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LOC105378948
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near LOC105378948
chr1:965,634..1,169,337, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr1_966498_G_T | chr1:966498 | 0.855 | 0.623 | 1.000 | — |
| chr1_966403_A_G | chr1:966403 | 0.191 | 0.348 | 0.965 | <0.001% |
| chr1_966415_C_T | chr1:966415 | -0.408 | -0.178 | -0.894 | <0.001% |
| chr1_966454_G_C | chr1:966454 | -0.489 | -0.279 | -0.682 | — |
| chr1_966368_A_T | chr1:966368 | 0.314 | 0.218 | 0.847 | — |
| chr1_966410_C_G | chr1:966410 | -0.474 | -0.183 | -0.741 | — |
| chr1_966442_G_T | chr1:966442 | 0.203 | 0.211 | 0.835 | — |
| chr1_966486_G_T | chr1:966486 | -0.215 | -0.117 | -0.776 | — |
| chr1_966414_A_C | chr1:966414 | -0.409 | -0.117 | -0.565 | — |
| chr1_966459_G_C | chr1:966459 | -0.409 | -0.170 | -0.706 | — |
| chr1_966413_C_G | chr1:966413 | -0.406 | -0.218 | -0.600 | — |
| chr1_966440_C_G | chr1:966440 | -0.381 | -0.157 | -0.694 | — |
| chr1_966412_C_G | chr1:966412 | -0.378 | -0.162 | -0.529 | <0.001% |
| chr1_966412_C_T | chr1:966412 | -0.378 | -0.147 | -0.494 | — |
| chr1_966446_G_T | chr1:966446 | 0.359 | 0.228 | 0.565 | — |
| chr1_966476_G_T | chr1:966476 | -0.268 | -0.221 | -0.624 | — |
| chr1_966393_G_C | chr1:966393 | 0.349 | -0.010 | 0.094 | — |
| chr1_966473_G_T | chr1:966473 | -0.218 | -0.161 | -0.612 | — |
| chr1_966416_C_G | chr1:966416 | -0.341 | -0.099 | -0.271 | — |
| chr1_966231_G_C | chr1:966231 | 0.131 | 0.051 | 0.600 | — |
| chr1_966396_C_A | chr1:966396 | -0.210 | -0.211 | -0.600 | <0.001% |
| chr1_966426_G_A | chr1:966426 | -0.319 | -0.173 | -0.600 | — |
| chr1_966413_C_T | chr1:966413 | -0.338 | -0.117 | -0.447 | — |
| chr1_966384_T_C | chr1:966384 | 0.060 | -0.030 | 0.588 | — |
| chr1_966410_C_T | chr1:966410 | -0.333 | -0.084 | -0.529 | — |
| chr1_966452_G_T | chr1:966452 | 0.258 | 0.203 | 0.588 | — |
| chr1_966410_C_A | chr1:966410 | -0.329 | -0.122 | -0.459 | — |
| chr1_966436_C_T | chr1:966436 | 0.328 | 0.086 | 0.482 | 0.0013% |
| chr1_966383_G_A | chr1:966383 | 0.323 | -0.169 | 0.471 | — |
| chr1_966415_C_G | chr1:966415 | -0.298 | -0.151 | -0.565 | — |
| chr1_966472_A_C | chr1:966472 | -0.118 | -0.138 | -0.565 | — |
| chr1_966474_G_T | chr1:966474 | -0.223 | -0.173 | -0.565 | — |
| chr1_966390_C_G | chr1:966390 | 0.314 | -0.006 | -0.176 | — |
| chr1_966230_G_C | chr1:966230 | 0.068 | -0.003 | 0.553 | — |
| chr1_966474_G_A | chr1:966474 | -0.221 | -0.155 | -0.553 | — |
| chr1_966474_G_C | chr1:966474 | -0.193 | -0.174 | -0.553 | — |
| chr1_966476_G_C | chr1:966476 | -0.235 | -0.208 | -0.553 | — |
| chr1_966516_C_G | chr1:966516 | 0.067 | 0.091 | 0.553 | — |
| chr1_966412_C_A | chr1:966412 | -0.311 | -0.122 | -0.412 | — |
| chr1_966436_C_A | chr1:966436 | 0.311 | 0.119 | 0.424 | — |
| chr1_966494_A_G | chr1:966494 | 0.309 | 0.208 | 0.424 | — |
| chr1_966415_C_A | chr1:966415 | -0.286 | -0.114 | -0.541 | — |
| chr1_966367_G_C | chr1:966367 | -0.097 | -0.065 | -0.529 | — |
| chr1_966416_C_A | chr1:966416 | -0.300 | -0.063 | -0.306 | — |
| chr1_966459_G_T | chr1:966459 | -0.296 | -0.146 | -0.471 | — |
| chr1_966403_A_T | chr1:966403 | 0.131 | 0.223 | 0.518 | — |
| chr1_966499_G_T | chr1:966499 | -0.067 | -0.009 | -0.518 | — |
| chr1_966413_C_A | chr1:966413 | -0.291 | -0.089 | -0.400 | — |
| chr1_966460_C_T | chr1:966460 | -0.291 | -0.211 | -0.388 | — |
| chr1_966417_C_A | chr1:966417 | -0.288 | -0.071 | -0.482 | — |
| chr1_966381_A_C | chr1:966381 | 0.185 | -0.010 | 0.506 | — |
| chr1_966463_G_A | chr1:966463 | 0.255 | 0.124 | 0.506 | — |
| chr1_966416_C_T | chr1:966416 | -0.283 | -0.038 | -0.235 | — |
| chr1_966231_G_A | chr1:966231 | 0.116 | 0.041 | 0.494 | — |
| chr1_966486_G_A | chr1:966486 | 0.205 | 0.129 | 0.494 | — |
| chr1_966411_T_A | chr1:966411 | -0.276 | -0.099 | -0.482 | — |
| chr1_966367_G_T | chr1:966367 | -0.130 | -0.056 | -0.482 | — |
| chr1_966371_T_G | chr1:966371 | 0.115 | 0.033 | 0.482 | — |
| chr1_966384_T_A | chr1:966384 | -0.018 | -0.058 | 0.482 | — |
| chr1_966434_G_A | chr1:966434 | -0.165 | -0.047 | -0.482 | — |
| chr1_966472_A_T | chr1:966472 | -0.158 | -0.114 | -0.482 | — |
| chr1_966460_C_G | chr1:966460 | -0.271 | -0.211 | -0.400 | — |
| chr1_966461_C_A | chr1:966461 | -0.271 | -0.194 | -0.235 | — |
| chr1_966466_C_G | chr1:966466 | 0.271 | 0.023 | 0.071 | — |
| chr1_966179_G_A | chr1:966179 | 0.098 | 0.034 | 0.471 | 71.7% |
| chr1_966430_T_A | chr1:966430 | -0.088 | -0.038 | -0.471 | — |
| chr1_966460_C_A | chr1:966460 | -0.266 | -0.193 | -0.400 | — |
| chr1_966382_G_C | chr1:966382 | -0.007 | -0.066 | 0.459 | — |
| chr1_966411_T_C | chr1:966411 | -0.203 | -0.091 | -0.459 | — |
| chr1_966480_G_T | chr1:966480 | 0.258 | 0.112 | 0.365 | — |
| chr1_966321_G_A | chr1:966321 | -0.082 | -0.066 | -0.447 | — |
| chr1_966498_G_C | chr1:966498 | 0.253 | 0.085 | 0.176 | — |
| chr1_966461_C_G | chr1:966461 | -0.250 | -0.160 | -0.176 | — |
| chr1_966499_G_A | chr1:966499 | 0.233 | 0.138 | 0.435 | — |
| chr1_966501_C_G | chr1:966501 | 0.203 | 0.094 | 0.435 | 0.0013% |
| chr1_966230_G_A | chr1:966230 | 0.088 | 0.030 | 0.424 | — |
| chr1_966385_A_G | chr1:966385 | -0.215 | -0.127 | -0.424 | <0.001% |
| chr1_966462_T_G | chr1:966462 | -0.226 | -0.237 | -0.424 | — |
| chr1_966502_C_G | chr1:966502 | 0.193 | 0.107 | 0.424 | — |
| chr1_966513_G_C | chr1:966513 | -0.106 | -0.077 | -0.424 | — |
| chr1_966417_C_G | chr1:966417 | -0.236 | -0.046 | -0.341 | — |
| chr1_966480_G_C | chr1:966480 | 0.235 | 0.015 | 0.282 | — |
| chr1_966281_G_C | chr1:966281 | 0.233 | 0.074 | 0.165 | — |
| chr1_966419_C_G | chr1:966419 | -0.226 | -0.081 | -0.412 | — |
| chr1_966459_G_A | chr1:966459 | -0.171 | -0.114 | -0.412 | 0.0020% |
| chr1_966476_G_A | chr1:966476 | -0.226 | -0.157 | -0.412 | 0.0059% |
| chr1_966501_C_A | chr1:966501 | 0.213 | 0.104 | 0.412 | — |
| chr1_966502_C_A | chr1:966502 | 0.166 | 0.094 | 0.412 | — |
| chr1_966418_T_G | chr1:966418 | -0.231 | -0.117 | -0.376 | — |
| chr1_966409_G_C | chr1:966409 | -0.228 | -0.126 | -0.271 | — |
| chr1_966231_G_T | chr1:966231 | 0.105 | 0.038 | 0.400 | — |
| chr1_966395_C_T | chr1:966395 | -0.098 | -0.067 | -0.400 | — |
| chr1_966405_A_G | chr1:966405 | 0.193 | 0.041 | 0.400 | — |
| chr1_966419_C_A | chr1:966419 | -0.181 | -0.102 | -0.400 | — |
| chr1_966420_G_C | chr1:966420 | -0.118 | -0.107 | -0.400 | — |
| chr1_966435_C_A | chr1:966435 | 0.183 | 0.151 | 0.400 | — |
| chr1_966445_C_G | chr1:966445 | -0.226 | -0.146 | -0.306 | — |
| chr1_966449_C_A | chr1:966449 | 0.033 | 0.126 | 0.400 | — |
| chr1_966461_C_T | chr1:966461 | -0.226 | -0.161 | -0.247 | — |
| chr1_966475_C_G | chr1:966475 | -0.215 | -0.025 | -0.400 | — |
| chr1_966419_C_T | chr1:966419 | -0.183 | -0.066 | -0.388 | 0.017% |
| chr1_966445_C_T | chr1:966445 | -0.203 | -0.119 | -0.388 | — |
| chr1_966463_G_C | chr1:966463 | 0.195 | 0.112 | 0.388 | — |
| chr1_966442_G_A | chr1:966442 | -0.216 | -0.140 | -0.271 | — |
| chr1_966232_G_A | chr1:966232 | 0.057 | -0.003 | 0.376 | 0.0026% |
| chr1_966232_G_C | chr1:966232 | 0.045 | -0.011 | 0.376 | — |
| chr1_966438_G_C | chr1:966438 | -0.213 | -0.135 | -0.200 | 0.0013% |
| chr1_966458_C_T | chr1:966458 | -0.213 | -0.127 | -0.341 | 0.0026% |
| chr1_966516_C_A | chr1:966516 | 0.003 | -0.030 | 0.376 | — |
| chr1_966458_C_A | chr1:966458 | -0.211 | -0.127 | -0.341 | — |
| chr1_966480_G_A | chr1:966480 | 0.211 | 0.084 | 0.341 | 0.0013% |
| chr1_966406_A_T | chr1:966406 | 0.210 | 0.107 | 0.271 | — |
| chr1_966438_G_T | chr1:966438 | -0.208 | -0.079 | -0.118 | <0.001% |
| chr1_966454_G_T | chr1:966454 | -0.208 | -0.107 | -0.224 | — |
| chr1_966371_T_A | chr1:966371 | 0.072 | 0.020 | 0.365 | — |
| chr1_966381_A_T | chr1:966381 | 0.007 | -0.063 | 0.365 | — |
| chr1_966402_C_A | chr1:966402 | -0.101 | -0.066 | -0.365 | — |
| chr1_966411_T_G | chr1:966411 | -0.155 | -0.109 | -0.365 | — |
| chr1_966455_C_A | chr1:966455 | -0.188 | -0.072 | -0.365 | — |
| chr1_966463_G_T | chr1:966463 | 0.168 | 0.096 | 0.365 | — |
| chr1_966485_A_G | chr1:966485 | -0.163 | -0.085 | -0.365 | — |
| chr1_966488_C_A | chr1:966488 | -0.110 | -0.046 | -0.365 | — |
| chr1_966444_A_T | chr1:966444 | -0.205 | -0.135 | -0.318 | — |
| chr1_966414_A_G | chr1:966414 | 0.201 | 0.058 | 0.294 | — |
| chr1_966382_G_A | chr1:966382 | -0.200 | -0.164 | -0.071 | — |
| chr1_966458_C_G | chr1:966458 | -0.163 | -0.140 | -0.353 | — |
| chr1_966471_G_T | chr1:966471 | 0.092 | 0.072 | 0.353 | — |
| chr1_966504_A_C | chr1:966504 | -0.198 | -0.108 | -0.353 | — |
| chr1_966442_G_C | chr1:966442 | -0.198 | -0.122 | -0.153 | — |
| chr1_966238_G_T | chr1:966238 | 0.181 | 0.066 | -0.341 | — |
| chr1_966388_G_C | chr1:966388 | 0.155 | 0.056 | 0.341 | — |
| chr1_966452_G_A | chr1:966452 | 0.191 | 0.114 | 0.318 | — |
| chr1_966440_C_T | chr1:966440 | -0.190 | -0.046 | -0.282 | 0.014% |
| chr1_966381_A_G | chr1:966381 | -0.012 | -0.057 | 0.329 | — |
| chr1_966383_G_C | chr1:966383 | 0.003 | -0.085 | 0.329 | 0.0013% |
| chr1_966385_A_C | chr1:966385 | 0.150 | 0.010 | 0.329 | — |
| chr1_966387_G_T | chr1:966387 | 0.133 | 0.110 | 0.329 | — |
| chr1_966434_G_T | chr1:966434 | 0.055 | 0.109 | 0.329 | — |
| chr1_966516_C_T | chr1:966516 | 0.027 | -0.013 | 0.329 | — |
| chr1_966229_G_C | chr1:966229 | 0.183 | 0.079 | 0.188 | <0.001% |
| chr1_966341_C_A | chr1:966341 | -0.163 | -0.047 | -0.318 | — |
| chr1_966366_A_T | chr1:966366 | 0.180 | 0.195 | 0.306 | — |
| chr1_966378_C_G | chr1:966378 | 0.180 | 0.180 | 0.235 | — |
| chr1_966431_G_C | chr1:966431 | 0.023 | -0.113 | 0.318 | — |
| chr1_966352_A_G | chr1:966352 | -0.176 | -0.066 | -0.282 | — |
| chr1_966237_G_T | chr1:966237 | 0.143 | 0.067 | -0.306 | — |
| chr1_966434_G_C | chr1:966434 | -0.146 | -0.103 | -0.306 | — |
| chr1_966470_G_T | chr1:966470 | -0.173 | -0.093 | -0.188 | — |
| chr1_966477_G_A | chr1:966477 | -0.153 | -0.119 | -0.306 | — |
| chr1_966497_G_T | chr1:966497 | 0.120 | 0.123 | 0.306 | — |
| chr1_966490_G_T | chr1:966490 | 0.170 | 0.109 | 0.106 | — |
| chr1_966238_G_C | chr1:966238 | 0.166 | 0.061 | -0.129 | — |
| chr1_966365_G_A | chr1:966365 | 0.140 | 0.117 | 0.294 | — |
| chr1_966366_A_C | chr1:966366 | 0.146 | 0.094 | 0.294 | — |
| chr1_966475_C_A | chr1:966475 | -0.141 | -0.074 | -0.294 | — |
| chr1_966475_C_T | chr1:966475 | -0.105 | -0.069 | -0.294 | 0.0059% |
| chr1_966478_G_C | chr1:966478 | -0.110 | -0.150 | -0.294 | — |
| chr1_966502_C_T | chr1:966502 | 0.163 | 0.043 | 0.294 | <0.001% |
| chr1_966535_G_C | chr1:966535 | 0.166 | 0.084 | 0.106 | — |
| chr1_966278_T_C | chr1:966278 | 0.047 | 0.000 | 0.282 | — |
| chr1_966356_C_T | chr1:966356 | -0.121 | -0.063 | -0.282 | <0.001% |
| chr1_966395_C_A | chr1:966395 | -0.083 | -0.075 | -0.282 | — |
| chr1_966454_G_A | chr1:966454 | -0.160 | -0.020 | -0.106 | — |
| chr1_966436_C_G | chr1:966436 | 0.158 | 0.036 | 0.165 | — |
| chr1_966462_T_A | chr1:966462 | -0.158 | -0.129 | -0.235 | — |
| chr1_966391_C_G | chr1:966391 | 0.155 | -0.030 | 0.141 | — |
| chr1_966237_G_A | chr1:966237 | 0.115 | 0.063 | -0.271 | — |
| chr1_966239_A_T | chr1:966239 | -0.007 | -0.013 | -0.271 | — |
| chr1_966368_A_G | chr1:966368 | -0.008 | 0.005 | 0.271 | — |
| chr1_966396_C_G | chr1:966396 | -0.085 | -0.107 | -0.271 | — |
| chr1_966402_C_T | chr1:966402 | -0.070 | -0.025 | -0.271 | — |
| chr1_966447_T_C | chr1:966447 | -0.126 | -0.069 | -0.271 | — |
| chr1_966456_C_T | chr1:966456 | 0.072 | 0.071 | 0.271 | 0.023% |
| chr1_966512_C_A | chr1:966512 | -0.097 | -0.074 | -0.271 | — |
| chr1_966477_G_T | chr1:966477 | -0.151 | -0.074 | -0.259 | — |
| chr1_966271_A_C | chr1:966271 | 0.150 | 0.030 | 0.071 | — |
| chr1_966443_G_C | chr1:966443 | -0.150 | -0.066 | -0.129 | — |
| chr1_966224_T_C | chr1:966224 | 0.003 | 0.047 | 0.259 | — |
| chr1_966232_G_T | chr1:966232 | 0.022 | -0.025 | 0.259 | — |
| chr1_966238_G_A | chr1:966238 | 0.110 | 0.058 | -0.259 | — |
| chr1_966345_C_T | chr1:966345 | -0.055 | -0.048 | -0.259 | 0.090% |
| chr1_966377_G_T | chr1:966377 | -0.111 | -0.051 | -0.259 | — |
| chr1_966409_G_A | chr1:966409 | -0.090 | -0.066 | -0.259 | — |
| chr1_966430_T_G | chr1:966430 | -0.088 | -0.086 | -0.259 | — |
| chr1_966432_G_A | chr1:966432 | -0.073 | -0.071 | -0.259 | — |
| chr1_966468_C_G | chr1:966468 | -0.128 | -0.048 | -0.259 | — |
| chr1_966479_G_A | chr1:966479 | 0.080 | 0.003 | 0.259 | 0.0026% |
| chr1_966437_G_C | chr1:966437 | -0.143 | -0.009 | -0.106 | — |
| chr1_966522_G_C | chr1:966522 | -0.143 | -0.062 | -0.212 | — |
| chr1_966228_G_T | chr1:966228 | 0.140 | 0.061 | -0.153 | — |
| chr1_966230_G_T | chr1:966230 | -0.035 | -0.053 | 0.247 | — |
| chr1_966276_G_C | chr1:966276 | -0.083 | -0.127 | 0.247 | — |
| chr1_966278_T_G | chr1:966278 | 0.015 | -0.008 | 0.247 | — |
| chr1_966363_C_G | chr1:966363 | -0.083 | -0.056 | -0.247 | — |
| chr1_966382_G_T | chr1:966382 | -0.060 | -0.108 | 0.247 | — |
| chr1_966383_G_T | chr1:966383 | -0.015 | -0.099 | 0.247 | — |
| chr1_966395_C_G | chr1:966395 | -0.053 | -0.065 | -0.247 | — |
| chr1_966403_A_C | chr1:966403 | 0.055 | 0.069 | 0.247 | — |
| chr1_966405_A_T | chr1:966405 | 0.140 | 0.058 | 0.247 | — |
| chr1_966477_G_C | chr1:966477 | -0.110 | -0.128 | -0.247 | — |
Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.