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LRRC56
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near LRRC56
chr11:437,526..654,912, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr11_448426_G_A | chr11:448426 | -1.000 | -0.513 | -1.000 | 0.0026% |
| chr11_448432_T_C | chr11:448432 | -1.000 | -0.426 | -0.624 | <0.001% |
| chr11_448424_G_C | chr11:448424 | -1.000 | -0.266 | -0.506 | <0.001% |
| chr11_442006_C_T | chr11:442006 | -0.396 | -0.385 | -1.000 | <0.001% |
| chr11_442007_C_T | chr11:442007 | -0.360 | -0.331 | -1.000 | 0.0085% |
| chr11_442007_C_A | chr11:442007 | -0.314 | -0.316 | -1.000 | <0.001% |
| chr11_441843_G_T | chr11:441843 | 0.110 | 0.227 | 1.000 | <0.001% |
| chr11_442025_C_T | chr11:442025 | -0.269 | -0.166 | -1.000 | 0.0033% |
| chr11_441997_A_G | chr11:441997 | 0.179 | -0.030 | 1.000 | <0.001% |
| chr11_448194_C_T | chr11:448194 | 0.539 | 0.551 | 1.000 | 0.0026% |
| chr11_448406_A_G | chr11:448406 | -0.636 | -0.223 | -0.212 | <0.001% |
| chr11_450352_C_G | chr11:450352 | 0.609 | 0.056 | -0.129 | 0.0020% |
| chr11_442023_C_T | chr11:442023 | -0.169 | -0.189 | -1.000 | <0.001% |
| chr11_445825_C_T | chr11:445825 | -0.488 | -0.759 | -1.000 | <0.001% |
| chr11_441802_C_G | chr11:441802 | 0.224 | 0.261 | 1.000 | <0.001% |
| chr11_441844_G_A | chr11:441844 | 0.113 | 0.189 | 1.000 | 0.0085% |
| chr11_448297_C_G | chr11:448297 | 0.576 | 0.292 | -0.024 | <0.001% |
| chr11_448240_G_A | chr11:448240 | -0.476 | -0.345 | -1.000 | 0.0013% |
| chr11_441848_G_C | chr11:441848 | 0.111 | 0.214 | 1.000 | 0.0059% |
| chr11_441987_G_A | chr11:441987 | 0.055 | -0.124 | -0.997 | 0.015% |
| chr11_448217_C_T | chr11:448217 | 0.110 | 0.216 | 0.976 | 0.045% |
| chr11_450351_C_T | chr11:450351 | 0.551 | 0.063 | 0.200 | 0.0026% |
| chr11_441841_G_A | chr11:441841 | 0.095 | 0.211 | 0.941 | 0.027% |
| chr11_441849_G_T | chr11:441849 | 0.086 | 0.201 | 0.894 | 0.0013% |
| chr11_441844_G_T | chr11:441844 | 0.093 | 0.155 | 0.865 | <0.001% |
| chr11_441999_C_A | chr11:441999 | 0.157 | 0.000 | 0.853 | <0.001% |
| chr11_442043_G_A | chr11:442043 | -0.178 | -0.032 | -0.824 | 0.0039% |
| chr11_450462_A_C | chr11:450462 | -0.018 | -0.096 | -0.824 | <0.001% |
| chr11_441857_G_A | chr11:441857 | 0.110 | 0.159 | 0.794 | 0.0013% |
| chr11_448197_T_C | chr11:448197 | -0.146 | -0.148 | -0.776 | 0.0020% |
| chr11_448434_C_T | chr11:448434 | -0.436 | -0.254 | -0.353 | <0.001% |
| chr11_445817_G_A | chr11:445817 | -0.374 | -0.558 | -0.765 | <0.001% |
| chr11_441833_G_A | chr11:441833 | 0.069 | 0.143 | 0.735 | 0.0013% |
| chr11_445937_A_G | chr11:445937 | 0.414 | 0.718 | 0.629 | 0.0013% |
| chr11_445854_T_C | chr11:445854 | 0.413 | 0.586 | 0.665 | <0.001% |
| chr11_448286_C_T | chr11:448286 | 0.406 | 0.084 | -0.094 | 0.0013% |
| chr11_441840_G_C | chr11:441840 | 0.115 | 0.152 | 0.706 | 0.0020% |
| chr11_450485_A_G | chr11:450485 | -0.121 | -0.115 | -0.694 | 1.23% |
| chr11_445896_T_A | chr11:445896 | -0.334 | -0.669 | -0.688 | <0.001% |
| chr11_448158_T_C | chr11:448158 | -0.251 | -0.173 | -0.682 | 0.0020% |
| chr11_448215_C_T | chr11:448215 | 0.339 | 0.254 | 0.682 | <0.001% |
| chr11_448218_C_T | chr11:448218 | 0.070 | 0.155 | 0.682 | 0.0013% |
| chr11_450332_C_T | chr11:450332 | 0.381 | 0.126 | 0.071 | <0.001% |
| chr11_441833_G_C | chr11:441833 | 0.084 | 0.128 | 0.665 | 0.0020% |
| chr11_448469_G_C | chr11:448469 | 0.080 | 0.122 | 0.659 | <0.001% |
| chr11_442078_G_A | chr11:442078 | -0.119 | -0.030 | -0.652 | 0.079% |
| chr11_448213_C_G | chr11:448213 | 0.166 | 0.175 | 0.647 | <0.001% |
| chr11_450539_G_T | chr11:450539 | -0.005 | 0.077 | 0.647 | 0.0013% |
| chr11_445939_C_A | chr11:445939 | 0.364 | 0.582 | 0.412 | 0.0013% |
| chr11_450348_C_T | chr11:450348 | 0.364 | 0.291 | 0.271 | 0.0085% |
| chr11_442019_G_A | chr11:442019 | -0.094 | -0.048 | -0.637 | <0.001% |
| chr11_448625_A_C | chr11:448625 | 0.356 | 0.147 | 0.306 | <0.001% |
| chr11_450123_C_G | chr11:450123 | 0.354 | 0.081 | 0.082 | 0.0013% |
| chr11_448108_C_T | chr11:448108 | -0.354 | -0.145 | -0.318 | <0.001% |
| chr11_450463_G_A | chr11:450463 | 0.045 | 0.100 | 0.624 | 0.485% |
| chr11_450558_G_T | chr11:450558 | 0.035 | 0.095 | 0.624 | — |
| chr11_450513_G_A | chr11:450513 | -0.015 | 0.061 | 0.612 | <0.001% |
| chr11_448422_G_A | chr11:448422 | -0.343 | -0.170 | -0.294 | 0.0039% |
| chr11_450564_G_T | chr11:450564 | 0.018 | 0.082 | 0.600 | — |
| chr11_450619_G_T | chr11:450619 | 0.027 | 0.079 | 0.600 | — |
| chr11_441839_C_G | chr11:441839 | -0.047 | -0.068 | -0.588 | 0.0020% |
| chr11_442059_G_A | chr11:442059 | -0.055 | -0.038 | -0.586 | 0.015% |
| chr11_448403_G_T | chr11:448403 | 0.329 | -0.003 | -0.200 | <0.001% |
| chr11_448311_G_C | chr11:448311 | -0.323 | -0.071 | -0.494 | 0.0013% |
| chr11_448153_C_A | chr11:448153 | 0.176 | 0.150 | 0.565 | <0.001% |
| chr11_450505_C_T | chr11:450505 | 0.005 | 0.075 | 0.565 | <0.001% |
| chr11_450558_G_A | chr11:450558 | 0.038 | 0.088 | 0.565 | — |
| chr11_441840_G_A | chr11:441840 | 0.073 | 0.117 | 0.553 | 0.023% |
| chr11_448243_A_G | chr11:448243 | -0.263 | -0.275 | -0.553 | <0.001% |
| chr11_448388_G_A | chr11:448388 | -0.176 | -0.231 | -0.553 | <0.001% |
| chr11_441948_A_G | chr11:441948 | 0.141 | 0.099 | 0.541 | 2.75% |
| chr11_448243_A_C | chr11:448243 | -0.306 | -0.254 | -0.388 | <0.001% |
| chr11_448073_C_T | chr11:448073 | -0.027 | -0.051 | -0.529 | 0.0013% |
| chr11_450562_A_G | chr11:450562 | -0.022 | -0.063 | -0.529 | — |
| chr11_448345_G_A | chr11:448345 | 0.293 | 0.099 | 0.129 | <0.001% |
| chr11_450512_C_T | chr11:450512 | 0.037 | 0.067 | 0.518 | 0.0013% |
| chr11_450561_C_T | chr11:450561 | 0.033 | 0.071 | 0.518 | — |
| chr11_450572_G_T | chr11:450572 | -0.003 | 0.067 | 0.518 | — |
| chr11_450333_C_G | chr11:450333 | 0.291 | 0.086 | -0.224 | 0.0033% |
| chr11_445894_C_T | chr11:445894 | 0.288 | 0.409 | 0.400 | <0.001% |
| chr11_450550_C_T | chr11:450550 | 0.062 | 0.062 | 0.506 | 0.0013% |
| chr11_450564_G_A | chr11:450564 | 0.010 | 0.085 | 0.506 | <0.001% |
| chr11_450574_C_A | chr11:450574 | 0.020 | 0.047 | 0.506 | — |
| chr11_450586_G_A | chr11:450586 | 0.003 | 0.066 | 0.506 | — |
| chr11_446167_G_C | chr11:446167 | -0.097 | -0.093 | -0.500 | 0.0027% |
| chr11_450399_T_C | chr11:450399 | -0.023 | -0.131 | -0.494 | <0.001% |
| chr11_450556_C_A | chr11:450556 | -0.025 | 0.049 | 0.494 | — |
| chr11_448239_C_T | chr11:448239 | -0.276 | -0.146 | -0.376 | <0.001% |
| chr11_442057_G_T | chr11:442057 | -0.121 | -0.041 | -0.483 | <0.001% |
| chr11_448202_C_T | chr11:448202 | -0.043 | 0.056 | 0.482 | 0.0026% |
| chr11_448240_G_C | chr11:448240 | -0.273 | -0.245 | -0.353 | <0.001% |
| chr11_450434_A_C | chr11:450434 | -0.012 | -0.076 | -0.482 | <0.001% |
| chr11_450570_G_A | chr11:450570 | 0.038 | 0.067 | 0.482 | <0.001% |
| chr11_450572_G_A | chr11:450572 | -0.007 | 0.051 | 0.482 | — |
| chr11_445856_G_A | chr11:445856 | 0.271 | 0.419 | 0.471 | 0.0020% |
| chr11_445871_C_A | chr11:445871 | 0.270 | 0.178 | 0.159 | <0.001% |
| chr11_445821_G_C | chr11:445821 | 0.267 | 0.256 | 0.282 | <0.001% |
| chr11_448062_T_C | chr11:448062 | 0.213 | 0.203 | 0.471 | <0.001% |
| chr11_450152_C_T | chr11:450152 | -0.190 | -0.234 | -0.471 | <0.001% |
| chr11_450467_C_T | chr11:450467 | 0.022 | 0.071 | 0.471 | <0.001% |
| chr11_450502_C_T | chr11:450502 | 0.003 | 0.067 | 0.471 | <0.001% |
| chr11_450503_C_T | chr11:450503 | 0.023 | 0.069 | 0.471 | <0.001% |
| chr11_450570_G_T | chr11:450570 | 0.012 | 0.053 | 0.471 | — |
| chr11_450512_C_A | chr11:450512 | 0.038 | 0.069 | 0.459 | 0.0066% |
| chr11_442077_C_T | chr11:442077 | -0.088 | -0.065 | -0.456 | 0.0039% |
| chr11_441961_C_T | chr11:441961 | -0.091 | -0.063 | -0.450 | 0.0046% |
| chr11_441854_G_A | chr11:441854 | 0.068 | 0.096 | 0.447 | 2.27% |
| chr11_450556_C_T | chr11:450556 | -0.025 | 0.049 | 0.447 | — |
| chr11_450560_C_T | chr11:450560 | -0.043 | 0.063 | 0.447 | — |
| chr11_450567_A_C | chr11:450567 | -0.080 | -0.084 | -0.447 | — |
| chr11_450569_C_A | chr11:450569 | 0.018 | 0.076 | 0.447 | — |
| chr11_450569_C_T | chr11:450569 | 0.022 | 0.065 | 0.447 | 0.0020% |
| chr11_450571_G_T | chr11:450571 | 0.012 | 0.027 | 0.447 | — |
| chr11_450573_C_T | chr11:450573 | 0.003 | 0.063 | 0.447 | — |
| chr11_446189_C_T | chr11:446189 | 0.128 | 0.184 | 0.441 | 0.0033% |
| chr11_445840_G_A | chr11:445840 | -0.209 | -0.253 | -0.435 | <0.001% |
| chr11_448220_C_T | chr11:448220 | 0.070 | 0.089 | 0.435 | <0.001% |
| chr11_448349_T_G | chr11:448349 | 0.246 | 0.127 | 0.212 | <0.001% |
| chr11_450196_G_A | chr11:450196 | -0.113 | -0.193 | -0.435 | 0.0020% |
| chr11_450428_G_A | chr11:450428 | 0.007 | 0.055 | 0.435 | <0.001% |
| chr11_450567_A_G | chr11:450567 | 0.002 | -0.063 | -0.435 | — |
| chr11_450571_G_A | chr11:450571 | 0.020 | 0.036 | 0.435 | — |
| chr11_450573_C_A | chr11:450573 | -0.002 | 0.044 | 0.435 | — |
| chr11_448074_A_G | chr11:448074 | -0.072 | -0.079 | -0.424 | <0.001% |
| chr11_448355_T_G | chr11:448355 | -0.166 | 0.041 | 0.424 | 0.0026% |
| chr11_450575_G_T | chr11:450575 | 0.008 | 0.081 | 0.424 | — |
| chr11_450580_A_C | chr11:450580 | -0.002 | -0.062 | -0.424 | — |
| chr11_448036_G_T | chr11:448036 | -0.238 | -0.288 | -0.047 | <0.001% |
| chr11_450586_G_T | chr11:450586 | -0.003 | 0.062 | 0.412 | — |
| chr11_450587_C_A | chr11:450587 | 0.020 | 0.032 | 0.412 | — |
| chr11_448555_C_G | chr11:448555 | 0.230 | 0.086 | 0.176 | 0.0046% |
| chr11_450405_G_A | chr11:450405 | -0.043 | 0.041 | 0.400 | <0.001% |
| chr11_450445_G_A | chr11:450445 | -0.012 | 0.062 | 0.400 | <0.001% |
| chr11_450559_G_T | chr11:450559 | -0.023 | 0.037 | 0.400 | — |
| chr11_450560_C_A | chr11:450560 | -0.030 | 0.057 | 0.400 | — |
| chr11_450575_G_A | chr11:450575 | 0.008 | 0.048 | 0.400 | — |
| chr11_448395_A_G | chr11:448395 | 0.223 | 0.038 | 0.082 | 0.0021% |
| chr11_450383_C_T | chr11:450383 | -0.050 | 0.063 | 0.388 | 0.0026% |
| chr11_450487_G_A | chr11:450487 | 0.017 | 0.066 | 0.388 | <0.001% |
| chr11_450545_C_T | chr11:450545 | 0.010 | 0.056 | 0.388 | 0.0026% |
| chr11_450557_C_T | chr11:450557 | 0.003 | 0.042 | 0.388 | 0.0013% |
| chr11_450574_C_T | chr11:450574 | 0.018 | 0.039 | 0.388 | — |
| chr11_448402_C_A | chr11:448402 | -0.216 | -0.084 | -0.141 | <0.001% |
| chr11_441726_G_A | chr11:441726 | 0.105 | 0.107 | 0.376 | 0.030% |
| chr11_445849_T_G | chr11:445849 | -0.213 | -0.475 | -0.371 | <0.001% |
| chr11_446164_C_G | chr11:446164 | -0.015 | 0.029 | 0.376 | 0.016% |
| chr11_450562_A_C | chr11:450562 | -0.037 | -0.056 | -0.376 | — |
| chr11_450578_C_T | chr11:450578 | 0.005 | 0.070 | 0.376 | 0.0013% |
| chr11_445941_C_A | chr11:445941 | 0.211 | 0.364 | 0.329 | 0.240% |
| chr11_442222_A_G | chr11:442222 | 0.126 | 0.068 | 0.367 | 0.0059% |
| chr11_446163_C_T | chr11:446163 | 0.045 | 0.118 | 0.365 | 0.0013% |
| chr11_448221_C_G | chr11:448221 | 0.043 | 0.076 | 0.365 | 0.0013% |
| chr11_448250_G_C | chr11:448250 | 0.206 | 0.195 | 0.294 | 0.0020% |
| chr11_450331_C_G | chr11:450331 | 0.158 | -0.074 | -0.365 | <0.001% |
| chr11_450431_C_T | chr11:450431 | -0.007 | 0.049 | 0.365 | 0.0039% |
| chr11_450559_G_A | chr11:450559 | -0.013 | 0.041 | 0.365 | — |
| chr11_450578_C_A | chr11:450578 | 0.005 | 0.070 | 0.365 | — |
| chr11_450588_C_A | chr11:450588 | 0.018 | 0.056 | 0.365 | — |
| chr11_448118_C_T | chr11:448118 | -0.203 | -0.104 | -0.106 | <0.001% |
| chr11_442168_G_C | chr11:442168 | -0.201 | -0.083 | 0.013 | 0.016% |
| chr11_450191_C_T | chr11:450191 | 0.063 | 0.093 | 0.353 | <0.001% |
| chr11_450581_G_T | chr11:450581 | 0.060 | 0.046 | 0.353 | — |
| chr11_450584_C_A | chr11:450584 | -0.010 | 0.038 | 0.353 | — |
| chr11_450162_G_C | chr11:450162 | -0.195 | -0.117 | -0.118 | <0.001% |
| chr11_442010_G_A | chr11:442010 | 0.067 | 0.024 | 0.341 | 0.0013% |
| chr11_446166_C_T | chr11:446166 | -0.005 | 0.086 | 0.341 | 0.679% |
| chr11_448374_C_T | chr11:448374 | 0.193 | -0.003 | 0.082 | 0.0013% |
| chr11_450354_C_T | chr11:450354 | 0.193 | 0.072 | 0.200 | 0.0020% |
| chr11_450576_G_A | chr11:450576 | 0.018 | 0.058 | 0.341 | <0.001% |
| chr11_450576_G_T | chr11:450576 | 0.007 | 0.042 | 0.341 | — |
| chr11_450587_C_T | chr11:450587 | -0.012 | 0.032 | 0.341 | — |
| chr11_450281_A_T | chr11:450281 | -0.191 | -0.112 | -0.153 | <0.001% |
| chr11_448109_G_T | chr11:448109 | 0.097 | 0.056 | 0.329 | 0.0013% |
| chr11_448419_T_C | chr11:448419 | 0.077 | 0.066 | -0.329 | 0.0013% |
| chr11_450328_G_C | chr11:450328 | 0.186 | 0.052 | -0.165 | <0.001% |
| chr11_450403_C_T | chr11:450403 | -0.038 | -0.016 | 0.329 | <0.001% |
| chr11_450463_G_T | chr11:450463 | 0.048 | 0.037 | 0.329 | <0.001% |
| chr11_450514_C_G | chr11:450514 | 0.050 | 0.058 | 0.329 | <0.001% |
| chr11_450574_C_G | chr11:450574 | 0.095 | 0.016 | 0.329 | — |
| chr11_450579_G_T | chr11:450579 | 0.023 | 0.075 | 0.329 | — |
| chr11_448037_G_A | chr11:448037 | -0.184 | -0.173 | 0.047 | <0.001% |
| chr11_448247_C_A | chr11:448247 | -0.116 | -0.056 | -0.318 | <0.001% |
| chr11_448276_G_A | chr11:448276 | -0.070 | -0.152 | -0.318 | 0.0013% |
| chr11_450561_C_A | chr11:450561 | 0.002 | 0.047 | 0.318 | — |
| chr11_450577_G_A | chr11:450577 | 0.017 | 0.065 | 0.318 | — |
| chr11_450585_C_A | chr11:450585 | 0.018 | 0.041 | 0.318 | — |
| chr11_450585_C_T | chr11:450585 | 0.027 | 0.042 | 0.318 | <0.001% |
| chr11_450614_C_T | chr11:450614 | 0.045 | 0.055 | 0.318 | — |
| chr11_450640_G_T | chr11:450640 | -0.038 | 0.067 | 0.318 | — |
| chr11_450137_C_G | chr11:450137 | 0.178 | 0.088 | 0.000 | <0.001% |
| chr11_442089_C_T | chr11:442089 | 0.079 | 0.074 | 0.310 | 0.016% |
| chr11_450155_A_T | chr11:450155 | 0.123 | 0.245 | 0.306 | 0.0026% |
| chr11_450167_G_C | chr11:450167 | -0.095 | -0.052 | -0.306 | 0.0013% |
| chr11_450565_C_T | chr11:450565 | 0.020 | 0.049 | 0.306 | — |
| chr11_450580_A_G | chr11:450580 | -0.047 | -0.048 | -0.306 | — |
| chr11_450583_G_T | chr11:450583 | 0.010 | 0.029 | 0.306 | — |
| chr11_441951_T_C | chr11:441951 | 0.027 | 0.018 | 0.300 | <0.001% |
| chr11_448346_G_A | chr11:448346 | 0.170 | 0.023 | -0.106 | 0.0026% |
| chr11_442189_C_T | chr11:442189 | -0.168 | -0.088 | -0.065 | 0.0013% |
| chr11_442018_C_G | chr11:442018 | 0.085 | 0.052 | 0.297 | 0.0039% |
Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.