOC100288175

This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.

Scored variants near LOC100288175

chr1:959,733..1,166,453, gene body plus 100 kb. Showing the strongest 200 by effect size.

Variant	Position	PXR	FXR	AhR	AF
chr1_961229_C_T	chr1:961229	0.418	0.137	1.000	<0.001%
chr1_960580_C_G	chr1:960580	-0.315	-0.202	-1.000	0.0026%
chr1_960815_G_T	chr1:960815	0.479	0.027	1.000	<0.001%
chr1_966368_A_T	chr1:966368	0.314	0.218	0.847	—
chr1_960815_G_A	chr1:960815	0.387	0.016	0.778	0.0013%
chr1_966393_G_C	chr1:966393	0.349	-0.010	0.094	—
chr1_960537_G_T	chr1:960537	-0.348	-0.028	-0.257	0.049%
chr1_966231_G_C	chr1:966231	0.131	0.051	0.600	—
chr1_961000_G_T	chr1:961000	0.306	0.055	0.588	<0.001%
chr1_961225_C_T	chr1:961225	0.044	0.043	0.588	<0.001%
chr1_966384_T_C	chr1:966384	0.060	-0.030	0.588	—
chr1_961254_C_G	chr1:961254	-0.138	-0.121	-0.574	0.0013%
chr1_966383_G_A	chr1:966383	0.323	-0.169	0.471	—
chr1_966390_C_G	chr1:966390	0.314	-0.006	-0.176	—
chr1_966230_G_C	chr1:966230	0.068	-0.003	0.553	—
chr1_966367_G_C	chr1:966367	-0.097	-0.065	-0.529	—
chr1_960816_T_G	chr1:960816	0.269	0.011	0.525	0.0048%
chr1_961175_G_A	chr1:961175	0.030	0.044	0.518	0.0013%
chr1_960473_C_G	chr1:960473	-0.166	-0.053	-0.515	<0.001%
chr1_966381_A_C	chr1:966381	0.185	-0.010	0.506	—
chr1_961181_G_T	chr1:961181	0.030	0.038	0.494	0.0026%
chr1_966231_G_A	chr1:966231	0.116	0.041	0.494	—
chr1_961172_G_A	chr1:961172	0.042	0.039	0.485	0.0013%
chr1_966367_G_T	chr1:966367	-0.130	-0.056	-0.482	—
chr1_966371_T_G	chr1:966371	0.115	0.033	0.482	—
chr1_966384_T_A	chr1:966384	-0.018	-0.058	0.482	—
chr1_966179_G_A	chr1:966179	0.098	0.034	0.471	71.7%
chr1_961190_G_T	chr1:961190	0.043	0.035	0.465	0.0013%
chr1_961309_A_G	chr1:961309	-0.016	-0.028	-0.459	<0.001%
chr1_966382_G_C	chr1:966382	-0.007	-0.066	0.459	—
chr1_961215_C_A	chr1:961215	-0.003	0.042	0.447	<0.001%
chr1_966321_G_A	chr1:966321	-0.082	-0.066	-0.447	—
chr1_960803_G_C	chr1:960803	0.032	-0.007	0.434	<0.001%
chr1_961224_C_T	chr1:961224	0.011	0.042	0.429	<0.001%
chr1_966230_G_A	chr1:966230	0.088	0.030	0.424	—
chr1_966385_A_G	chr1:966385	-0.215	-0.127	-0.424	<0.001%
chr1_966281_G_C	chr1:966281	0.233	0.074	0.165	—
chr1_961135_C_T	chr1:961135	0.040	0.025	0.409	0.0020%
chr1_961131_C_T	chr1:961131	0.019	0.032	0.400	0.0027%
chr1_961182_C_T	chr1:961182	0.038	0.031	0.400	0.0013%
chr1_966231_G_T	chr1:966231	0.105	0.038	0.400	—
chr1_960887_G_A	chr1:960887	0.106	0.020	0.399	<0.001%
chr1_961306_C_A	chr1:961306	0.015	0.039	0.391	0.0033%
chr1_961278_G_T	chr1:961278	0.000	0.043	0.385	<0.001%
chr1_960803_G_T	chr1:960803	-0.061	-0.010	0.384	<0.001%
chr1_961228_C_T	chr1:961228	0.028	0.030	0.382	0.0013%
chr1_966232_G_A	chr1:966232	0.057	-0.003	0.376	0.0026%
chr1_966232_G_C	chr1:966232	0.045	-0.011	0.376	—
chr1_961186_C_T	chr1:961186	0.022	0.024	0.371	<0.001%
chr1_961245_G_A	chr1:961245	0.042	0.038	0.365	0.0059%
chr1_966371_T_A	chr1:966371	0.072	0.020	0.365	—
chr1_966381_A_T	chr1:966381	0.007	-0.063	0.365	—
chr1_960826_G_A	chr1:960826	0.091	0.027	0.359	0.023%
chr1_966382_G_A	chr1:966382	-0.200	-0.164	-0.071	—
chr1_959914_G_C	chr1:959914	0.052	0.008	0.347	0.0053%
chr1_961289_G_A	chr1:961289	0.029	0.022	0.347	<0.001%
chr1_960604_G_A	chr1:960604	0.167	0.022	0.346	0.0013%
chr1_961148_G_T	chr1:961148	0.095	0.025	0.344	0.0026%
chr1_961011_T_C	chr1:961011	-0.019	-0.021	-0.343	0.0013%
chr1_966238_G_T	chr1:966238	0.181	0.066	-0.341	—
chr1_966388_G_C	chr1:966388	0.155	0.056	0.341	—
chr1_961038_G_A	chr1:961038	0.064	0.024	0.338	0.0013%
chr1_961040_G_A	chr1:961040	0.044	0.022	0.338	<0.001%
chr1_961209_C_T	chr1:961209	0.013	0.022	0.335	<0.001%
chr1_961057_C_A	chr1:961057	-0.010	0.023	0.331	<0.001%
chr1_961023_G_A	chr1:961023	0.077	0.041	0.329	<0.001%
chr1_966381_A_G	chr1:966381	-0.012	-0.057	0.329	—
chr1_966383_G_C	chr1:966383	0.003	-0.085	0.329	0.0013%
chr1_966385_A_C	chr1:966385	0.150	0.010	0.329	—
chr1_966387_G_T	chr1:966387	0.133	0.110	0.329	—
chr1_961201_T_C	chr1:961201	0.000	-0.018	-0.324	<0.001%
chr1_966229_G_C	chr1:966229	0.183	0.079	0.188	<0.001%
chr1_960744_C_T	chr1:960744	0.045	0.028	0.322	0.0013%
chr1_960535_G_C	chr1:960535	-0.181	-0.021	0.063	0.0099%
chr1_961167_C_T	chr1:961167	0.015	0.023	0.318	0.0013%
chr1_966341_C_A	chr1:966341	-0.163	-0.047	-0.318	—
chr1_966366_A_T	chr1:966366	0.180	0.195	0.306	—
chr1_966378_C_G	chr1:966378	0.180	0.180	0.235	—
chr1_960970_C_T	chr1:960970	0.029	0.019	0.316	<0.001%
chr1_960526_G_A	chr1:960526	-0.178	-0.012	-0.113	<0.001%
chr1_960774_G_T	chr1:960774	0.064	0.016	0.313	<0.001%
chr1_961200_C_T	chr1:961200	0.017	0.028	0.312	0.0013%
chr1_966352_A_G	chr1:966352	-0.176	-0.066	-0.282	—
chr1_960714_C_T	chr1:960714	0.037	0.023	0.310	0.0020%
chr1_960740_A_G	chr1:960740	-0.092	-0.029	-0.306	<0.001%
chr1_961173_C_T	chr1:961173	0.016	0.027	0.306	<0.001%
chr1_966237_G_T	chr1:966237	0.143	0.067	-0.306	—
chr1_961168_G_T	chr1:961168	0.015	0.026	0.303	<0.001%
chr1_961261_G_T	chr1:961261	0.012	0.030	0.300	<0.001%
chr1_961134_G_A	chr1:961134	0.012	0.027	0.297	0.014%
chr1_961199_G_T	chr1:961199	0.010	0.026	0.294	0.0013%
chr1_961206_C_T	chr1:961206	0.011	0.017	0.294	<0.001%
chr1_961208_C_G	chr1:961208	-0.020	-0.026	-0.294	<0.001%
chr1_966238_G_C	chr1:966238	0.166	0.061	-0.129	—
chr1_966365_G_A	chr1:966365	0.140	0.117	0.294	—
chr1_966366_A_C	chr1:966366	0.146	0.094	0.294	—
chr1_961158_G_A	chr1:961158	0.019	0.018	0.288	<0.001%
chr1_961174_T_C	chr1:961174	-0.010	-0.021	-0.288	<0.001%
chr1_960675_C_T	chr1:960675	0.038	0.024	0.285	<0.001%
chr1_961184_C_T	chr1:961184	0.035	0.018	0.285	0.011%
chr1_960708_C_A	chr1:960708	-0.002	0.026	0.284	<0.001%
chr1_959902_C_T	chr1:959902	0.010	0.012	0.282	<0.001%
chr1_960851_C_G	chr1:960851	0.134	-0.002	0.282	<0.001%
chr1_960907_G_A	chr1:960907	0.053	0.025	0.282	0.0013%
chr1_961219_C_T	chr1:961219	-0.002	0.025	0.282	0.0013%
chr1_966278_T_C	chr1:966278	0.047	0.000	0.282	—
chr1_966356_C_T	chr1:966356	-0.121	-0.063	-0.282	<0.001%
chr1_960542_G_A	chr1:960542	0.099	0.047	0.279	0.011%
chr1_961112_A_G	chr1:961112	-0.012	-0.028	-0.279	<0.001%
chr1_961281_C_T	chr1:961281	0.021	0.029	0.279	<0.001%
chr1_960773_C_T	chr1:960773	0.054	0.014	0.278	<0.001%
chr1_961188_T_C	chr1:961188	-0.009	-0.018	-0.276	<0.001%
chr1_961198_G_A	chr1:961198	0.017	0.025	0.276	<0.001%
chr1_961318_C_T	chr1:961318	0.020	0.022	0.276	<0.001%
chr1_961286_C_A	chr1:961286	0.014	0.015	0.274	0.0046%
chr1_966391_C_G	chr1:966391	0.155	-0.030	0.141	—
chr1_960444_G_C	chr1:960444	0.071	0.045	0.271	<0.001%
chr1_961101_A_G	chr1:961101	-0.018	-0.017	-0.271	0.0013%
chr1_961212_G_A	chr1:961212	-0.001	0.019	0.271	0.0020%
chr1_966237_G_A	chr1:966237	0.115	0.063	-0.271	—
chr1_966239_A_T	chr1:966239	-0.007	-0.013	-0.271	—
chr1_966368_A_G	chr1:966368	-0.008	0.005	0.271	—
chr1_960905_G_T	chr1:960905	0.036	0.027	0.269	<0.001%
chr1_960509_A_T	chr1:960509	0.006	0.043	0.268	3.15%
chr1_960705_C_T	chr1:960705	0.062	0.024	0.268	<0.001%
chr1_960587_A_G	chr1:960587	-0.022	-0.024	-0.266	<0.001%
chr1_960961_C_T	chr1:960961	0.030	0.020	0.266	<0.001%
chr1_959900_G_A	chr1:959900	0.010	0.010	0.265	<0.001%
chr1_960533_G_A	chr1:960533	-0.150	-0.016	-0.054	0.0013%
chr1_961128_C_T	chr1:961128	0.022	0.021	0.265	<0.001%
chr1_961317_C_T	chr1:961317	0.002	0.017	0.265	0.0026%
chr1_966271_A_C	chr1:966271	0.150	0.030	0.071	—
chr1_960469_G_C	chr1:960469	0.082	-0.001	0.263	<0.001%
chr1_959888_C_T	chr1:959888	0.062	0.040	0.259	3.24%
chr1_960717_G_A	chr1:960717	-0.007	0.023	0.259	0.0020%
chr1_966224_T_C	chr1:966224	0.003	0.047	0.259	—
chr1_966232_G_T	chr1:966232	0.022	-0.025	0.259	—
chr1_966238_G_A	chr1:966238	0.110	0.058	-0.259	—
chr1_966345_C_T	chr1:966345	-0.055	-0.048	-0.259	0.090%
chr1_966377_G_T	chr1:966377	-0.111	-0.051	-0.259	—
chr1_960849_G_T	chr1:960849	0.000	0.016	0.258	0.0027%
chr1_960450_G_A	chr1:960450	0.099	0.037	0.256	0.066%
chr1_961146_G_A	chr1:961146	0.061	0.030	0.256	0.0013%
chr1_961152_T_G	chr1:961152	-0.006	-0.016	-0.256	0.0013%
chr1_961256_C_T	chr1:961256	0.022	0.027	0.256	<0.001%
chr1_960902_C_A	chr1:960902	0.001	0.018	0.254	<0.001%
chr1_960440_G_C	chr1:960440	0.082	0.024	0.253	5.07%
chr1_961294_C_T	chr1:961294	0.049	0.035	0.250	0.0013%
chr1_961048_G_C	chr1:961048	0.007	-0.013	-0.249	0.0013%
chr1_961063_G_T	chr1:961063	0.008	0.023	0.247	0.110%
chr1_966228_G_T	chr1:966228	0.140	0.061	-0.153	—
chr1_966230_G_T	chr1:966230	-0.035	-0.053	0.247	—
chr1_966276_G_C	chr1:966276	-0.083	-0.127	0.247	—
chr1_966278_T_G	chr1:966278	0.015	-0.008	0.247	—
chr1_966363_C_G	chr1:966363	-0.083	-0.056	-0.247	—
chr1_966382_G_T	chr1:966382	-0.060	-0.108	0.247	—
chr1_966383_G_T	chr1:966383	-0.015	-0.099	0.247	—
chr1_960603_C_T	chr1:960603	-0.139	0.004	-0.016	0.0033%
chr1_960646_G_T	chr1:960646	0.037	0.024	0.246	0.0026%
chr1_960609_G_C	chr1:960609	-0.138	-0.000	-0.093	<0.001%
chr1_960734_G_T	chr1:960734	0.034	0.016	0.244	0.0027%
chr1_961096_A_C	chr1:961096	-0.010	-0.018	-0.244	<0.001%
chr1_966229_G_T	chr1:966229	0.138	0.066	0.012	—
chr1_961309_A_T	chr1:961309	0.003	0.004	-0.241	<0.001%
chr1_960583_C_G	chr1:960583	0.000	-0.015	-0.238	<0.001%
chr1_960612_A_G	chr1:960612	0.022	-0.019	-0.238	0.0013%
chr1_960899_G_A	chr1:960899	0.049	0.023	0.238	<0.001%
chr1_961066_G_A	chr1:961066	0.038	0.012	0.238	0.0033%
chr1_966390_C_T	chr1:966390	0.135	0.147	0.024	—
chr1_960776_C_T	chr1:960776	0.047	0.015	0.235	0.0013%
chr1_961065_G_T	chr1:961065	0.027	0.014	0.235	<0.001%
chr1_961144_G_A	chr1:961144	0.017	0.031	0.235	0.0033%
chr1_961213_G_A	chr1:961213	-0.004	0.014	0.235	0.0020%
chr1_961337_C_T	chr1:961337	0.023	0.013	0.235	0.0020%
chr1_966384_T_G	chr1:966384	0.007	-0.122	0.235	—
chr1_960684_C_T	chr1:960684	0.017	0.020	0.234	<0.001%
chr1_960503_G_A	chr1:960503	-0.131	-0.022	-0.050	<0.001%
chr1_960883_G_A	chr1:960883	-0.013	0.032	0.232	0.0013%
chr1_966236_T_C	chr1:966236	0.131	0.063	-0.118	—
chr1_961129_G_A	chr1:961129	0.002	0.016	0.229	0.0013%
chr1_961138_C_T	chr1:961138	0.002	0.014	0.229	0.017%
chr1_961026_G_A	chr1:961026	0.038	0.027	0.228	<0.001%
chr1_960990_C_T	chr1:960990	0.015	0.016	0.224	0.0033%
chr1_959758_C_T	chr1:959758	0.013	0.009	0.224	<0.001%
chr1_961114_C_T	chr1:961114	0.001	0.018	0.224	0.0046%
chr1_966245_G_C	chr1:966245	-0.048	-0.041	-0.224	—
chr1_966336_C_A	chr1:966336	-0.057	-0.020	-0.224	—
chr1_966372_G_T	chr1:966372	0.002	0.018	0.224	—
chr1_966378_C_T	chr1:966378	0.126	0.102	0.165	<0.001%
chr1_966380_C_A	chr1:966380	0.025	0.000	0.224	—
chr1_960746_G_A	chr1:960746	0.000	0.017	0.222	0.0013%
chr1_960793_C_A	chr1:960793	0.027	0.021	0.222	<0.001%
chr1_961260_C_T	chr1:961260	-0.019	0.019	0.221	0.0026%
chr1_961095_C_T	chr1:961095	0.007	0.012	0.218	<0.001%
chr1_961280_C_T	chr1:961280	0.017	0.035	0.218	<0.001%
chr1_961355_T_G	chr1:961355	0.007	-0.015	-0.218	<0.001%
chr1_960715_C_A	chr1:960715	-0.031	0.013	0.216	<0.001%
chr1_960884_G_A	chr1:960884	-0.027	0.035	0.216	<0.001%
chr1_966228_G_A	chr1:966228	0.121	0.056	-0.165	0.0020%
chr1_966354_G_C	chr1:966354	0.121	0.063	0.212	—

Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.