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PCDH1
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near PCDH1
chr5:141,753,089..141,978,410, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr5_141876085_C_G | chr5:141876085 | 0.502 | 0.164 | 0.588 | — |
| chr5_141876063_C_G | chr5:141876063 | -0.463 | -0.138 | -0.376 | — |
| chr5_141852869_A_G | chr5:141852869 | -0.171 | -0.133 | -0.806 | — |
| chr5_141876059_C_A | chr5:141876059 | 0.371 | 0.220 | 0.282 | — |
| chr5_141876066_T_C | chr5:141876066 | -0.363 | -0.109 | -0.400 | — |
| chr5_141876075_A_C | chr5:141876075 | -0.346 | -0.036 | -0.135 | — |
| chr5_141852878_A_G | chr5:141852878 | -0.138 | -0.074 | -0.585 | — |
| chr5_141876045_A_C | chr5:141876045 | 0.328 | 0.039 | 0.206 | — |
| chr5_141876060_G_T | chr5:141876060 | 0.328 | 0.080 | 0.229 | — |
| chr5_141876033_G_T | chr5:141876033 | -0.283 | -0.115 | -0.559 | — |
| chr5_141876059_C_G | chr5:141876059 | -0.316 | -0.138 | -0.224 | — |
| chr5_141876050_C_A | chr5:141876050 | 0.308 | 0.137 | 0.359 | — |
| chr5_141852874_A_G | chr5:141852874 | -0.102 | -0.099 | -0.521 | — |
| chr5_141852873_C_G | chr5:141852873 | -0.096 | -0.083 | -0.503 | — |
| chr5_141876071_G_T | chr5:141876071 | -0.283 | -0.070 | -0.429 | — |
| chr5_141876079_C_T | chr5:141876079 | -0.268 | -0.010 | -0.253 | — |
| chr5_141876056_C_A | chr5:141876056 | -0.156 | -0.117 | -0.447 | — |
| chr5_141876062_G_C | chr5:141876062 | 0.251 | -0.032 | 0.141 | — |
| chr5_141876072_C_G | chr5:141876072 | 0.163 | 0.063 | 0.435 | — |
| chr5_141876079_C_G | chr5:141876079 | -0.246 | -0.030 | -0.171 | — |
| chr5_141852880_G_C | chr5:141852880 | 0.057 | 0.051 | 0.432 | — |
| chr5_141876071_G_C | chr5:141876071 | -0.241 | -0.044 | -0.224 | — |
| chr5_141876042_C_A | chr5:141876042 | 0.240 | -0.003 | -0.018 | — |
| chr5_141876048_G_T | chr5:141876048 | -0.240 | -0.046 | -0.318 | — |
| chr5_141852867_A_G | chr5:141852867 | -0.075 | -0.088 | -0.422 | — |
| chr5_141876065_C_T | chr5:141876065 | 0.238 | 0.046 | 0.294 | — |
| chr5_141852857_C_G | chr5:141852857 | -0.079 | -0.068 | -0.419 | — |
| chr5_141876075_A_T | chr5:141876075 | -0.235 | 0.018 | -0.229 | — |
| chr5_141876031_C_G | chr5:141876031 | -0.225 | -0.082 | -0.200 | — |
| chr5_141852858_T_G | chr5:141852858 | -0.082 | -0.075 | -0.396 | — |
| chr5_141876033_G_C | chr5:141876033 | -0.223 | -0.044 | -0.206 | — |
| chr5_141852881_G_C | chr5:141852881 | 0.053 | 0.046 | 0.391 | — |
| chr5_141852880_G_T | chr5:141852880 | 0.045 | 0.059 | 0.379 | — |
| chr5_141852861_G_C | chr5:141852861 | 0.063 | 0.056 | 0.376 | — |
| chr5_141876065_C_G | chr5:141876065 | 0.213 | 0.032 | 0.324 | — |
| chr5_141876048_G_C | chr5:141876048 | -0.211 | -0.003 | -0.165 | — |
| chr5_141876075_A_G | chr5:141876075 | -0.211 | -0.009 | -0.024 | — |
| chr5_141852853_G_C | chr5:141852853 | 0.061 | 0.052 | 0.365 | — |
| chr5_141876076_C_T | chr5:141876076 | -0.206 | 0.020 | -0.253 | — |
| chr5_141876080_C_T | chr5:141876080 | -0.206 | 0.090 | -0.229 | — |
| chr5_141852880_G_A | chr5:141852880 | 0.054 | 0.060 | 0.362 | — |
| chr5_141852881_G_T | chr5:141852881 | 0.056 | 0.051 | 0.362 | — |
| chr5_141876038_A_C | chr5:141876038 | -0.205 | -0.104 | -0.294 | — |
| chr5_141876057_A_C | chr5:141876057 | -0.203 | -0.096 | -0.306 | — |
| chr5_141852881_G_A | chr5:141852881 | 0.051 | 0.053 | 0.350 | — |
| chr5_141876080_C_A | chr5:141876080 | -0.198 | -0.025 | -0.288 | — |
| chr5_141852861_G_T | chr5:141852861 | 0.067 | 0.068 | 0.347 | — |
| chr5_141876030_G_T | chr5:141876030 | 0.195 | 0.095 | 0.153 | — |
| chr5_141852879_G_C | chr5:141852879 | 0.055 | 0.039 | 0.341 | — |
| chr5_141876076_C_G | chr5:141876076 | -0.191 | -0.030 | -0.194 | — |
| chr5_141852861_G_A | chr5:141852861 | 0.063 | 0.068 | 0.335 | — |
| chr5_141876059_C_T | chr5:141876059 | -0.186 | -0.019 | -0.135 | — |
| chr5_141852860_G_C | chr5:141852860 | 0.052 | 0.046 | 0.325 | — |
| chr5_141876051_T_C | chr5:141876051 | 0.183 | 0.082 | 0.276 | — |
| chr5_141876074_C_T | chr5:141876074 | 0.183 | 0.032 | 0.300 | — |
| chr5_141852879_G_T | chr5:141852879 | 0.053 | 0.043 | 0.316 | — |
| chr5_141876043_G_C | chr5:141876043 | -0.178 | -0.071 | -0.141 | — |
| chr5_141876057_A_T | chr5:141876057 | -0.178 | -0.107 | -0.288 | — |
| chr5_141852862_G_C | chr5:141852862 | 0.043 | 0.043 | 0.313 | — |
| chr5_141852877_G_A | chr5:141852877 | 0.051 | 0.058 | 0.313 | — |
| chr5_141876036_C_G | chr5:141876036 | 0.176 | 0.025 | 0.100 | — |
| chr5_141876079_C_A | chr5:141876079 | -0.176 | -0.023 | -0.253 | — |
| chr5_141876041_C_A | chr5:141876041 | -0.136 | -0.019 | -0.306 | — |
| chr5_141852855_G_T | chr5:141852855 | 0.084 | 0.061 | 0.304 | — |
| chr5_141876055_T_G | chr5:141876055 | -0.171 | -0.062 | -0.212 | — |
| chr5_141852853_G_T | chr5:141852853 | 0.054 | 0.053 | 0.301 | — |
| chr5_141852854_G_C | chr5:141852854 | 0.047 | 0.038 | 0.301 | — |
| chr5_141852856_G_C | chr5:141852856 | 0.039 | 0.046 | 0.300 | — |
| chr5_141852882_G_C | chr5:141852882 | 0.032 | 0.032 | 0.300 | — |
| chr5_141852879_G_A | chr5:141852879 | 0.038 | 0.042 | 0.296 | — |
| chr5_141876057_A_G | chr5:141876057 | -0.155 | -0.107 | -0.294 | — |
| chr5_141876031_C_A | chr5:141876031 | -0.165 | -0.066 | -0.188 | — |
| chr5_141876077_A_C | chr5:141876077 | -0.163 | -0.001 | -0.147 | — |
| chr5_141852860_G_T | chr5:141852860 | 0.044 | 0.049 | 0.285 | — |
| chr5_141876030_G_C | chr5:141876030 | 0.161 | 0.079 | 0.006 | — |
| chr5_141852853_G_A | chr5:141852853 | 0.051 | 0.053 | 0.282 | — |
| chr5_141876056_C_G | chr5:141876056 | -0.146 | -0.071 | -0.282 | — |
| chr5_141876078_C_A | chr5:141876078 | -0.160 | -0.009 | -0.200 | — |
| chr5_141852860_G_A | chr5:141852860 | 0.048 | 0.051 | 0.279 | — |
| chr5_141876073_A_G | chr5:141876073 | -0.155 | -0.022 | -0.112 | — |
| chr5_141876077_A_G | chr5:141876077 | 0.138 | 0.053 | 0.271 | — |
| chr5_141852876_G_C | chr5:141852876 | 0.042 | 0.033 | 0.266 | — |
| chr5_141852885_A_G | chr5:141852885 | -0.058 | -0.051 | -0.266 | — |
| chr5_141876080_C_G | chr5:141876080 | -0.150 | -0.009 | -0.182 | — |
| chr5_141876035_C_T | chr5:141876035 | 0.148 | 0.047 | 0.071 | — |
| chr5_141876070_A_C | chr5:141876070 | -0.145 | -0.027 | -0.171 | — |
| chr5_141852862_G_T | chr5:141852862 | 0.041 | 0.049 | 0.254 | — |
| chr5_141852854_G_T | chr5:141852854 | 0.047 | 0.045 | 0.253 | — |
| chr5_141852855_G_C | chr5:141852855 | 0.053 | 0.040 | 0.253 | — |
| chr5_141852856_G_A | chr5:141852856 | 0.039 | 0.052 | 0.253 | — |
| chr5_141876078_C_T | chr5:141876078 | -0.138 | -0.028 | -0.253 | — |
| chr5_141852862_G_A | chr5:141852862 | 0.038 | 0.048 | 0.250 | — |
| chr5_141852851_C_G | chr5:141852851 | -0.048 | -0.045 | -0.249 | — |
| chr5_141876039_G_C | chr5:141876039 | -0.140 | -0.062 | -0.200 | — |
| chr5_141876049_C_T | chr5:141876049 | -0.140 | -0.039 | -0.159 | — |
| chr5_141852882_G_T | chr5:141852882 | 0.033 | 0.040 | 0.243 | — |
| chr5_141852854_G_A | chr5:141852854 | 0.044 | 0.046 | 0.241 | — |
| chr5_141876034_C_T | chr5:141876034 | 0.135 | 0.062 | 0.176 | — |
| chr5_141852882_G_A | chr5:141852882 | 0.024 | 0.038 | 0.235 | — |
| chr5_141876041_C_G | chr5:141876041 | -0.133 | -0.029 | -0.212 | — |
| chr5_141876066_T_G | chr5:141876066 | 0.133 | 0.000 | 0.235 | — |
| chr5_141876056_C_T | chr5:141876056 | -0.131 | -0.086 | -0.165 | — |
| chr5_141852856_G_T | chr5:141852856 | 0.040 | 0.042 | 0.231 | — |
| chr5_141852875_G_C | chr5:141852875 | 0.043 | 0.032 | 0.229 | — |
| chr5_141876076_C_A | chr5:141876076 | -0.130 | -0.020 | -0.212 | — |
| chr5_141852852_A_G | chr5:141852852 | -0.058 | -0.058 | -0.225 | — |
| chr5_141852855_G_A | chr5:141852855 | 0.048 | 0.045 | 0.224 | — |
| chr5_141876055_T_A | chr5:141876055 | 0.005 | -0.071 | -0.218 | — |
| chr5_141876071_G_A | chr5:141876071 | -0.123 | 0.023 | -0.118 | — |
| chr5_141876035_C_A | chr5:141876035 | 0.121 | 0.067 | 0.106 | — |
| chr5_141876035_C_G | chr5:141876035 | 0.121 | 0.086 | 0.141 | — |
| chr5_141876046_C_T | chr5:141876046 | -0.121 | -0.023 | -0.182 | — |
| chr5_141876043_G_T | chr5:141876043 | -0.118 | -0.030 | -0.212 | — |
| chr5_141876039_G_T | chr5:141876039 | -0.118 | -0.057 | -0.129 | — |
| chr5_141852877_G_C | chr5:141852877 | 0.035 | 0.031 | 0.207 | — |
| chr5_141876047_C_G | chr5:141876047 | 0.116 | 0.047 | 0.141 | — |
| chr5_141852871_G_C | chr5:141852871 | 0.030 | 0.030 | 0.203 | — |
| chr5_141876036_C_A | chr5:141876036 | 0.115 | 0.047 | 0.147 | — |
| chr5_141876041_C_T | chr5:141876041 | -0.113 | -0.020 | -0.129 | — |
| chr5_141876064_G_A | chr5:141876064 | 0.075 | 0.086 | 0.200 | — |
| chr5_141876053_G_T | chr5:141876053 | -0.008 | -0.123 | -0.194 | — |
| chr5_141876032_A_T | chr5:141876032 | 0.108 | 0.074 | 0.141 | — |
| chr5_141876077_A_T | chr5:141876077 | -0.108 | -0.013 | -0.106 | — |
| chr5_141852864_T_G | chr5:141852864 | -0.032 | -0.026 | -0.187 | — |
| chr5_141852876_G_T | chr5:141852876 | 0.032 | 0.031 | 0.187 | — |
| chr5_141876064_G_C | chr5:141876064 | 0.105 | 0.008 | 0.106 | — |
| chr5_141852876_G_A | chr5:141852876 | 0.040 | 0.038 | 0.182 | — |
| chr5_141876067_C_G | chr5:141876067 | 0.043 | 0.044 | 0.182 | — |
| chr5_141852794_T_C | chr5:141852794 | -0.039 | 0.004 | -0.179 | — |
| chr5_141876052_T_A | chr5:141876052 | 0.101 | 0.061 | 0.118 | — |
| chr5_141852883_G_A | chr5:141852883 | 0.030 | 0.025 | 0.178 | — |
| chr5_141876039_G_A | chr5:141876039 | -0.093 | -0.044 | -0.176 | — |
| chr5_141876048_G_A | chr5:141876048 | -0.087 | 0.036 | -0.176 | — |
| chr5_141876084_G_T | chr5:141876084 | 0.078 | 0.047 | 0.176 | — |
| chr5_141852863_G_A | chr5:141852863 | 0.024 | 0.036 | 0.175 | — |
| chr5_141852871_G_T | chr5:141852871 | 0.034 | 0.036 | 0.174 | — |
| chr5_141876045_A_T | chr5:141876045 | 0.098 | 0.038 | 0.106 | — |
| chr5_141852875_G_T | chr5:141852875 | 0.039 | 0.030 | 0.171 | — |
| chr5_141876062_G_T | chr5:141876062 | 0.097 | 0.018 | 0.024 | — |
| chr5_141876067_C_T | chr5:141876067 | -0.097 | -0.036 | -0.088 | — |
| chr5_141876069_C_A | chr5:141876069 | -0.097 | -0.034 | -0.135 | — |
| chr5_141852872_G_C | chr5:141852872 | 0.033 | 0.032 | 0.169 | — |
| chr5_141852798_A_C | chr5:141852798 | -0.049 | 0.007 | -0.168 | — |
| chr5_141876073_A_T | chr5:141876073 | -0.093 | 0.001 | -0.106 | — |
| chr5_141876029_A_C | chr5:141876029 | -0.092 | -0.006 | 0.024 | — |
| chr5_141876081_A_C | chr5:141876081 | -0.092 | -0.010 | -0.053 | — |
| chr5_141852859_G_A | chr5:141852859 | 0.028 | 0.030 | 0.159 | — |
| chr5_141852883_G_C | chr5:141852883 | 0.031 | 0.022 | 0.159 | — |
| chr5_141876034_C_G | chr5:141876034 | 0.090 | 0.069 | 0.159 | — |
| chr5_141876081_A_G | chr5:141876081 | -0.068 | -0.028 | -0.159 | — |
| chr5_141852875_G_A | chr5:141852875 | 0.033 | 0.031 | 0.153 | — |
| chr5_141852884_C_G | chr5:141852884 | -0.024 | -0.018 | -0.153 | — |
| chr5_141852859_G_T | chr5:141852859 | 0.022 | 0.030 | 0.151 | — |
| chr5_141852863_G_C | chr5:141852863 | 0.025 | 0.022 | 0.147 | — |
| chr5_141852863_G_T | chr5:141852863 | 0.025 | 0.031 | 0.147 | — |
| chr5_141876054_G_C | chr5:141876054 | -0.083 | -0.079 | -0.082 | — |
| chr5_141876084_G_C | chr5:141876084 | 0.083 | 0.030 | 0.141 | — |
| chr5_141852796_C_G | chr5:141852796 | 0.012 | 0.004 | 0.144 | — |
| chr5_141852837_C_G | chr5:141852837 | -0.029 | -0.022 | -0.144 | — |
| chr5_141876051_T_A | chr5:141876051 | -0.082 | -0.060 | -0.041 | — |
| chr5_141876060_G_C | chr5:141876060 | 0.082 | -0.053 | -0.012 | — |
| chr5_141852857_C_A | chr5:141852857 | 0.027 | 0.038 | 0.143 | — |
| chr5_141852794_T_A | chr5:141852794 | -0.022 | -0.022 | -0.141 | — |
| chr5_141852870_G_C | chr5:141852870 | 0.023 | 0.021 | 0.141 | — |
| chr5_141852874_A_T | chr5:141852874 | -0.017 | -0.027 | -0.141 | — |
| chr5_141876040_T_G | chr5:141876040 | -0.080 | -0.022 | -0.082 | — |
| chr5_141876078_C_G | chr5:141876078 | -0.080 | -0.013 | -0.082 | — |
| chr5_141852883_G_T | chr5:141852883 | 0.032 | 0.029 | 0.137 | — |
| chr5_141852795_C_G | chr5:141852795 | 0.014 | 0.018 | 0.135 | — |
| chr5_141852870_G_A | chr5:141852870 | 0.024 | 0.030 | 0.135 | — |
| chr5_141852871_G_A | chr5:141852871 | 0.032 | 0.028 | 0.134 | — |
| chr5_141852872_G_A | chr5:141852872 | 0.027 | 0.033 | 0.129 | — |
| chr5_141852878_A_T | chr5:141852878 | -0.020 | -0.028 | -0.129 | — |
| chr5_141876038_A_T | chr5:141876038 | -0.073 | -0.016 | -0.065 | — |
| chr5_141876042_C_G | chr5:141876042 | 0.072 | 0.056 | 0.129 | — |
| chr5_141876054_G_A | chr5:141876054 | -0.065 | -0.056 | -0.129 | — |
| chr5_141876054_G_T | chr5:141876054 | -0.010 | -0.074 | -0.129 | — |
| chr5_141876058_G_C | chr5:141876058 | -0.057 | -0.034 | -0.129 | — |
| chr5_141852802_C_G | chr5:141852802 | 0.002 | 0.017 | 0.126 | — |
| chr5_141876069_C_G | chr5:141876069 | -0.072 | -0.019 | -0.082 | — |
| chr5_141876038_A_G | chr5:141876038 | -0.070 | -0.019 | -0.076 | — |
| chr5_141876049_C_G | chr5:141876049 | 0.070 | 0.030 | 0.018 | — |
| chr5_141876084_G_A | chr5:141876084 | 0.012 | 0.052 | 0.124 | — |
| chr5_141876085_C_A | chr5:141876085 | 0.070 | 0.030 | 0.059 | — |
| chr5_141876060_G_A | chr5:141876060 | 0.068 | -0.006 | 0.012 | — |
| chr5_141852891_C_G | chr5:141852891 | -0.017 | -0.018 | -0.118 | — |
| chr5_141876040_T_C | chr5:141876040 | -0.067 | -0.027 | -0.071 | — |
| chr5_141876049_C_A | chr5:141876049 | -0.067 | 0.011 | -0.094 | — |
| chr5_141876058_G_T | chr5:141876058 | -0.048 | -0.025 | -0.118 | — |
| chr5_141876061_G_C | chr5:141876061 | 0.000 | -0.024 | -0.118 | — |
| chr5_141876074_C_A | chr5:141876074 | -0.038 | 0.004 | -0.118 | — |
| chr5_141852859_G_C | chr5:141852859 | 0.020 | 0.020 | 0.116 | — |
| chr5_141852815_C_T | chr5:141852815 | -0.010 | -0.006 | -0.115 | — |
| chr5_141852800_C_G | chr5:141852800 | -0.008 | 0.005 | 0.112 | — |
| chr5_141876062_G_A | chr5:141876062 | 0.063 | -0.010 | -0.035 | — |
| chr5_141876047_C_A | chr5:141876047 | 0.062 | 0.029 | 0.082 | — |
| chr5_141876051_T_G | chr5:141876051 | -0.062 | -0.019 | 0.000 | — |
| chr5_141876083_C_G | chr5:141876083 | -0.062 | 0.023 | 0.012 | — |
| chr5_141876058_G_A | chr5:141876058 | 0.035 | 0.028 | -0.106 | — |
| chr5_141876070_A_G | chr5:141876070 | -0.060 | 0.011 | 0.029 | — |
Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.