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LOC107985728

This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.

Scored variants near LOC107985728

chr1:820,242..1,025,604, gene body plus 100 kb. Showing the strongest 200 by effect size.

Variant	Position	PXR	FXR	AhR	AF
chr1_827416_G_A	chr1:827416	0.889	0.807	1.000	0.0039%
chr1_869922_C_T	chr1:869922	-0.950	-0.329	-1.000	0.0020%
chr1_826949_T_G	chr1:826949	0.831	0.345	1.000	<0.001%
chr1_827518_G_C	chr1:827518	-0.062	-0.426	-1.000	0.0033%
chr1_827624_G_A	chr1:827624	0.311	0.438	1.000	<0.001%
chr1_827623_G_C	chr1:827623	0.231	0.384	1.000	<0.001%
chr1_827589_G_C	chr1:827589	0.372	0.400	1.000	0.034%
chr1_870017_C_T	chr1:870017	0.588	0.258	0.782	<0.001%
chr1_827627_G_C	chr1:827627	0.156	0.372	1.000	0.0033%
chr1_827587_G_A	chr1:827587	0.303	0.352	1.000	0.0014%
chr1_827606_G_A	chr1:827606	-0.122	0.600	1.000	0.0026%
chr1_827190_A_G	chr1:827190	0.096	0.104	0.976	<0.001%
chr1_827589_G_T	chr1:827589	0.330	0.352	0.968	<0.001%
chr1_827711_G_A	chr1:827711	0.145	0.246	0.956	2.03%
chr1_858906_A_G	chr1:858906	-0.512	-0.114	-0.591	0.0020%
chr1_827590_G_T	chr1:827590	0.328	0.415	0.900	<0.001%
chr1_827723_A_C	chr1:827723	0.200	0.206	0.844	0.0013%
chr1_858756_G_C	chr1:858756	0.350	0.327	0.841	0.013%
chr1_869776_C_G	chr1:869776	0.275	0.128	0.809	<0.001%
chr1_827519_G_T	chr1:827519	0.072	-0.128	-0.806	<0.001%
chr1_827536_G_A	chr1:827536	-0.020	0.084	0.806	<0.001%
chr1_827606_G_C	chr1:827606	-0.452	0.400	0.476	<0.001%
chr1_827838_G_T	chr1:827838	0.032	0.151	0.797	<0.001%
chr1_870113_G_A	chr1:870113	0.338	0.501	0.785	<0.001%
chr1_870019_C_A	chr1:870019	0.440	0.237	0.688	<0.001%
chr1_827408_G_C	chr1:827408	0.438	0.195	0.435	<0.001%
chr1_869777_C_A	chr1:869777	0.191	0.107	0.753	<0.001%
chr1_858817_G_A	chr1:858817	-0.413	-0.332	-0.741	<0.001%
chr1_827697_C_T	chr1:827697	0.194	0.181	0.716	0.0026%
chr1_827493_C_G	chr1:827493	-0.403	-0.358	-0.635	0.021%
chr1_870069_C_A	chr1:870069	0.239	0.212	0.712	<0.001%
chr1_827361_C_T	chr1:827361	-0.200	-0.122	-0.706	0.011%
chr1_827559_T_C	chr1:827559	-0.121	-0.102	-0.700	0.0029%
chr1_858860_G_A	chr1:858860	-0.334	-0.322	-0.685	<0.001%
chr1_870020_C_G	chr1:870020	0.388	0.179	0.447	0.0026%
chr1_827337_T_G	chr1:827337	-0.111	-0.231	-0.682	<0.001%
chr1_858120_G_C	chr1:858120	0.346	0.348	0.676	<0.001%
chr1_827411_C_G	chr1:827411	0.381	0.142	0.400	<0.001%
chr1_827698_G_A	chr1:827698	0.001	0.055	0.656	<0.001%
chr1_827339_C_T	chr1:827339	-0.080	-0.206	-0.647	0.0013%
chr1_827583_A_T	chr1:827583	0.049	0.133	0.647	<0.001%
chr1_827443_T_C	chr1:827443	0.121	0.046	0.635	0.0059%
chr1_858753_C_T	chr1:858753	0.110	0.279	0.629	0.0020%
chr1_869895_C_A	chr1:869895	-0.354	0.145	-0.441	<0.001%
chr1_827646_G_C	chr1:827646	-0.210	-0.072	-0.622	0.0013%
chr1_869774_C_A	chr1:869774	0.223	0.103	0.618	<0.001%
chr1_827788_T_G	chr1:827788	0.136	0.072	0.612	0.0013%
chr1_827478_A_C	chr1:827478	-0.341	-0.409	-0.059	0.0013%
chr1_869777_C_T	chr1:869777	0.166	0.112	0.600	<0.001%
chr1_869958_C_G	chr1:869958	-0.324	-0.014	-0.294	0.0085%
chr1_827496_T_C	chr1:827496	-0.319	-0.340	-0.400	0.014%
chr1_827602_C_G	chr1:827602	-0.122	-0.235	-0.550	0.0069%
chr1_858665_C_A	chr1:858665	-0.240	-0.188	-0.547	<0.001%
chr1_827492_A_G	chr1:827492	-0.305	-0.292	-0.259	<0.001%
chr1_827678_T_G	chr1:827678	-0.236	-0.119	-0.538	0.0013%
chr1_858901_T_C	chr1:858901	0.248	0.289	0.538	<0.001%
chr1_827470_C_G	chr1:827470	0.301	0.173	0.247	<0.001%
chr1_827295_C_T	chr1:827295	0.059	0.132	0.529	<0.001%
chr1_827475_G_A	chr1:827475	-0.285	-0.228	-0.529	0.037%
chr1_827553_C_G	chr1:827553	0.025	-0.133	-0.526	<0.001%
chr1_858837_G_A	chr1:858837	-0.276	-0.173	-0.521	<0.001%
chr1_869757_C_G	chr1:869757	0.141	0.104	0.518	<0.001%
chr1_827598_G_C	chr1:827598	0.212	0.228	0.509	<0.001%
chr1_827502_C_G	chr1:827502	-0.274	-0.147	-0.506	0.0013%
chr1_858881_A_G	chr1:858881	0.260	0.173	0.494	0.0026%
chr1_858931_G_A	chr1:858931	0.280	0.241	0.279	<0.001%
chr1_827490_G_T	chr1:827490	0.279	0.437	0.282	<0.001%
chr1_827661_G_T	chr1:827661	0.122	0.098	0.493	<0.001%
chr1_827671_C_T	chr1:827671	0.146	0.100	0.491	0.0013%
chr1_827473_A_T	chr1:827473	-0.275	-0.197	-0.388	<0.001%
chr1_827534_T_G	chr1:827534	-0.137	-0.088	-0.482	0.0027%
chr1_827476_G_A	chr1:827476	-0.270	-0.203	-0.471	1.47%
chr1_869793_C_G	chr1:869793	0.135	0.085	0.476	0.0066%
chr1_870150_A_G	chr1:870150	-0.158	-0.085	-0.476	0.033%
chr1_858855_T_C	chr1:858855	-0.269	-0.211	-0.406	0.018%
chr1_827506_T_G	chr1:827506	-0.266	-0.179	-0.188	2.52%
chr1_869933_G_A	chr1:869933	-0.265	-0.052	-0.047	<0.001%
chr1_869967_T_C	chr1:869967	0.150	0.171	0.453	<0.001%
chr1_869983_C_A	chr1:869983	0.162	-0.038	0.453	<0.001%
chr1_870051_G_A	chr1:870051	0.146	0.109	0.453	0.0020%
chr1_869855_A_G	chr1:869855	0.255	0.052	0.359	<0.001%
chr1_827364_C_T	chr1:827364	0.106	0.140	0.447	0.0072%
chr1_827536_G_C	chr1:827536	0.252	0.060	0.300	<0.001%
chr1_826783_C_T	chr1:826783	-0.168	-0.150	-0.441	<0.001%
chr1_858441_C_G	chr1:858441	0.175	0.239	0.441	<0.001%
chr1_858809_G_A	chr1:858809	-0.247	-0.256	-0.415	<0.001%
chr1_827252_T_A	chr1:827252	0.044	0.081	0.435	74.9%
chr1_858807_G_A	chr1:858807	-0.238	0.008	-0.424	0.016%
chr1_858930_C_T	chr1:858930	-0.235	-0.102	-0.312	0.0020%
chr1_827612_T_G	chr1:827612	-0.118	-0.063	-0.415	0.0014%
chr1_870057_G_T	chr1:870057	0.027	0.052	0.412	<0.001%
chr1_827456_T_G	chr1:827456	0.228	0.066	0.012	<0.001%
chr1_858851_G_A	chr1:858851	-0.180	-0.145	-0.397	0.0020%
chr1_827448_G_A	chr1:827448	0.224	0.028	0.235	0.014%
chr1_827568_G_A	chr1:827568	0.162	0.187	0.394	<0.001%
chr1_827477_C_A	chr1:827477	-0.220	-0.288	-0.376	0.0020%
chr1_827362_G_C	chr1:827362	0.186	0.340	0.388	<0.001%
chr1_827418_G_A	chr1:827418	0.067	0.063	0.388	<0.001%
chr1_827567_G_T	chr1:827567	0.176	0.161	0.388	0.358%
chr1_827670_C_G	chr1:827670	-0.096	-0.059	-0.388	0.0013%
chr1_870013_A_G	chr1:870013	-0.219	-0.135	-0.388	0.041%
chr1_827710_C_G	chr1:827710	-0.218	-0.146	-0.356	<0.001%
chr1_827599_G_A	chr1:827599	0.144	0.160	0.385	<0.001%
chr1_827880_G_A	chr1:827880	0.063	0.072	0.375	<0.001%
chr1_827506_T_A	chr1:827506	-0.211	-0.143	0.094	<0.001%
chr1_858803_C_T	chr1:858803	-0.210	-0.053	-0.271	0.0013%
chr1_827423_G_A	chr1:827423	-0.146	-0.129	-0.365	<0.001%
chr1_827504_G_C	chr1:827504	-0.206	-0.168	-0.176	<0.001%
chr1_827539_C_T	chr1:827539	0.086	0.019	0.365	<0.001%
chr1_827569_G_A	chr1:827569	0.104	0.108	0.365	<0.001%
chr1_870058_G_A	chr1:870058	0.011	0.061	0.365	0.0013%
chr1_827405_G_A	chr1:827405	0.205	0.124	0.200	0.0013%
chr1_827504_G_A	chr1:827504	-0.205	-0.173	-0.259	<0.001%
chr1_827660_C_T	chr1:827660	-0.010	0.029	0.359	0.0020%
chr1_858426_T_G	chr1:858426	0.203	0.363	0.165	0.0014%
chr1_870067_C_T	chr1:870067	0.053	0.069	0.359	0.028%
chr1_858843_G_C	chr1:858843	0.201	0.112	0.250	<0.001%
chr1_870002_C_G	chr1:870002	-0.201	0.028	-0.312	<0.001%
chr1_827257_G_T	chr1:827257	0.040	0.005	0.353	0.189%
chr1_827840_A_G	chr1:827840	-0.067	-0.048	-0.353	<0.001%
chr1_861161_A_T	chr1:861161	0.121	0.180	0.353	<0.001%
chr1_828109_G_C	chr1:828109	0.042	0.066	0.341	0.0014%
chr1_858497_G_A	chr1:858497	-0.170	-0.096	-0.341	0.0013%
chr1_858745_G_A	chr1:858745	-0.193	-0.145	-0.306	<0.001%
chr1_869793_C_T	chr1:869793	0.116	0.066	0.341	<0.001%
chr1_870022_A_G	chr1:870022	0.029	-0.072	-0.335	<0.001%
chr1_827637_C_T	chr1:827637	0.189	0.232	0.165	<0.001%
chr1_827661_G_C	chr1:827661	0.125	0.076	0.334	<0.001%
chr1_827675_C_A	chr1:827675	-0.047	-0.070	-0.332	0.0013%
chr1_827166_T_C	chr1:827166	0.050	0.023	0.329	0.0013%
chr1_827463_C_T	chr1:827463	-0.151	-0.147	-0.329	0.396%
chr1_826927_G_A	chr1:826927	0.131	0.008	0.324	0.471%
chr1_827643_C_G	chr1:827643	-0.183	-0.125	-0.300	<0.001%
chr1_858760_A_T	chr1:858760	0.181	0.096	0.194	<0.001%
chr1_827512_G_C	chr1:827512	0.151	0.114	-0.318	<0.001%
chr1_869835_G_C	chr1:869835	-0.052	-0.024	-0.318	0.0020%
chr1_904121_C_G	chr1:904121	-0.040	-0.052	-0.318	<0.001%
chr1_870119_G_A	chr1:870119	0.051	0.195	0.315	0.0020%
chr1_869905_G_T	chr1:869905	0.083	0.030	0.312	0.0013%
chr1_869951_A_G	chr1:869951	-0.176	-0.055	-0.247	0.012%
chr1_858781_C_T	chr1:858781	-0.128	-0.109	-0.309	<0.001%
chr1_827065_A_G	chr1:827065	0.042	0.018	0.306	<0.001%
chr1_870042_C_A	chr1:870042	0.065	0.016	0.306	<0.001%
chr1_827656_C_T	chr1:827656	0.073	0.051	0.301	0.0020%
chr1_858792_G_A	chr1:858792	0.169	0.137	0.241	0.386%
chr1_858752_G_T	chr1:858752	-0.151	-0.128	-0.297	<0.001%
chr1_870089_G_C	chr1:870089	0.168	0.090	0.141	<0.001%
chr1_870110_G_A	chr1:870110	0.114	-0.001	0.297	0.0013%
chr1_827222_A_C	chr1:827222	0.056	0.053	0.294	0.0053%
chr1_827377_G_T	chr1:827377	0.141	0.109	0.294	<0.001%
chr1_827527_A_G	chr1:827527	0.166	0.109	0.200	<0.001%
chr1_827549_G_C	chr1:827549	0.067	0.131	0.294	0.0039%
chr1_827812_G_A	chr1:827812	0.069	0.060	0.294	<0.001%
chr1_827435_G_A	chr1:827435	-0.165	-0.102	-0.035	3.07%
chr1_827670_C_T	chr1:827670	-0.069	-0.039	-0.291	0.0059%
chr1_869931_G_A	chr1:869931	-0.165	-0.129	0.147	0.0020%
chr1_860995_T_G	chr1:860995	-0.029	-0.060	-0.285	0.0079%
chr1_870187_G_A	chr1:870187	0.061	0.065	0.285	0.0026%
chr1_827297_G_A	chr1:827297	-0.046	-0.102	-0.282	<0.001%
chr1_827826_G_A	chr1:827826	-0.061	-0.033	-0.282	0.0020%
chr1_858647_G_A	chr1:858647	0.126	0.109	0.282	0.542%
chr1_870104_C_T	chr1:870104	0.048	0.041	0.279	<0.001%
chr1_826950_G_T	chr1:826950	-0.047	-0.053	-0.276	4.37%
chr1_870044_C_T	chr1:870044	0.042	0.037	0.276	<0.001%
chr1_858812_C_T	chr1:858812	0.155	0.096	0.238	0.0013%
chr1_858876_A_G	chr1:858876	0.069	0.102	0.274	<0.001%
chr1_827000_C_A	chr1:827000	0.024	0.063	-0.271	<0.001%
chr1_827092_C_T	chr1:827092	-0.004	-0.038	-0.271	18.7%
chr1_827231_G_A	chr1:827231	-0.051	-0.018	-0.271	0.0013%
chr1_827426_C_T	chr1:827426	-0.136	-0.165	-0.271	0.0059%
chr1_827838_G_C	chr1:827838	0.046	0.037	0.269	<0.001%
chr1_828064_C_T	chr1:828064	0.020	0.052	0.269	<0.001%
chr1_827510_C_T	chr1:827510	-0.151	-0.137	-0.224	0.0020%
chr1_858141_T_G	chr1:858141	-0.097	-0.061	-0.265	0.575%
chr1_858514_C_T	chr1:858514	0.150	0.010	0.212	0.010%
chr1_870173_C_G	chr1:870173	0.131	0.023	0.262	<0.001%
chr1_827260_C_T	chr1:827260	-0.036	0.109	-0.259	0.0020%
chr1_827303_G_C	chr1:827303	0.140	0.000	0.259	0.0013%
chr1_827343_C_T	chr1:827343	0.010	0.117	0.259	<0.001%
chr1_869928_G_A	chr1:869928	0.007	0.060	0.259	<0.001%
chr1_870104_C_A	chr1:870104	0.039	0.022	0.259	<0.001%
chr1_827471_G_C	chr1:827471	0.143	0.117	0.106	0.0066%
chr1_827688_G_C	chr1:827688	0.065	0.027	0.253	0.186%
chr1_858763_G_A	chr1:858763	-0.141	-0.112	-0.253	<0.001%
chr1_858771_G_A	chr1:858771	-0.116	-0.020	-0.253	1.98%
chr1_861111_G_A	chr1:861111	0.070	-0.001	0.253	<0.001%
chr1_870022_A_C	chr1:870022	0.082	-0.030	-0.253	<0.001%
chr1_870055_G_A	chr1:870055	-0.058	0.038	0.253	<0.001%
chr1_827236_G_C	chr1:827236	0.072	0.081	0.247	0.0020%
chr1_827433_G_A	chr1:827433	-0.140	-0.094	-0.024	0.0013%
chr1_827438_G_C	chr1:827438	0.023	0.036	0.247	0.011%
chr1_827636_C_G	chr1:827636	-0.082	-0.080	-0.247	1.20%
chr1_858675_C_G	chr1:858675	0.138	0.091	0.182	<0.001%
chr1_858137_T_C	chr1:858137	-0.113	-0.081	-0.243	<0.001%
chr1_826832_C_G	chr1:826832	0.091	0.051	0.241	<0.001%
chr1_826886_C_A	chr1:826886	-0.047	-0.015	-0.241	<0.001%
chr1_827500_T_G	chr1:827500	-0.136	-0.096	-0.118	<0.001%
chr1_828080_C_T	chr1:828080	0.032	0.047	0.241	<0.001%
chr1_858791_C_G	chr1:858791	-0.136	-0.147	-0.212	<0.001%
chr1_827354_T_C	chr1:827354	-0.136	-0.084	-0.118	<0.001%

Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.