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SCGB1C2

This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.

Scored variants near SCGB1C2

chr17:37,568..239,067, gene body plus 100 kb. Showing the strongest 200 by effect size.

Variant	Position	PXR	FXR	AhR	AF
chr17_180764_G_A	chr17:180764	0.333	0.272	1.000	0.0020%
chr17_164726_C_T	chr17:164726	-0.570	-0.154	-0.906	<0.001%
chr17_151186_C_T	chr17:151186	0.467	0.878	0.947	<0.001%
chr17_164722_A_T	chr17:164722	-0.512	-0.154	-0.900	0.0066%
chr17_163690_C_T	chr17:163690	0.457	0.359	0.759	0.022%
chr17_164723_T_C	chr17:164723	-0.434	-0.117	-0.800	0.0013%
chr17_143934_G_A	chr17:143934	0.413	0.194	0.624	<0.001%
chr17_151223_T_C	chr17:151223	-0.277	-0.580	-0.712	<0.001%
chr17_136709_C_T	chr17:136709	-0.299	-0.334	-0.701	0.0027%
chr17_180797_G_A	chr17:180797	0.076	0.067	0.653	0.0020%
chr17_151226_C_T	chr17:151226	-0.264	-0.523	-0.650	0.061%
chr17_180752_C_T	chr17:180752	-0.126	-0.038	-0.597	0.0013%
chr17_181048_T_G	chr17:181048	-0.054	-0.074	-0.587	0.0013%
chr17_180751_C_T	chr17:180751	-0.127	-0.038	-0.571	<0.001%
chr17_144152_T_G	chr17:144152	0.103	0.043	0.538	0.0027%
chr17_151233_G_A	chr17:151233	-0.187	-0.419	-0.529	0.019%
chr17_164703_C_T	chr17:164703	0.295	0.099	0.247	<0.001%
chr17_164707_G_A	chr17:164707	0.280	0.100	0.329	0.0013%
chr17_144087_G_A	chr17:144087	0.275	0.088	0.315	<0.001%
chr17_144100_G_A	chr17:144100	0.267	0.114	0.321	0.0010%
chr17_180656_C_A	chr17:180656	0.027	0.077	0.462	<0.001%
chr17_180659_C_A	chr17:180659	0.029	0.069	0.450	0.119%
chr17_181674_C_T	chr17:181674	-0.253	-0.085	-0.382	0.0020%
chr17_164768_C_T	chr17:164768	0.061	0.046	0.447	0.0039%
chr17_181818_C_A	chr17:181818	-0.008	0.076	0.446	<0.001%
chr17_151227_G_A	chr17:151227	-0.182	-0.339	-0.444	0.0020%
chr17_151207_C_A	chr17:151207	-0.176	-0.385	-0.426	<0.001%
chr17_136682_A_T	chr17:136682	-0.180	-0.180	-0.424	<0.001%
chr17_180814_G_A	chr17:180814	0.038	0.055	0.418	<0.001%
chr17_181016_A_C	chr17:181016	-0.004	-0.076	-0.416	0.0027%
chr17_143934_G_T	chr17:143934	0.231	0.038	0.138	<0.001%
chr17_180672_C_A	chr17:180672	0.011	0.054	0.406	<0.001%
chr17_181817_G_T	chr17:181817	-0.015	0.067	0.404	<0.001%
chr17_144154_T_G	chr17:144154	0.109	0.030	0.403	<0.001%
chr17_180650_C_T	chr17:180650	0.038	0.062	0.403	<0.001%
chr17_163706_A_T	chr17:163706	0.167	0.187	0.394	<0.001%
chr17_144080_G_A	chr17:144080	0.216	0.080	0.203	1.02%
chr17_180672_C_T	chr17:180672	-0.010	0.048	0.376	0.0013%
chr17_180636_C_A	chr17:180636	0.062	0.061	0.374	<0.001%
chr17_180732_G_A	chr17:180732	0.107	0.027	0.374	0.0013%
chr17_181838_G_A	chr17:181838	0.022	0.071	0.371	0.0059%
chr17_181725_C_A	chr17:181725	-0.208	-0.108	-0.297	<0.001%
chr17_144092_G_A	chr17:144092	0.207	0.051	0.162	0.0013%
chr17_180989_T_C	chr17:180989	-0.038	-0.049	-0.366	<0.001%
chr17_181804_G_A	chr17:181804	0.037	0.059	0.365	<0.001%
chr17_151114_A_G	chr17:151114	0.145	0.277	0.359	<0.001%
chr17_180660_G_A	chr17:180660	0.022	0.038	0.359	0.0013%
chr17_180957_C_T	chr17:180957	0.031	0.051	0.350	<0.001%
chr17_181679_C_T	chr17:181679	0.196	0.033	0.279	0.0013%
chr17_181803_C_T	chr17:181803	0.021	0.057	0.344	<0.001%
chr17_164767_G_A	chr17:164767	0.106	0.038	0.341	<0.001%
chr17_151194_C_T	chr17:151194	-0.129	-0.313	-0.338	<0.001%
chr17_181823_G_A	chr17:181823	-0.013	0.057	0.337	0.0020%
chr17_144011_A_G	chr17:144011	-0.102	-0.019	-0.329	<0.001%
chr17_163684_C_T	chr17:163684	-0.173	-0.133	-0.329	0.0020%
chr17_163686_C_T	chr17:163686	-0.170	-0.128	-0.329	0.0013%
chr17_181021_G_A	chr17:181021	0.036	0.036	0.328	0.0059%
chr17_180615_G_A	chr17:180615	0.014	0.042	0.326	<0.001%
chr17_180802_C_T	chr17:180802	-0.082	-0.060	-0.324	<0.001%
chr17_181766_C_T	chr17:181766	0.061	0.065	0.322	<0.001%
chr17_181170_G_A	chr17:181170	0.040	0.047	0.322	<0.001%
chr17_181730_C_T	chr17:181730	0.042	0.078	0.322	0.0033%
chr17_181659_C_T	chr17:181659	0.181	0.109	0.212	<0.001%
chr17_180671_G_T	chr17:180671	-0.002	0.050	0.318	0.017%
chr17_180747_A_C	chr17:180747	-0.082	-0.043	-0.318	<0.001%
chr17_163692_G_C	chr17:163692	-0.177	-0.154	-0.282	0.0013%
chr17_180619_C_T	chr17:180619	0.022	0.044	0.312	<0.001%
chr17_144064_G_C	chr17:144064	0.173	-0.006	0.097	<0.001%
chr17_163691_G_A	chr17:163691	-0.173	-0.133	-0.253	0.0033%
chr17_180620_G_A	chr17:180620	-0.004	0.034	0.306	0.0039%
chr17_180692_T_C	chr17:180692	-0.022	-0.036	-0.300	<0.001%
chr17_181791_C_T	chr17:181791	0.054	0.055	0.299	<0.001%
chr17_151221_G_A	chr17:151221	-0.113	-0.204	-0.294	<0.001%
chr17_181744_C_A	chr17:181744	0.043	0.064	0.292	<0.001%
chr17_151185_G_A	chr17:151185	0.146	0.298	0.291	0.037%
chr17_163691_G_T	chr17:163691	-0.164	-0.132	-0.253	0.0033%
chr17_181803_C_A	chr17:181803	0.025	0.034	0.289	<0.001%
chr17_181004_C_A	chr17:181004	0.002	0.042	0.288	0.0020%
chr17_180663_C_A	chr17:180663	0.053	0.039	0.285	0.0092%
chr17_180958_G_T	chr17:180958	0.024	0.029	0.282	0.0013%
chr17_181722_G_C	chr17:181722	0.158	0.049	0.207	0.0020%
chr17_181270_G_A	chr17:181270	0.019	0.040	0.277	<0.001%
chr17_180605_G_A	chr17:180605	0.025	0.036	0.276	<0.001%
chr17_181051_G_A	chr17:181051	0.039	0.038	0.276	0.0026%
chr17_181821_G_A	chr17:181821	-0.023	0.037	0.275	<0.001%
chr17_181153_C_T	chr17:181153	0.012	0.043	0.274	<0.001%
chr17_163682_C_A	chr17:163682	-0.136	-0.108	-0.265	0.0013%
chr17_180644_A_C	chr17:180644	-0.027	-0.048	-0.265	0.0013%
chr17_180668_G_A	chr17:180668	0.006	0.039	0.259	0.068%
chr17_180956_G_A	chr17:180956	0.022	0.033	0.256	0.0013%
chr17_181598_G_C	chr17:181598	-0.144	-0.038	-0.221	<0.001%
chr17_181722_G_A	chr17:181722	0.126	0.042	0.255	<0.001%
chr17_181780_C_T	chr17:181780	0.076	0.053	0.253	0.0033%
chr17_180939_C_T	chr17:180939	0.006	0.034	0.253	<0.001%
chr17_180959_C_A	chr17:180959	0.017	0.033	0.251	<0.001%
chr17_181763_C_T	chr17:181763	0.038	0.030	0.251	<0.001%
chr17_136667_G_A	chr17:136667	0.097	0.030	0.250	0.0034%
chr17_181677_G_C	chr17:181677	-0.120	-0.081	-0.249	<0.001%
chr17_143873_C_T	chr17:143873	-0.093	-0.008	-0.247	<0.001%
chr17_181049_G_A	chr17:181049	0.022	0.031	0.247	<0.001%
chr17_181613_G_C	chr17:181613	-0.139	-0.057	-0.204	0.064%
chr17_144094_G_A	chr17:144094	0.138	0.030	0.147	<0.001%
chr17_181029_G_A	chr17:181029	0.012	0.035	0.244	0.0013%
chr17_181013_G_T	chr17:181013	0.011	0.042	0.243	<0.001%
chr17_181674_C_A	chr17:181674	-0.137	-0.017	-0.155	<0.001%
chr17_180669_C_T	chr17:180669	0.002	0.032	0.241	<0.001%
chr17_180908_G_A	chr17:180908	0.037	0.041	0.241	<0.001%
chr17_181266_G_A	chr17:181266	0.074	0.038	0.240	0.0027%
chr17_181811_G_A	chr17:181811	0.101	0.068	0.239	<0.001%
chr17_181254_C_A	chr17:181254	0.042	0.035	0.239	0.0013%
chr17_180591_G_A	chr17:180591	0.007	0.029	0.235	<0.001%
chr17_181004_C_G	chr17:181004	-0.011	0.028	0.235	0.0026%
chr17_181015_G_T	chr17:181015	0.011	0.038	0.235	0.0013%
chr17_163703_A_G	chr17:163703	-0.059	-0.076	-0.232	<0.001%
chr17_180710_C_T	chr17:180710	0.023	0.030	0.232	<0.001%
chr17_181652_C_T	chr17:181652	0.101	0.070	0.232	0.072%
chr17_181309_G_T	chr17:181309	0.036	0.035	0.231	<0.001%
chr17_180590_G_A	chr17:180590	0.030	0.027	0.229	0.0059%
chr17_181053_G_T	chr17:181053	0.044	0.036	0.229	<0.001%
chr17_180958_G_A	chr17:180958	0.031	0.033	0.228	<0.001%
chr17_151135_G_C	chr17:151135	0.061	0.029	0.226	<0.001%
chr17_151284_A_G	chr17:151284	0.092	0.168	0.226	<0.001%
chr17_180969_G_T	chr17:180969	0.014	0.036	0.225	0.0026%
chr17_163887_G_T	chr17:163887	0.080	0.124	0.224	0.0020%
chr17_180693_G_A	chr17:180693	0.008	0.031	0.224	0.0020%
chr17_134713_C_A	chr17:134713	0.027	0.076	0.222	<0.001%
chr17_180607_G_A	chr17:180607	0.024	0.032	0.221	<0.001%
chr17_182356_C_T	chr17:182356	0.123	0.226	0.206	<0.001%
chr17_180979_G_T	chr17:180979	0.001	0.030	0.216	<0.001%
chr17_181308_C_A	chr17:181308	0.009	0.033	0.214	0.0040%
chr17_180999_C_T	chr17:180999	0.026	0.050	0.213	<0.001%
chr17_181079_G_A	chr17:181079	0.032	0.034	0.212	<0.001%
chr17_180617_G_A	chr17:180617	0.002	0.041	0.212	<0.001%
chr17_180635_C_A	chr17:180635	-0.016	0.046	0.212	<0.001%
chr17_180886_T_C	chr17:180886	0.009	-0.052	-0.209	<0.001%
chr17_180952_G_A	chr17:180952	-0.010	0.032	0.209	0.0013%
chr17_181050_G_T	chr17:181050	0.025	0.023	0.209	0.0026%
chr17_181754_C_T	chr17:181754	0.007	0.031	0.208	<0.001%
chr17_144086_C_T	chr17:144086	0.077	0.023	0.206	0.0021%
chr17_163619_A_G	chr17:163619	0.043	0.005	0.206	0.0020%
chr17_181191_T_C	chr17:181191	-0.020	-0.031	-0.205	0.016%
chr17_181293_C_T	chr17:181293	0.025	0.033	0.203	<0.001%
chr17_180715_G_T	chr17:180715	-0.004	0.030	0.203	<0.001%
chr17_181294_C_T	chr17:181294	0.025	0.036	0.201	<0.001%
chr17_180563_G_A	chr17:180563	0.026	0.022	0.200	<0.001%
chr17_180995_G_A	chr17:180995	0.008	0.028	0.199	<0.001%
chr17_181180_G_A	chr17:181180	0.017	0.031	0.197	<0.001%
chr17_180659_C_G	chr17:180659	0.029	0.040	0.194	<0.001%
chr17_180719_G_A	chr17:180719	0.011	0.018	0.194	<0.001%
chr17_180805_G_A	chr17:180805	0.000	0.036	0.194	0.0072%
chr17_180969_G_A	chr17:180969	0.011	0.031	0.194	0.0013%
chr17_181154_G_A	chr17:181154	0.032	0.028	0.193	<0.001%
chr17_181144_G_C	chr17:181144	0.015	0.008	0.190	<0.001%
chr17_151274_A_G	chr17:151274	-0.096	-0.211	-0.188	<0.001%
chr17_180703_G_A	chr17:180703	0.004	0.030	0.188	<0.001%
chr17_181268_C_T	chr17:181268	0.017	0.036	0.187	<0.001%
chr17_181285_G_T	chr17:181285	0.051	0.037	0.187	<0.001%
chr17_181151_G_A	chr17:181151	0.015	0.023	0.187	0.0026%
chr17_181756_C_T	chr17:181756	0.010	0.032	0.186	0.0020%
chr17_181256_C_T	chr17:181256	0.039	0.023	0.186	<0.001%
chr17_143872_A_T	chr17:143872	-0.043	-0.012	-0.185	<0.001%
chr17_181720_G_A	chr17:181720	0.052	0.032	0.182	0.0013%
chr17_180912_G_A	chr17:180912	0.033	0.007	0.179	0.0046%
chr17_181261_G_T	chr17:181261	0.069	0.011	0.178	<0.001%
chr17_181073_G_A	chr17:181073	0.016	0.034	0.177	0.0020%
chr17_181801_G_C	chr17:181801	-0.027	0.045	0.177	<0.001%
chr17_144061_T_C	chr17:144061	0.000	-0.064	-0.176	0.0010%
chr17_144130_T_C	chr17:144130	0.067	0.061	0.176	<0.001%
chr17_163867_G_A	chr17:163867	-0.100	-0.076	0.153	<0.001%
chr17_180815_A_C	chr17:180815	0.022	-0.037	-0.176	<0.001%
chr17_181077_G_A	chr17:181077	0.056	0.043	0.176	0.0020%
chr17_181285_G_A	chr17:181285	0.032	0.031	0.175	<0.001%
chr17_181041_G_A	chr17:181041	0.027	0.022	0.175	<0.001%
chr17_181150_C_T	chr17:181150	0.008	0.022	0.175	<0.001%
chr17_181322_G_A	chr17:181322	0.030	0.022	0.175	<0.001%
chr17_144035_G_A	chr17:144035	0.089	0.011	0.174	<0.001%
chr17_180805_G_T	chr17:180805	0.015	0.038	0.174	<0.001%
chr17_181078_G_T	chr17:181078	0.037	0.040	0.172	0.0013%
chr17_163835_T_C	chr17:163835	-0.038	-0.036	0.171	0.0013%
chr17_164806_G_A	chr17:164806	0.089	0.048	0.171	<0.001%
chr17_180710_C_G	chr17:180710	-0.085	-0.002	-0.171	<0.001%
chr17_181010_C_T	chr17:181010	-0.013	0.026	0.171	0.0013%
chr17_181670_G_A	chr17:181670	-0.097	-0.009	-0.095	0.0013%
chr17_182317_C_G	chr17:182317	-0.097	-0.112	-0.071	<0.001%
chr17_164769_G_T	chr17:164769	0.095	0.033	0.088	0.0046%
chr17_144036_G_T	chr17:144036	0.094	0.020	0.147	<0.001%
chr17_181660_C_A	chr17:181660	-0.094	-0.023	-0.049	<0.001%
chr17_181721_C_T	chr17:181721	0.039	0.034	0.166	<0.001%
chr17_181333_C_T	chr17:181333	0.012	0.032	0.165	0.0013%
chr17_143870_G_A	chr17:143870	-0.003	0.003	-0.165	<0.001%
chr17_151203_A_C	chr17:151203	-0.037	-0.175	-0.165	<0.001%
chr17_181072_G_A	chr17:181072	0.022	0.030	0.165	0.0013%
chr17_181755_G_A	chr17:181755	-0.092	0.010	0.129	0.011%
chr17_180503_A_G	chr17:180503	-0.032	-0.032	-0.162	<0.001%
chr17_181049_G_T	chr17:181049	0.012	0.024	0.162	0.0033%
chr17_181336_G_A	chr17:181336	0.027	0.023	0.161	<0.001%
chr17_136717_G_A	chr17:136717	-0.066	-0.036	-0.160	0.0041%
chr17_163708_C_T	chr17:163708	-0.063	-0.069	-0.159	0.0026%
chr17_180531_C_G	chr17:180531	-0.039	-0.018	-0.159	<0.001%
chr17_181748_G_A	chr17:181748	0.053	0.037	0.158	0.0027%

Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.