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SCARF1
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near SCARF1
chr17:1,533,857..1,745,732, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr17_1546214_C_T | chr17:1546214 | 0.259 | -0.160 | 0.476 | — |
| chr17_1534434_C_G | chr17:1534434 | 0.122 | 0.190 | 0.324 | — |
| chr17_1534413_G_T | chr17:1534413 | 0.092 | 0.190 | 0.294 | — |
| chr17_1546231_G_A | chr17:1546231 | 0.145 | -0.272 | 0.053 | — |
| chr17_1546254_C_G | chr17:1546254 | 0.077 | 0.069 | 0.206 | — |
| chr17_1546262_T_G | chr17:1546262 | 0.107 | 0.079 | 0.135 | — |
| chr17_1546196_T_G | chr17:1546196 | 0.031 | -0.025 | 0.182 | — |
| chr17_1534434_C_A | chr17:1534434 | 0.053 | 0.089 | 0.176 | — |
| chr17_1534434_C_T | chr17:1534434 | 0.044 | 0.076 | 0.165 | — |
| chr17_1546254_C_A | chr17:1546254 | 0.072 | 0.091 | 0.165 | — |
| chr17_1546294_G_C | chr17:1546294 | 0.092 | 0.129 | 0.118 | — |
| chr17_1546294_G_T | chr17:1546294 | 0.087 | 0.140 | 0.065 | — |
| chr17_1546191_A_C | chr17:1546191 | 0.034 | -0.005 | 0.153 | — |
| chr17_1546307_C_A | chr17:1546307 | -0.070 | -0.109 | -0.153 | — |
| chr17_1546250_G_T | chr17:1546250 | 0.085 | 0.069 | 0.141 | — |
| chr17_1546200_A_C | chr17:1546200 | 0.072 | 0.023 | 0.147 | — |
| chr17_1546253_T_G | chr17:1546253 | 0.051 | 0.025 | 0.147 | — |
| chr17_1546294_G_A | chr17:1546294 | 0.082 | 0.157 | 0.065 | — |
| chr17_1546292_A_T | chr17:1546292 | 0.081 | 0.160 | 0.082 | — |
| chr17_1546193_T_G | chr17:1546193 | 0.034 | 0.000 | 0.141 | — |
| chr17_1534432_C_G | chr17:1534432 | 0.019 | 0.071 | 0.135 | — |
| chr17_1546193_T_C | chr17:1546193 | 0.026 | 0.005 | 0.135 | — |
| chr17_1546251_C_A | chr17:1546251 | 0.064 | 0.107 | 0.135 | — |
| chr17_1546251_C_G | chr17:1546251 | 0.066 | 0.102 | 0.135 | — |
| chr17_1546251_C_T | chr17:1546251 | 0.073 | 0.124 | 0.135 | <0.001% |
| chr17_1546303_A_G | chr17:1546303 | -0.038 | -0.015 | -0.135 | — |
| chr17_1546198_G_A | chr17:1546198 | 0.076 | 0.048 | 0.059 | — |
| chr17_1546292_A_C | chr17:1546292 | 0.075 | 0.132 | 0.112 | — |
| chr17_1534410_T_C | chr17:1534410 | 0.025 | 0.058 | 0.129 | — |
| chr17_1546196_T_C | chr17:1546196 | 0.035 | 0.028 | 0.129 | — |
| chr17_1546268_A_G | chr17:1546268 | -0.073 | -0.096 | -0.076 | — |
| chr17_1546195_C_A | chr17:1546195 | 0.071 | 0.033 | 0.106 | — |
| chr17_1546250_G_A | chr17:1546250 | 0.070 | 0.109 | 0.082 | — |
| chr17_1546252_A_G | chr17:1546252 | 0.035 | 0.018 | 0.124 | 0.0013% |
| chr17_1546253_T_A | chr17:1546253 | 0.054 | 0.066 | 0.124 | — |
| chr17_1546272_T_G | chr17:1546272 | 0.019 | 0.013 | 0.124 | — |
| chr17_1546277_T_G | chr17:1546277 | 0.049 | 0.043 | 0.124 | — |
| chr17_1546300_G_A | chr17:1546300 | -0.068 | -0.112 | -0.076 | <0.001% |
| chr17_1534410_T_A | chr17:1534410 | 0.025 | 0.074 | 0.118 | — |
| chr17_1534433_C_T | chr17:1534433 | 0.022 | 0.048 | 0.118 | — |
| chr17_1546197_A_C | chr17:1546197 | 0.004 | -0.051 | 0.118 | — |
| chr17_1546252_A_T | chr17:1546252 | 0.052 | 0.079 | 0.118 | — |
| chr17_1546291_T_A | chr17:1546291 | 0.065 | 0.107 | 0.094 | — |
| chr17_1546198_G_T | chr17:1546198 | 0.064 | 0.028 | 0.076 | — |
| chr17_1546300_G_T | chr17:1546300 | -0.064 | -0.094 | -0.029 | — |
| chr17_1546196_T_A | chr17:1546196 | 0.031 | 0.003 | 0.112 | — |
| chr17_1546216_A_C | chr17:1546216 | -0.017 | -0.023 | -0.112 | — |
| chr17_1546214_C_G | chr17:1546214 | 0.062 | 0.020 | 0.065 | — |
| chr17_1534366_A_C | chr17:1534366 | 0.012 | 0.028 | 0.106 | — |
| chr17_1534433_C_A | chr17:1534433 | 0.021 | 0.046 | 0.106 | — |
| chr17_1534466_G_A | chr17:1534466 | -0.006 | -0.008 | -0.106 | — |
| chr17_1546198_G_C | chr17:1546198 | 0.050 | 0.000 | 0.106 | — |
| chr17_1546219_G_T | chr17:1546219 | -0.016 | -0.030 | -0.106 | — |
| chr17_1546250_G_C | chr17:1546250 | 0.059 | 0.076 | 0.094 | — |
| chr17_1546283_C_G | chr17:1546283 | -0.059 | -0.096 | -0.053 | — |
| chr17_1546248_G_T | chr17:1546248 | -0.057 | -0.013 | -0.071 | — |
| chr17_1534366_A_G | chr17:1534366 | 0.014 | 0.030 | 0.100 | — |
| chr17_1534383_G_T | chr17:1534383 | -0.025 | -0.038 | -0.100 | — |
| chr17_1534411_A_C | chr17:1534411 | 0.013 | 0.043 | 0.100 | — |
| chr17_1534432_C_T | chr17:1534432 | 0.021 | 0.038 | 0.100 | — |
| chr17_1534433_C_G | chr17:1534433 | 0.014 | 0.043 | 0.100 | — |
| chr17_1546208_C_G | chr17:1546208 | -0.020 | -0.081 | -0.100 | — |
| chr17_1546295_G_C | chr17:1546295 | 0.042 | 0.081 | 0.100 | — |
| chr17_1546262_T_A | chr17:1546262 | 0.056 | 0.063 | 0.065 | — |
| chr17_1534394_T_C | chr17:1534394 | 0.024 | 0.043 | 0.094 | — |
| chr17_1534411_A_T | chr17:1534411 | 0.013 | 0.043 | 0.094 | — |
| chr17_1534436_C_A | chr17:1534436 | 0.012 | 0.038 | 0.094 | — |
| chr17_1534466_G_T | chr17:1534466 | -0.007 | -0.013 | -0.094 | — |
| chr17_1546191_A_T | chr17:1546191 | 0.034 | -0.003 | 0.094 | — |
| chr17_1546200_A_G | chr17:1546200 | 0.044 | 0.025 | 0.094 | 0.0026% |
| chr17_1546208_C_T | chr17:1546208 | -0.012 | -0.005 | -0.094 | — |
| chr17_1546212_A_C | chr17:1546212 | 0.022 | -0.015 | 0.094 | — |
| chr17_1546216_A_G | chr17:1546216 | 0.022 | -0.015 | 0.094 | — |
| chr17_1546267_G_C | chr17:1546267 | 0.053 | 0.074 | 0.047 | — |
| chr17_1546296_A_G | chr17:1546296 | 0.044 | 0.081 | 0.094 | <0.001% |
| chr17_1546290_T_A | chr17:1546290 | 0.052 | 0.074 | 0.053 | — |
| chr17_1546200_A_T | chr17:1546200 | 0.051 | 0.015 | 0.088 | — |
| chr17_1546252_A_C | chr17:1546252 | 0.050 | 0.018 | 0.088 | — |
| chr17_1534362_C_A | chr17:1534362 | -0.019 | -0.038 | -0.088 | — |
| chr17_1534466_G_C | chr17:1534466 | -0.009 | -0.010 | -0.088 | — |
| chr17_1546246_C_G | chr17:1546246 | 0.027 | 0.091 | 0.088 | — |
| chr17_1546254_C_T | chr17:1546254 | 0.036 | 0.046 | 0.088 | — |
| chr17_1546278_C_G | chr17:1546278 | 0.031 | 0.020 | 0.088 | — |
| chr17_1546290_T_G | chr17:1546290 | 0.022 | 0.043 | 0.088 | — |
| chr17_1546293_A_C | chr17:1546293 | 0.030 | 0.079 | 0.088 | — |
| chr17_1546246_C_A | chr17:1546246 | 0.047 | 0.096 | 0.082 | — |
| chr17_1534379_C_A | chr17:1534379 | -0.014 | -0.028 | -0.082 | — |
| chr17_1534430_A_G | chr17:1534430 | -0.012 | 0.000 | -0.082 | — |
| chr17_1534435_C_A | chr17:1534435 | 0.012 | 0.028 | 0.082 | — |
| chr17_1534435_C_T | chr17:1534435 | 0.012 | 0.023 | 0.082 | — |
| chr17_1534465_G_C | chr17:1534465 | -0.006 | -0.003 | -0.082 | — |
| chr17_1534470_T_C | chr17:1534470 | -0.006 | -0.008 | -0.082 | — |
| chr17_1546193_T_A | chr17:1546193 | 0.030 | 0.003 | 0.082 | — |
| chr17_1546205_A_C | chr17:1546205 | 0.034 | -0.010 | 0.082 | — |
| chr17_1546226_A_C | chr17:1546226 | -0.029 | -0.066 | -0.082 | — |
| chr17_1546296_A_C | chr17:1546296 | -0.008 | -0.023 | 0.082 | — |
| chr17_1546306_G_C | chr17:1546306 | -0.047 | -0.051 | -0.024 | — |
| chr17_1546307_C_G | chr17:1546307 | -0.031 | -0.033 | -0.082 | — |
| chr17_1546310_T_C | chr17:1546310 | -0.046 | -0.053 | -0.012 | — |
| chr17_1546312_C_T | chr17:1546312 | 0.046 | 0.091 | 0.012 | — |
| chr17_1534334_G_T | chr17:1534334 | -0.005 | -0.018 | -0.076 | <0.001% |
| chr17_1534345_A_C | chr17:1534345 | 0.012 | 0.030 | 0.076 | — |
| chr17_1534396_A_C | chr17:1534396 | 0.007 | 0.015 | 0.076 | — |
| chr17_1534410_T_G | chr17:1534410 | 0.009 | 0.033 | 0.076 | — |
| chr17_1534473_G_C | chr17:1534473 | -0.010 | -0.008 | -0.076 | — |
| chr17_1534504_A_C | chr17:1534504 | -0.002 | 0.000 | 0.076 | — |
| chr17_1546201_T_C | chr17:1546201 | 0.025 | 0.000 | 0.076 | — |
| chr17_1546202_T_C | chr17:1546202 | 0.018 | -0.033 | 0.076 | — |
| chr17_1546204_C_G | chr17:1546204 | 0.038 | 0.010 | 0.076 | — |
| chr17_1546209_A_C | chr17:1546209 | 0.018 | -0.003 | 0.076 | — |
| chr17_1546266_A_C | chr17:1546266 | 0.021 | 0.053 | 0.076 | — |
| chr17_1546268_A_C | chr17:1546268 | -0.043 | -0.048 | -0.041 | — |
| chr17_1546277_T_A | chr17:1546277 | 0.037 | 0.028 | 0.076 | — |
| chr17_1546280_A_T | chr17:1546280 | -0.004 | -0.043 | 0.076 | — |
| chr17_1546288_G_A | chr17:1546288 | -0.011 | -0.015 | -0.076 | — |
| chr17_1546308_T_G | chr17:1546308 | -0.023 | -0.033 | -0.076 | — |
| chr17_1546313_T_G | chr17:1546313 | 0.015 | 0.036 | 0.076 | — |
| chr17_1546194_G_C | chr17:1546194 | 0.042 | -0.005 | 0.053 | — |
| chr17_1546225_G_C | chr17:1546225 | -0.028 | -0.129 | -0.024 | — |
| chr17_1546267_G_A | chr17:1546267 | 0.042 | 0.081 | -0.006 | <0.001% |
| chr17_1546303_A_C | chr17:1546303 | -0.042 | -0.058 | -0.035 | — |
| chr17_1546303_A_T | chr17:1546303 | -0.042 | -0.066 | -0.065 | — |
| chr17_1546308_T_C | chr17:1546308 | -0.042 | -0.048 | -0.018 | — |
| chr17_1546247_T_C | chr17:1546247 | -0.042 | -0.056 | -0.035 | — |
| chr17_1546246_C_T | chr17:1546246 | 0.021 | 0.127 | 0.035 | — |
| chr17_1546243_C_T | chr17:1546243 | 0.041 | 0.109 | 0.035 | — |
| chr17_1546267_G_T | chr17:1546267 | 0.041 | 0.086 | 0.012 | — |
| chr17_1546302_G_A | chr17:1546302 | -0.041 | -0.043 | -0.053 | 0.0026% |
| chr17_1546247_T_G | chr17:1546247 | -0.040 | -0.048 | -0.029 | — |
| chr17_1546248_G_C | chr17:1546248 | -0.040 | -0.010 | -0.059 | — |
| chr17_1534343_G_A | chr17:1534343 | -0.004 | -0.013 | -0.071 | — |
| chr17_1534362_C_T | chr17:1534362 | -0.017 | -0.033 | -0.071 | — |
| chr17_1534370_G_C | chr17:1534370 | -0.016 | -0.030 | -0.071 | — |
| chr17_1534386_C_T | chr17:1534386 | -0.007 | -0.018 | -0.071 | — |
| chr17_1534440_A_C | chr17:1534440 | 0.011 | 0.010 | 0.071 | 0.0013% |
| chr17_1534442_A_G | chr17:1534442 | 0.003 | 0.015 | 0.071 | — |
| chr17_1534448_A_C | chr17:1534448 | 0.007 | 0.008 | 0.071 | — |
| chr17_1534465_G_T | chr17:1534465 | -0.007 | 0.000 | -0.071 | — |
| chr17_1534496_A_T | chr17:1534496 | -0.019 | 0.010 | 0.071 | — |
| chr17_1534513_G_A | chr17:1534513 | 0.003 | -0.003 | -0.071 | — |
| chr17_1546192_G_C | chr17:1546192 | 0.022 | 0.005 | 0.071 | — |
| chr17_1546199_G_C | chr17:1546199 | 0.026 | -0.003 | 0.071 | — |
| chr17_1546213_G_C | chr17:1546213 | -0.004 | -0.023 | -0.071 | — |
| chr17_1546221_G_A | chr17:1546221 | 0.002 | -0.010 | -0.071 | — |
| chr17_1546235_T_A | chr17:1546235 | -0.012 | -0.015 | 0.071 | — |
| chr17_1546238_A_C | chr17:1546238 | 0.020 | 0.028 | 0.071 | — |
| chr17_1546245_T_A | chr17:1546245 | 0.030 | 0.076 | 0.071 | — |
| chr17_1546245_T_G | chr17:1546245 | 0.007 | 0.010 | 0.071 | — |
| chr17_1546249_T_C | chr17:1546249 | -0.040 | -0.084 | -0.059 | — |
| chr17_1546255_C_G | chr17:1546255 | 0.012 | 0.005 | 0.071 | — |
| chr17_1546302_G_T | chr17:1546302 | -0.037 | -0.051 | -0.071 | — |
| chr17_1546315_C_A | chr17:1546315 | -0.023 | -0.046 | -0.071 | — |
| chr17_1546243_C_A | chr17:1546243 | 0.039 | 0.114 | 0.041 | — |
| chr17_1546312_C_A | chr17:1546312 | 0.039 | 0.099 | 0.065 | — |
| chr17_1546206_G_C | chr17:1546206 | 0.038 | -0.043 | 0.047 | — |
| chr17_1546276_T_A | chr17:1546276 | 0.038 | 0.025 | 0.029 | — |
| chr17_1546217_C_G | chr17:1546217 | 0.037 | 0.030 | 0.065 | 0.0013% |
| chr17_1546280_A_G | chr17:1546280 | -0.037 | -0.089 | 0.000 | <0.001% |
| chr17_1546304_G_T | chr17:1546304 | -0.037 | -0.043 | -0.059 | — |
| chr17_1546314_T_A | chr17:1546314 | 0.037 | 0.046 | 0.035 | — |
| chr17_1546263_C_A | chr17:1546263 | 0.037 | 0.058 | 0.035 | — |
| chr17_1534328_C_G | chr17:1534328 | -0.004 | -0.010 | -0.065 | — |
| chr17_1534340_G_A | chr17:1534340 | 0.000 | -0.015 | -0.065 | — |
| chr17_1534377_G_T | chr17:1534377 | -0.007 | -0.020 | -0.065 | — |
| chr17_1534385_C_T | chr17:1534385 | -0.008 | -0.013 | -0.065 | — |
| chr17_1534386_C_A | chr17:1534386 | -0.007 | -0.013 | -0.065 | — |
| chr17_1534386_C_G | chr17:1534386 | -0.007 | -0.018 | -0.065 | — |
| chr17_1534435_C_G | chr17:1534435 | 0.014 | 0.028 | 0.065 | — |
| chr17_1534436_C_G | chr17:1534436 | 0.009 | 0.020 | 0.065 | — |
| chr17_1534438_A_C | chr17:1534438 | 0.015 | 0.018 | 0.065 | — |
| chr17_1534454_A_G | chr17:1534454 | 0.002 | -0.003 | 0.065 | — |
| chr17_1534467_C_A | chr17:1534467 | -0.002 | -0.003 | -0.065 | — |
| chr17_1534505_A_G | chr17:1534505 | 0.002 | 0.000 | 0.065 | — |
| chr17_1546213_G_T | chr17:1546213 | 0.009 | -0.008 | -0.065 | — |
| chr17_1546218_C_A | chr17:1546218 | 0.037 | 0.046 | 0.000 | — |
| chr17_1546220_T_C | chr17:1546220 | 0.005 | -0.071 | 0.065 | — |
| chr17_1546234_T_G | chr17:1546234 | -0.002 | 0.003 | 0.065 | — |
| chr17_1546242_A_C | chr17:1546242 | 0.024 | 0.033 | 0.065 | — |
| chr17_1546278_C_A | chr17:1546278 | 0.034 | 0.038 | 0.065 | — |
| chr17_1546288_G_T | chr17:1546288 | -0.020 | -0.028 | -0.065 | — |
| chr17_1546292_A_G | chr17:1546292 | 0.024 | 0.030 | 0.065 | — |
| chr17_1546293_A_G | chr17:1546293 | 0.037 | 0.076 | 0.053 | — |
| chr17_1546316_A_C | chr17:1546316 | -0.037 | -0.018 | 0.029 | — |
| chr17_1546230_T_C | chr17:1546230 | -0.036 | -0.043 | -0.024 | — |
| chr17_1546253_T_C | chr17:1546253 | 0.035 | 0.046 | 0.047 | — |
| chr17_1546260_T_G | chr17:1546260 | 0.035 | 0.000 | 0.047 | — |
| chr17_1546304_G_C | chr17:1546304 | -0.035 | -0.048 | -0.024 | — |
| chr17_1546223_C_G | chr17:1546223 | -0.035 | -0.061 | -0.018 | — |
| chr17_1546240_G_T | chr17:1546240 | 0.035 | 0.089 | 0.006 | — |
| chr17_1546305_G_C | chr17:1546305 | -0.035 | -0.051 | -0.047 | — |
| chr17_1546314_T_C | chr17:1546314 | 0.034 | 0.063 | 0.041 | — |
| chr17_1534339_A_C | chr17:1534339 | 0.002 | 0.015 | 0.059 | — |
| chr17_1534341_G_A | chr17:1534341 | -0.008 | -0.020 | -0.059 | 0.0013% |
| chr17_1534347_T_C | chr17:1534347 | 0.008 | 0.023 | 0.059 | — |
| chr17_1534377_G_A | chr17:1534377 | -0.003 | -0.033 | -0.059 | <0.001% |
| chr17_1534380_A_T | chr17:1534380 | -0.015 | -0.028 | -0.059 | — |
| chr17_1534383_G_A | chr17:1534383 | -0.015 | -0.033 | -0.059 | — |
| chr17_1534442_A_C | chr17:1534442 | 0.005 | 0.005 | 0.059 | — |
| chr17_1534444_A_C | chr17:1534444 | 0.007 | 0.013 | 0.059 | — |
| chr17_1534444_A_G | chr17:1534444 | 0.000 | 0.003 | 0.059 | — |
Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.