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PLEKHN1
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near PLEKHN1
chr1:866,481..1,075,865, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr1_904299_G_A | chr1:904299 | 0.190 | 0.301 | 1.000 | 0.0013% |
| chr1_912972_G_A | chr1:912972 | 0.766 | 0.633 | 1.000 | <0.001% |
| chr1_904301_G_C | chr1:904301 | 0.204 | 0.260 | 1.000 | <0.001% |
| chr1_904707_A_C | chr1:904707 | -1.000 | -0.144 | -1.000 | 0.0028% |
| chr1_904307_G_A | chr1:904307 | 0.256 | 0.256 | 1.000 | 0.0028% |
| chr1_869922_C_T | chr1:869922 | -0.950 | -0.329 | -1.000 | 0.0020% |
| chr1_904306_G_T | chr1:904306 | 0.199 | 0.233 | 1.000 | <0.001% |
| chr1_912970_C_T | chr1:912970 | 0.627 | 0.561 | 1.000 | 0.0013% |
| chr1_921208_C_G | chr1:921208 | -0.621 | -0.372 | -1.000 | — |
| chr1_913018_G_C | chr1:913018 | 0.438 | 0.409 | 1.000 | 0.0013% |
| chr1_921194_C_G | chr1:921194 | 0.798 | 0.372 | 1.000 | — |
| chr1_904778_G_C | chr1:904778 | -0.788 | -0.054 | -1.000 | <0.001% |
| chr1_904694_G_A | chr1:904694 | 0.730 | 0.212 | 0.647 | 0.0021% |
| chr1_921199_C_T | chr1:921199 | -0.526 | -0.294 | -1.000 | — |
| chr1_921205_C_G | chr1:921205 | -0.537 | -0.329 | -1.000 | 0.0013% |
| chr1_906992_A_G | chr1:906992 | 0.104 | 0.249 | 1.000 | 0.0013% |
| chr1_921196_T_G | chr1:921196 | 0.696 | 0.430 | 0.935 | — |
| chr1_921203_G_A | chr1:921203 | 0.696 | 0.305 | 0.824 | 1.52% |
| chr1_921198_C_T | chr1:921198 | -0.473 | -0.296 | -1.000 | 0.0033% |
| chr1_921199_C_G | chr1:921199 | -0.519 | -0.315 | -1.000 | — |
| chr1_921235_G_C | chr1:921235 | -0.578 | -0.297 | -1.000 | — |
| chr1_921201_C_A | chr1:921201 | -0.463 | -0.289 | -1.000 | — |
| chr1_921206_G_A | chr1:921206 | -0.562 | -0.310 | -1.000 | 0.0026% |
| chr1_921207_G_T | chr1:921207 | -0.547 | -0.282 | -1.000 | — |
| chr1_904732_G_A | chr1:904732 | 0.654 | 0.135 | 0.653 | 0.0013% |
| chr1_921198_C_A | chr1:921198 | -0.456 | -0.272 | -1.000 | — |
| chr1_921207_G_A | chr1:921207 | -0.539 | -0.268 | -1.000 | — |
| chr1_921206_G_T | chr1:921206 | -0.516 | -0.315 | -1.000 | 0.0033% |
| chr1_921194_C_A | chr1:921194 | 0.631 | 0.301 | 0.841 | — |
| chr1_913005_T_C | chr1:913005 | 0.399 | 0.239 | 1.000 | 0.0013% |
| chr1_921197_C_A | chr1:921197 | -0.358 | -0.245 | -1.000 | <0.001% |
| chr1_921200_T_A | chr1:921200 | -0.462 | -0.303 | -1.000 | — |
| chr1_921202_T_A | chr1:921202 | -0.455 | -0.275 | -1.000 | <0.001% |
| chr1_921212_A_G | chr1:921212 | -0.400 | -0.236 | -1.000 | — |
| chr1_921197_C_T | chr1:921197 | -0.340 | -0.216 | -1.000 | — |
| chr1_921207_G_C | chr1:921207 | -0.532 | -0.277 | -1.000 | — |
| chr1_921198_C_G | chr1:921198 | -0.433 | -0.266 | -1.000 | — |
| chr1_921201_C_T | chr1:921201 | -0.453 | -0.263 | -1.000 | — |
| chr1_870017_C_T | chr1:870017 | 0.588 | 0.258 | 0.782 | <0.001% |
| chr1_921193_T_C | chr1:921193 | -0.399 | -0.216 | -1.000 | — |
| chr1_921202_T_G | chr1:921202 | -0.436 | -0.269 | -1.000 | — |
| chr1_921204_G_A | chr1:921204 | -0.426 | -0.274 | -1.000 | — |
| chr1_921205_C_A | chr1:921205 | -0.422 | -0.269 | -0.971 | — |
| chr1_921199_C_A | chr1:921199 | -0.382 | -0.242 | -0.965 | — |
| chr1_904780_G_A | chr1:904780 | -0.542 | -0.036 | -0.588 | 0.0026% |
| chr1_906914_C_T | chr1:906914 | -0.223 | -0.114 | -0.953 | 0.0013% |
| chr1_921201_C_G | chr1:921201 | -0.392 | -0.239 | -0.941 | — |
| chr1_921200_T_G | chr1:921200 | -0.410 | -0.260 | -0.929 | — |
| chr1_904309_G_C | chr1:904309 | 0.105 | 0.110 | 0.912 | <0.001% |
| chr1_921202_T_C | chr1:921202 | -0.365 | -0.237 | -0.853 | <0.001% |
| chr1_921203_G_C | chr1:921203 | -0.456 | -0.227 | -0.829 | — |
| chr1_921219_C_G | chr1:921219 | -0.431 | -0.193 | -0.818 | — |
| chr1_869776_C_G | chr1:869776 | 0.275 | 0.128 | 0.809 | <0.001% |
| chr1_921232_C_G | chr1:921232 | 0.448 | 0.194 | 0.576 | — |
| chr1_870113_G_A | chr1:870113 | 0.338 | 0.501 | 0.785 | <0.001% |
| chr1_870019_C_A | chr1:870019 | 0.440 | 0.237 | 0.688 | <0.001% |
| chr1_921196_T_C | chr1:921196 | -0.282 | -0.195 | -0.776 | — |
| chr1_869777_C_A | chr1:869777 | 0.191 | 0.107 | 0.753 | <0.001% |
| chr1_921197_C_G | chr1:921197 | -0.254 | -0.181 | -0.747 | — |
| chr1_921204_G_T | chr1:921204 | -0.312 | -0.192 | -0.735 | — |
| chr1_913039_G_T | chr1:913039 | -0.119 | -0.170 | -0.718 | <0.001% |
| chr1_870069_C_A | chr1:870069 | 0.239 | 0.212 | 0.712 | <0.001% |
| chr1_904721_C_T | chr1:904721 | 0.316 | 0.078 | 0.706 | <0.001% |
| chr1_906982_C_T | chr1:906982 | -0.121 | -0.034 | -0.706 | 22.9% |
| chr1_913034_G_A | chr1:913034 | -0.116 | -0.159 | -0.700 | <0.001% |
| chr1_904836_C_T | chr1:904836 | 0.394 | 0.066 | 0.418 | 0.0013% |
| chr1_904808_C_T | chr1:904808 | 0.393 | 0.037 | 0.382 | 0.0013% |
| chr1_904845_C_A | chr1:904845 | 0.393 | 0.048 | 0.003 | <0.001% |
| chr1_921203_G_T | chr1:921203 | -0.337 | -0.178 | -0.694 | — |
| chr1_870020_C_G | chr1:870020 | 0.388 | 0.179 | 0.447 | 0.0026% |
| chr1_921208_C_A | chr1:921208 | -0.304 | -0.181 | -0.665 | — |
| chr1_904450_C_A | chr1:904450 | 0.131 | 0.076 | 0.653 | <0.001% |
| chr1_921235_G_T | chr1:921235 | -0.361 | -0.181 | -0.653 | — |
| chr1_921206_G_C | chr1:921206 | -0.331 | -0.198 | -0.629 | — |
| chr1_869895_C_A | chr1:869895 | -0.354 | 0.145 | -0.441 | <0.001% |
| chr1_869774_C_A | chr1:869774 | 0.223 | 0.103 | 0.618 | <0.001% |
| chr1_904787_C_A | chr1:904787 | 0.345 | 0.043 | 0.485 | 0.0013% |
| chr1_904429_C_T | chr1:904429 | 0.148 | 0.061 | 0.606 | <0.001% |
| chr1_869777_C_T | chr1:869777 | 0.166 | 0.112 | 0.600 | <0.001% |
| chr1_906997_T_G | chr1:906997 | 0.098 | 0.165 | 0.600 | 0.0013% |
| chr1_921220_T_C | chr1:921220 | -0.232 | -0.140 | -0.600 | — |
| chr1_912976_A_G | chr1:912976 | -0.144 | -0.104 | -0.588 | <0.001% |
| chr1_921172_G_C | chr1:921172 | -0.231 | -0.124 | -0.576 | — |
| chr1_869958_C_G | chr1:869958 | -0.324 | -0.014 | -0.294 | 0.0085% |
| chr1_911378_G_C | chr1:911378 | -0.208 | -0.053 | -0.571 | <0.001% |
| chr1_904695_T_C | chr1:904695 | -0.275 | -0.061 | -0.568 | 0.167% |
| chr1_921209_G_T | chr1:921209 | -0.250 | -0.156 | -0.565 | 0.0013% |
| chr1_904787_C_G | chr1:904787 | 0.317 | 0.010 | 0.297 | <0.001% |
| chr1_921221_C_G | chr1:921221 | 0.317 | 0.211 | 0.553 | — |
| chr1_904817_A_T | chr1:904817 | -0.314 | 0.015 | -0.147 | <0.001% |
| chr1_912977_C_T | chr1:912977 | -0.148 | -0.086 | -0.541 | 0.0013% |
| chr1_921149_G_A | chr1:921149 | 0.197 | 0.043 | 0.541 | <0.001% |
| chr1_904514_G_A | chr1:904514 | 0.305 | 0.109 | 0.159 | <0.001% |
| chr1_904724_C_T | chr1:904724 | 0.280 | 0.084 | 0.529 | <0.001% |
| chr1_906924_A_T | chr1:906924 | -0.081 | -0.098 | -0.529 | <0.001% |
| chr1_869757_C_G | chr1:869757 | 0.141 | 0.104 | 0.518 | <0.001% |
| chr1_921210_G_T | chr1:921210 | -0.226 | -0.159 | -0.518 | — |
| chr1_904744_G_C | chr1:904744 | -0.285 | -0.035 | -0.324 | <0.001% |
| chr1_906797_T_C | chr1:906797 | 0.035 | 0.049 | 0.500 | <0.001% |
| chr1_921196_T_A | chr1:921196 | -0.204 | -0.124 | -0.500 | 0.0020% |
| chr1_921208_C_T | chr1:921208 | -0.237 | -0.119 | -0.500 | 0.0013% |
| chr1_919793_G_T | chr1:919793 | -0.148 | -0.107 | -0.494 | <0.001% |
| chr1_921195_C_A | chr1:921195 | 0.098 | -0.004 | 0.482 | — |
| chr1_869793_C_G | chr1:869793 | 0.135 | 0.085 | 0.476 | 0.0066% |
| chr1_870150_A_G | chr1:870150 | -0.158 | -0.085 | -0.476 | 0.033% |
| chr1_921210_G_C | chr1:921210 | -0.212 | -0.143 | -0.476 | — |
| chr1_921195_C_T | chr1:921195 | -0.208 | -0.122 | -0.471 | — |
| chr1_869933_G_A | chr1:869933 | -0.265 | -0.052 | -0.047 | <0.001% |
| chr1_904451_C_G | chr1:904451 | 0.091 | 0.050 | 0.459 | 0.0020% |
| chr1_904837_G_C | chr1:904837 | 0.174 | 0.057 | 0.459 | 0.0026% |
| chr1_904784_C_T | chr1:904784 | -0.258 | -0.001 | -0.059 | <0.001% |
| chr1_869967_T_C | chr1:869967 | 0.150 | 0.171 | 0.453 | <0.001% |
| chr1_869983_C_A | chr1:869983 | 0.162 | -0.038 | 0.453 | <0.001% |
| chr1_870051_G_A | chr1:870051 | 0.146 | 0.109 | 0.453 | 0.0020% |
| chr1_921233_C_A | chr1:921233 | -0.252 | -0.121 | -0.453 | — |
| chr1_869855_A_G | chr1:869855 | 0.255 | 0.052 | 0.359 | <0.001% |
| chr1_904743_C_T | chr1:904743 | -0.255 | -0.049 | -0.324 | <0.001% |
| chr1_921221_C_A | chr1:921221 | 0.254 | 0.187 | 0.447 | — |
| chr1_904700_G_T | chr1:904700 | -0.252 | -0.013 | -0.047 | 0.150% |
| chr1_904861_G_C | chr1:904861 | 0.249 | -0.001 | 0.135 | <0.001% |
| chr1_921215_C_T | chr1:921215 | -0.153 | -0.091 | -0.435 | — |
| chr1_911333_T_C | chr1:911333 | -0.097 | -0.003 | -0.429 | <0.001% |
| chr1_919799_G_A | chr1:919799 | -0.141 | -0.108 | -0.429 | 0.0013% |
| chr1_904810_C_A | chr1:904810 | 0.240 | 0.026 | 0.176 | <0.001% |
| chr1_912945_T_A | chr1:912945 | 0.089 | 0.089 | 0.418 | 0.0046% |
| chr1_870057_G_T | chr1:870057 | 0.027 | 0.052 | 0.412 | <0.001% |
| chr1_906954_C_T | chr1:906954 | -0.062 | -0.077 | -0.412 | 0.0013% |
| chr1_906969_C_G | chr1:906969 | 0.041 | 0.094 | 0.412 | <0.001% |
| chr1_912877_G_A | chr1:912877 | 0.052 | -0.015 | -0.412 | 0.0020% |
| chr1_921216_A_T | chr1:921216 | -0.194 | -0.107 | -0.412 | <0.001% |
| chr1_912971_C_T | chr1:912971 | -0.104 | -0.067 | -0.406 | 0.0013% |
| chr1_921213_G_T | chr1:921213 | -0.181 | -0.113 | -0.406 | — |
| chr1_904636_C_T | chr1:904636 | 0.087 | 0.011 | 0.400 | 0.0022% |
| chr1_904830_C_T | chr1:904830 | -0.223 | -0.005 | 0.200 | 0.025% |
| chr1_921234_A_C | chr1:921234 | -0.176 | -0.104 | -0.394 | — |
| chr1_904737_C_G | chr1:904737 | -0.222 | -0.020 | -0.106 | 0.0026% |
| chr1_904703_T_C | chr1:904703 | -0.173 | -0.030 | -0.391 | <0.001% |
| chr1_904801_G_A | chr1:904801 | 0.123 | 0.056 | 0.391 | <0.001% |
| chr1_870013_A_G | chr1:870013 | -0.219 | -0.135 | -0.388 | 0.041% |
| chr1_904725_T_C | chr1:904725 | -0.126 | -0.035 | -0.388 | <0.001% |
| chr1_906891_T_A | chr1:906891 | -0.071 | -0.066 | -0.388 | 0.0013% |
| chr1_921236_C_A | chr1:921236 | -0.176 | -0.075 | -0.388 | — |
| chr1_904847_T_C | chr1:904847 | 0.192 | -0.015 | -0.376 | <0.001% |
| chr1_904458_C_T | chr1:904458 | 0.015 | 0.048 | 0.371 | <0.001% |
| chr1_904517_G_A | chr1:904517 | 0.032 | 0.034 | 0.371 | 0.0066% |
| chr1_904837_G_A | chr1:904837 | 0.206 | 0.031 | 0.371 | 0.0026% |
| chr1_921124_C_G | chr1:921124 | 0.210 | 0.132 | 0.235 | <0.001% |
| chr1_870058_G_A | chr1:870058 | 0.011 | 0.061 | 0.365 | 0.0013% |
| chr1_921204_G_C | chr1:921204 | -0.160 | -0.109 | -0.365 | — |
| chr1_921230_G_C | chr1:921230 | -0.151 | -0.052 | -0.365 | — |
| chr1_870067_C_T | chr1:870067 | 0.053 | 0.069 | 0.359 | 0.028% |
| chr1_904425_C_T | chr1:904425 | 0.048 | 0.050 | 0.359 | 0.0020% |
| chr1_870002_C_G | chr1:870002 | -0.201 | 0.028 | -0.312 | <0.001% |
| chr1_904728_G_T | chr1:904728 | 0.161 | 0.050 | 0.353 | 0.0033% |
| chr1_904787_C_T | chr1:904787 | 0.177 | 0.032 | 0.347 | 0.0013% |
| chr1_904804_G_C | chr1:904804 | -0.196 | 0.020 | -0.088 | <0.001% |
| chr1_921190_A_C | chr1:921190 | -0.195 | -0.121 | -0.282 | — |
| chr1_921200_T_C | chr1:921200 | 0.195 | 0.152 | 0.329 | — |
| chr1_911415_A_G | chr1:911415 | 0.194 | 0.015 | 0.147 | 0.013% |
| chr1_869793_C_T | chr1:869793 | 0.116 | 0.066 | 0.341 | <0.001% |
| chr1_904717_C_T | chr1:904717 | 0.051 | 0.053 | 0.341 | <0.001% |
| chr1_921188_T_A | chr1:921188 | -0.141 | -0.160 | -0.341 | — |
| chr1_870022_A_G | chr1:870022 | 0.029 | -0.072 | -0.335 | <0.001% |
| chr1_921191_C_A | chr1:921191 | 0.190 | 0.058 | 0.288 | — |
| chr1_904699_C_A | chr1:904699 | -0.186 | 0.009 | 0.212 | <0.001% |
| chr1_906870_A_G | chr1:906870 | -0.089 | -0.049 | -0.329 | 1.69% |
| chr1_906996_G_A | chr1:906996 | -0.071 | -0.071 | -0.329 | <0.001% |
| chr1_921185_T_C | chr1:921185 | 0.186 | 0.091 | 0.053 | — |
| chr1_921215_C_G | chr1:921215 | -0.157 | -0.063 | -0.329 | — |
| chr1_904859_C_G | chr1:904859 | -0.185 | 0.009 | -0.115 | 0.0039% |
| chr1_921190_A_G | chr1:921190 | -0.184 | -0.154 | -0.276 | — |
| chr1_904422_C_T | chr1:904422 | 0.046 | 0.038 | 0.324 | 0.0013% |
| chr1_904452_C_A | chr1:904452 | 0.011 | 0.054 | 0.324 | <0.001% |
| chr1_904505_C_G | chr1:904505 | 0.106 | 0.014 | 0.324 | <0.001% |
| chr1_904474_C_T | chr1:904474 | -0.181 | -0.002 | -0.218 | 0.0013% |
| chr1_869835_G_C | chr1:869835 | -0.052 | -0.024 | -0.318 | 0.0020% |
| chr1_904121_C_G | chr1:904121 | -0.040 | -0.052 | -0.318 | <0.001% |
| chr1_904478_C_T | chr1:904478 | 0.044 | 0.016 | 0.318 | 0.0014% |
| chr1_906981_C_T | chr1:906981 | -0.004 | -0.027 | -0.318 | <0.001% |
| chr1_921215_C_A | chr1:921215 | -0.149 | -0.052 | -0.318 | — |
| chr1_870119_G_A | chr1:870119 | 0.051 | 0.195 | 0.315 | 0.0020% |
| chr1_869905_G_T | chr1:869905 | 0.083 | 0.030 | 0.312 | 0.0013% |
| chr1_869951_A_G | chr1:869951 | -0.176 | -0.055 | -0.247 | 0.012% |
| chr1_912873_C_G | chr1:912873 | 0.062 | -0.033 | -0.312 | <0.001% |
| chr1_921194_C_T | chr1:921194 | 0.176 | 0.096 | 0.247 | — |
| chr1_870042_C_A | chr1:870042 | 0.065 | 0.016 | 0.306 | <0.001% |
| chr1_919771_C_G | chr1:919771 | 0.158 | 0.105 | 0.306 | 0.0013% |
| chr1_921184_T_A | chr1:921184 | 0.110 | 0.062 | 0.306 | — |
| chr1_921224_G_T | chr1:921224 | -0.120 | -0.047 | -0.306 | — |
| chr1_904516_G_T | chr1:904516 | 0.171 | 0.031 | 0.153 | 0.0010% |
| chr1_904785_C_G | chr1:904785 | 0.169 | 0.033 | 0.135 | <0.001% |
| chr1_870089_G_C | chr1:870089 | 0.168 | 0.090 | 0.141 | <0.001% |
| chr1_870110_G_A | chr1:870110 | 0.114 | -0.001 | 0.297 | 0.0013% |
| chr1_904620_C_T | chr1:904620 | 0.157 | 0.016 | 0.294 | 0.0021% |
| chr1_906999_C_T | chr1:906999 | -0.038 | -0.038 | -0.294 | <0.001% |
| chr1_919792_A_T | chr1:919792 | -0.091 | -0.074 | -0.294 | 0.0053% |
| chr1_921189_G_C | chr1:921189 | -0.095 | -0.102 | -0.294 | — |
| chr1_921212_A_T | chr1:921212 | -0.107 | -0.027 | -0.294 | — |
| chr1_904511_A_T | chr1:904511 | 0.165 | 0.022 | 0.247 | 0.0010% |
| chr1_869931_G_A | chr1:869931 | -0.165 | -0.129 | 0.147 | 0.0020% |
Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.