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NLGN2
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near NLGN2
chr17:7,307,844..7,519,860, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr17_7315383_A_T | chr17:7315383 | -0.993 | -0.662 | -1.000 | — |
| chr17_7315384_C_A | chr17:7315384 | -0.767 | -0.556 | -1.000 | — |
| chr17_7315383_A_C | chr17:7315383 | -0.897 | -0.655 | -1.000 | — |
| chr17_7315382_C_G | chr17:7315382 | -0.704 | -0.462 | -1.000 | — |
| chr17_7315388_C_T | chr17:7315388 | -0.667 | -0.333 | -1.000 | — |
| chr17_7315386_T_C | chr17:7315386 | -0.606 | -0.423 | -1.000 | — |
| chr17_7315386_T_G | chr17:7315386 | -0.607 | -0.394 | -1.000 | — |
| chr17_7315388_C_G | chr17:7315388 | -0.657 | -0.332 | -1.000 | — |
| chr17_7315387_C_G | chr17:7315387 | -0.682 | -0.345 | -0.929 | — |
| chr17_7315383_A_G | chr17:7315383 | -0.527 | -0.504 | -1.000 | — |
| chr17_7315386_T_A | chr17:7315386 | -0.576 | -0.353 | -1.000 | — |
| chr17_7315388_C_A | chr17:7315388 | -0.626 | -0.275 | -1.000 | <0.001% |
| chr17_7394891_A_C | chr17:7394891 | -0.506 | -0.382 | -1.000 | — |
| chr17_7315407_T_C | chr17:7315407 | -0.333 | -0.272 | -1.000 | — |
| chr17_7315410_C_A | chr17:7315410 | -0.236 | -0.181 | -1.000 | — |
| chr17_7347935_C_T | chr17:7347935 | 0.602 | 0.740 | 0.941 | — |
| chr17_7315410_C_G | chr17:7315410 | -0.260 | -0.236 | -1.000 | — |
| chr17_7315382_C_T | chr17:7315382 | -0.336 | -0.393 | -1.000 | — |
| chr17_7315387_C_T | chr17:7315387 | -0.584 | -0.298 | -0.824 | — |
| chr17_7315381_T_G | chr17:7315381 | -0.321 | -0.473 | -1.000 | — |
| chr17_7315408_T_C | chr17:7315408 | -0.203 | -0.148 | -0.988 | — |
| chr17_7315410_C_T | chr17:7315410 | -0.193 | -0.166 | -0.971 | — |
| chr17_7394885_A_C | chr17:7394885 | -0.130 | -0.270 | -0.941 | — |
| chr17_7315380_G_T | chr17:7315380 | -0.195 | -0.381 | -0.935 | — |
| chr17_7315384_C_G | chr17:7315384 | -0.384 | -0.319 | -0.918 | — |
| chr17_7315407_T_G | chr17:7315407 | -0.396 | -0.303 | -0.912 | — |
| chr17_7394917_T_G | chr17:7394917 | 0.511 | 0.481 | 0.729 | — |
| chr17_7315380_G_C | chr17:7315380 | -0.236 | -0.336 | -0.894 | — |
| chr17_7315452_G_C | chr17:7315452 | -0.210 | -0.036 | -0.894 | — |
| chr17_7347940_C_G | chr17:7347940 | 0.499 | 0.628 | 0.859 | — |
| chr17_7394914_G_T | chr17:7394914 | -0.078 | -0.275 | -0.871 | — |
| chr17_7315408_T_G | chr17:7315408 | -0.133 | -0.195 | -0.865 | — |
| chr17_7315389_G_A | chr17:7315389 | -0.448 | -0.270 | -0.829 | <0.001% |
| chr17_7394892_C_G | chr17:7394892 | -0.468 | -0.263 | -0.659 | — |
| chr17_7315464_G_C | chr17:7315464 | -0.431 | -0.037 | 0.071 | — |
| chr17_7315389_G_C | chr17:7315389 | -0.428 | -0.234 | -0.665 | — |
| chr17_7315408_T_A | chr17:7315408 | -0.077 | -0.088 | -0.747 | — |
| chr17_7347939_T_G | chr17:7347939 | 0.393 | 0.530 | 0.741 | — |
| chr17_7315453_A_C | chr17:7315453 | -0.408 | -0.338 | -0.465 | — |
| chr17_7315441_G_C | chr17:7315441 | 0.406 | 0.344 | 0.282 | — |
| chr17_7394885_A_T | chr17:7394885 | -0.163 | -0.231 | -0.718 | — |
| chr17_7315453_A_T | chr17:7315453 | -0.391 | -0.298 | -0.459 | — |
| chr17_7315381_T_C | chr17:7315381 | -0.110 | -0.334 | -0.688 | — |
| chr17_7315452_G_A | chr17:7315452 | -0.388 | -0.166 | -0.171 | — |
| chr17_7315451_G_T | chr17:7315451 | -0.386 | -0.287 | -0.259 | — |
| chr17_7315453_A_G | chr17:7315453 | -0.386 | -0.320 | -0.512 | — |
| chr17_7315387_C_A | chr17:7315387 | -0.379 | -0.176 | -0.600 | — |
| chr17_7315390_G_A | chr17:7315390 | -0.266 | -0.104 | -0.659 | — |
| chr17_7315451_G_C | chr17:7315451 | -0.371 | -0.241 | -0.018 | — |
| chr17_7315450_C_G | chr17:7315450 | -0.364 | -0.221 | -0.306 | — |
| chr17_7315409_C_T | chr17:7315409 | -0.256 | -0.129 | -0.641 | — |
| chr17_7315451_G_A | chr17:7315451 | -0.361 | -0.253 | -0.371 | — |
| chr17_7315450_C_T | chr17:7315450 | -0.359 | -0.241 | -0.382 | <0.001% |
| chr17_7394905_C_G | chr17:7394905 | -0.038 | 0.173 | 0.635 | <0.001% |
| chr17_7315379_C_G | chr17:7315379 | -0.185 | -0.211 | -0.612 | — |
| chr17_7315412_G_A | chr17:7315412 | -0.133 | -0.143 | -0.612 | — |
| chr17_7394886_G_A | chr17:7394886 | 0.103 | 0.213 | 0.612 | — |
| chr17_7315422_G_C | chr17:7315422 | 0.339 | 0.189 | 0.335 | — |
| chr17_7315381_T_A | chr17:7315381 | -0.148 | -0.316 | -0.594 | — |
| chr17_7315454_A_G | chr17:7315454 | -0.255 | -0.282 | -0.576 | — |
| chr17_7394920_A_G | chr17:7394920 | 0.068 | 0.228 | 0.576 | — |
| chr17_7315454_A_T | chr17:7315454 | -0.215 | -0.217 | -0.571 | — |
| chr17_7315380_G_A | chr17:7315380 | -0.053 | -0.242 | -0.565 | 0.0072% |
| chr17_7315416_C_G | chr17:7315416 | -0.319 | -0.148 | -0.353 | 0.0013% |
| chr17_7315432_C_G | chr17:7315432 | -0.319 | -0.133 | -0.506 | — |
| chr17_7315378_G_C | chr17:7315378 | -0.130 | -0.188 | -0.553 | 0.0013% |
| chr17_7315429_G_C | chr17:7315429 | -0.309 | -0.176 | -0.300 | — |
| chr17_7315409_C_G | chr17:7315409 | -0.306 | -0.195 | -0.294 | — |
| chr17_7347939_T_A | chr17:7347939 | 0.298 | 0.407 | 0.535 | — |
| chr17_7315406_C_G | chr17:7315406 | -0.116 | -0.093 | -0.529 | — |
| chr17_7315432_C_A | chr17:7315432 | -0.300 | -0.145 | -0.247 | — |
| chr17_7394897_T_G | chr17:7394897 | 0.115 | 0.221 | 0.529 | — |
| chr17_7315377_T_G | chr17:7315377 | -0.128 | -0.194 | -0.524 | — |
| chr17_7315454_A_C | chr17:7315454 | -0.283 | -0.277 | -0.524 | — |
| chr17_7315452_G_T | chr17:7315452 | -0.295 | -0.162 | -0.129 | — |
| chr17_7347929_G_T | chr17:7347929 | 0.293 | 0.265 | 0.300 | — |
| chr17_7394893_A_C | chr17:7394893 | -0.261 | -0.154 | -0.518 | — |
| chr17_7394915_C_G | chr17:7394915 | -0.288 | -0.151 | -0.282 | — |
| chr17_7394888_G_C | chr17:7394888 | -0.123 | -0.160 | -0.506 | — |
| chr17_7394911_T_A | chr17:7394911 | -0.286 | -0.216 | -0.412 | — |
| chr17_7315409_C_A | chr17:7315409 | -0.163 | -0.102 | -0.500 | — |
| chr17_7315456_C_G | chr17:7315456 | -0.283 | -0.147 | -0.012 | — |
| chr17_7315413_A_G | chr17:7315413 | 0.280 | 0.458 | 0.400 | — |
| chr17_7394891_A_G | chr17:7394891 | -0.178 | -0.156 | -0.494 | — |
| chr17_7394894_C_T | chr17:7394894 | -0.203 | -0.150 | -0.494 | — |
| chr17_7315422_G_T | chr17:7315422 | 0.270 | 0.124 | 0.341 | — |
| chr17_7315448_G_T | chr17:7315448 | 0.266 | 0.113 | 0.200 | — |
| chr17_7394888_G_T | chr17:7394888 | -0.080 | -0.135 | -0.471 | — |
| chr17_7347899_A_C | chr17:7347899 | 0.265 | 0.070 | 0.094 | — |
| chr17_7315418_C_T | chr17:7315418 | -0.263 | -0.100 | -0.006 | <0.001% |
| chr17_7315455_G_T | chr17:7315455 | -0.263 | -0.284 | -0.318 | — |
| chr17_7394914_G_C | chr17:7394914 | -0.125 | -0.201 | -0.459 | — |
| chr17_7394916_T_A | chr17:7394916 | -0.256 | -0.081 | -0.165 | — |
| chr17_7315503_G_T | chr17:7315503 | -0.146 | 0.036 | -0.447 | — |
| chr17_7315439_G_A | chr17:7315439 | -0.161 | -0.055 | -0.441 | — |
| chr17_7315422_G_A | chr17:7315422 | 0.246 | 0.161 | 0.318 | — |
| chr17_7315433_T_C | chr17:7315433 | -0.246 | -0.209 | -0.288 | — |
| chr17_7394893_A_G | chr17:7394893 | 0.208 | 0.142 | 0.435 | — |
| chr17_7394914_G_A | chr17:7394914 | -0.138 | -0.156 | -0.435 | — |
| chr17_7394911_T_G | chr17:7394911 | -0.241 | -0.189 | -0.271 | — |
| chr17_7315505_G_C | chr17:7315505 | -0.238 | 0.096 | -0.247 | — |
| chr17_7394917_T_A | chr17:7394917 | 0.238 | 0.264 | 0.376 | — |
| chr17_7315411_G_A | chr17:7315411 | -0.063 | -0.096 | -0.418 | — |
| chr17_7315379_C_A | chr17:7315379 | 0.235 | 0.026 | 0.412 | — |
| chr17_7347903_T_C | chr17:7347903 | -0.062 | -0.074 | -0.412 | — |
| chr17_7394890_A_G | chr17:7394890 | -0.126 | -0.086 | -0.412 | — |
| chr17_7315385_A_G | chr17:7315385 | -0.230 | -0.140 | -0.147 | — |
| chr17_7315413_A_C | chr17:7315413 | -0.223 | -0.173 | -0.406 | — |
| chr17_7347905_C_G | chr17:7347905 | 0.166 | 0.173 | 0.406 | — |
| chr17_7394912_T_G | chr17:7394912 | -0.230 | -0.214 | -0.353 | — |
| chr17_7315428_C_G | chr17:7315428 | -0.226 | -0.122 | -0.194 | — |
| chr17_7315499_G_A | chr17:7315499 | 0.226 | 0.234 | 0.200 | 0.0013% |
| chr17_7315500_A_C | chr17:7315500 | 0.002 | -0.046 | 0.400 | — |
| chr17_7394919_C_G | chr17:7394919 | -0.156 | -0.103 | -0.400 | — |
| chr17_7315461_T_G | chr17:7315461 | -0.225 | -0.121 | -0.041 | — |
| chr17_7315414_G_A | chr17:7315414 | -0.223 | -0.069 | -0.300 | — |
| chr17_7347876_A_C | chr17:7347876 | -0.038 | -0.094 | -0.394 | — |
| chr17_7315467_G_A | chr17:7315467 | -0.221 | -0.112 | -0.271 | 0.0013% |
| chr17_7315411_G_C | chr17:7315411 | -0.100 | -0.148 | -0.388 | — |
| chr17_7315505_G_T | chr17:7315505 | -0.146 | 0.023 | -0.388 | — |
| chr17_7394892_C_A | chr17:7394892 | -0.146 | 0.084 | 0.388 | — |
| chr17_7394908_T_A | chr17:7394908 | -0.218 | -0.193 | -0.388 | — |
| chr17_7347921_G_C | chr17:7347921 | 0.218 | 0.090 | 0.259 | — |
| chr17_7315430_A_C | chr17:7315430 | -0.173 | -0.203 | -0.382 | — |
| chr17_7315439_G_T | chr17:7315439 | -0.115 | -0.109 | -0.382 | — |
| chr17_7315440_T_A | chr17:7315440 | -0.206 | -0.133 | -0.382 | — |
| chr17_7315434_C_G | chr17:7315434 | -0.213 | -0.029 | -0.318 | — |
| chr17_7315440_T_C | chr17:7315440 | -0.123 | -0.173 | -0.376 | — |
| chr17_7315468_G_T | chr17:7315468 | 0.007 | 0.104 | 0.376 | — |
| chr17_7315508_C_T | chr17:7315508 | -0.017 | 0.206 | 0.376 | — |
| chr17_7394887_C_T | chr17:7394887 | -0.042 | -0.121 | -0.376 | — |
| chr17_7394907_C_G | chr17:7394907 | -0.213 | -0.057 | -0.035 | — |
| chr17_7394913_G_T | chr17:7394913 | -0.121 | -0.184 | -0.376 | — |
| chr17_7394915_C_A | chr17:7394915 | -0.201 | -0.175 | -0.376 | — |
| chr17_7315475_G_A | chr17:7315475 | -0.211 | -0.057 | 0.129 | — |
| chr17_7347940_C_A | chr17:7347940 | 0.211 | 0.249 | 0.312 | — |
| chr17_7315447_A_C | chr17:7315447 | -0.035 | -0.234 | -0.371 | — |
| chr17_7315448_G_A | chr17:7315448 | 0.210 | 0.042 | 0.182 | <0.001% |
| chr17_7315455_G_C | chr17:7315455 | 0.055 | -0.166 | -0.371 | — |
| chr17_7315438_G_C | chr17:7315438 | -0.208 | -0.192 | 0.176 | — |
| chr17_7347920_A_C | chr17:7347920 | 0.206 | 0.047 | 0.171 | — |
| chr17_7394887_C_A | chr17:7394887 | 0.017 | -0.117 | -0.365 | — |
| chr17_7394896_C_A | chr17:7394896 | -0.093 | -0.146 | -0.365 | — |
| chr17_7394910_A_C | chr17:7394910 | -0.206 | -0.207 | -0.318 | — |
| chr17_7394908_T_G | chr17:7394908 | -0.203 | -0.145 | -0.200 | — |
| chr17_7315447_A_T | chr17:7315447 | -0.201 | -0.235 | -0.265 | — |
| chr17_7315450_C_A | chr17:7315450 | -0.201 | -0.129 | -0.118 | — |
| chr17_7315377_T_A | chr17:7315377 | -0.103 | -0.129 | -0.353 | — |
| chr17_7394909_C_G | chr17:7394909 | 0.200 | 0.174 | 0.282 | — |
| chr17_7315481_T_A | chr17:7315481 | -0.196 | -0.099 | -0.035 | — |
| chr17_7315506_A_G | chr17:7315506 | -0.196 | -0.069 | -0.235 | — |
| chr17_7347920_A_G | chr17:7347920 | 0.196 | 0.046 | 0.229 | — |
| chr17_7315377_T_C | chr17:7315377 | -0.065 | -0.103 | -0.341 | — |
| chr17_7347920_A_T | chr17:7347920 | 0.191 | 0.052 | 0.176 | — |
| chr17_7315376_C_T | chr17:7315376 | 0.148 | 0.109 | 0.335 | <0.001% |
| chr17_7315443_A_C | chr17:7315443 | 0.042 | 0.095 | 0.335 | <0.001% |
| chr17_7347935_C_G | chr17:7347935 | 0.188 | 0.203 | 0.259 | — |
| chr17_7347937_C_A | chr17:7347937 | 0.188 | 0.184 | 0.212 | — |
| chr17_7315385_A_C | chr17:7315385 | -0.186 | -0.145 | -0.265 | — |
| chr17_7315412_G_C | chr17:7315412 | -0.113 | -0.140 | -0.329 | — |
| chr17_7315412_G_T | chr17:7315412 | -0.057 | -0.105 | -0.329 | — |
| chr17_7315456_C_A | chr17:7315456 | -0.186 | -0.128 | -0.153 | 0.0013% |
| chr17_7315457_G_A | chr17:7315457 | 0.115 | -0.062 | 0.329 | — |
| chr17_7394885_A_G | chr17:7394885 | -0.040 | -0.109 | -0.329 | — |
| chr17_7394910_A_T | chr17:7394910 | -0.113 | -0.176 | -0.329 | — |
| chr17_7394918_C_A | chr17:7394918 | 0.186 | 0.145 | 0.294 | — |
| chr17_7315441_G_A | chr17:7315441 | -0.185 | -0.086 | -0.112 | — |
| chr17_7315428_C_A | chr17:7315428 | -0.183 | -0.062 | -0.159 | — |
| chr17_7315440_T_G | chr17:7315440 | -0.183 | -0.126 | -0.312 | — |
| chr17_7315505_G_A | chr17:7315505 | -0.183 | 0.117 | -0.129 | — |
| chr17_7394917_T_C | chr17:7394917 | 0.181 | 0.190 | 0.294 | — |
| chr17_7315415_T_C | chr17:7315415 | -0.037 | -0.210 | -0.318 | — |
| chr17_7315417_A_G | chr17:7315417 | -0.170 | -0.227 | -0.318 | — |
| chr17_7315419_G_T | chr17:7315419 | 0.180 | 0.096 | 0.171 | — |
| chr17_7315473_C_G | chr17:7315473 | -0.083 | -0.063 | -0.318 | — |
| chr17_7315493_C_G | chr17:7315493 | -0.003 | -0.051 | 0.318 | — |
| chr17_7347922_G_C | chr17:7347922 | 0.180 | 0.099 | 0.229 | — |
| chr17_7394911_T_C | chr17:7394911 | -0.180 | -0.174 | -0.224 | — |
| chr17_7315364_G_A | chr17:7315364 | 0.178 | 0.079 | 0.065 | — |
| chr17_7315401_G_A | chr17:7315401 | 0.150 | 0.152 | 0.312 | 0.0020% |
| chr17_7315424_C_T | chr17:7315424 | 0.176 | 0.135 | 0.271 | 0.0020% |
| chr17_7315407_T_A | chr17:7315407 | -0.080 | -0.089 | -0.306 | — |
| chr17_7315424_C_G | chr17:7315424 | 0.173 | 0.136 | 0.094 | — |
| chr17_7315427_C_T | chr17:7315427 | 0.173 | 0.162 | 0.153 | — |
| chr17_7315449_G_T | chr17:7315449 | -0.126 | -0.198 | -0.306 | — |
| chr17_7315456_C_T | chr17:7315456 | 0.007 | 0.074 | 0.306 | — |
| chr17_7315469_G_T | chr17:7315469 | -0.005 | -0.024 | -0.306 | — |
| chr17_7315503_G_C | chr17:7315503 | -0.103 | 0.030 | -0.306 | — |
| chr17_7347916_C_G | chr17:7347916 | 0.173 | 0.039 | 0.182 | — |
| chr17_7394892_C_T | chr17:7394892 | -0.173 | -0.058 | -0.082 | — |
| chr17_7394907_C_A | chr17:7394907 | -0.173 | -0.060 | -0.188 | <0.001% |
| chr17_7394909_C_A | chr17:7394909 | -0.171 | -0.085 | -0.165 | — |
| chr17_7315379_C_T | chr17:7315379 | -0.065 | -0.152 | -0.300 | — |
| chr17_7347909_T_C | chr17:7347909 | 0.003 | -0.077 | -0.300 | — |
| chr17_7315372_G_A | chr17:7315372 | 0.168 | 0.179 | 0.218 | — |
| chr17_7347922_G_T | chr17:7347922 | 0.168 | 0.114 | 0.212 | — |
| chr17_7394905_C_A | chr17:7394905 | -0.168 | -0.066 | -0.247 | — |
| chr17_7315419_G_C | chr17:7315419 | 0.166 | 0.006 | 0.012 | — |
| chr17_7315436_C_A | chr17:7315436 | 0.166 | 0.226 | -0.012 | — |
| chr17_7315439_G_C | chr17:7315439 | -0.018 | -0.077 | -0.294 | — |
Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.