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SCGB1C2
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near SCGB1C2
chr17:37,568..239,067, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR ▾ | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr17_164726_C_T | chr17:164726 | -21,920 | -1,936 | -19,712 | 6.6e-6 |
| chr17_164722_A_T | chr17:164722 | -19,680 | -1,936 | -19,584 | 6.6e-5 |
| chr17_151186_C_T | chr17:151186 | 17,952 | 11,072 | 20,608 | 6.6e-6 |
| chr17_163690_C_T | chr17:163690 | 17,568 | 4,528 | 16,512 | 2.2e-4 |
| chr17_164723_T_C | chr17:164723 | -16,704 | -1,472 | -17,408 | 1.3e-5 |
| chr17_143934_G_A | chr17:143934 | 15,872 | 2,448 | 13,568 | 6.6e-6 |
| chr17_180764_G_A | chr17:180764 | 12,800 | 3,424 | 31,808 | 2.0e-5 |
| chr17_136709_C_T | chr17:136709 | -11,494 | -4,212 | -15,264 | 2.7e-5 |
| chr17_164703_C_T | chr17:164703 | 11,328 | 1,248 | 5,376 | 6.6e-6 |
| chr17_164707_G_A | chr17:164707 | 10,752 | 1,264 | 7,168 | 1.3e-5 |
| chr17_151223_T_C | chr17:151223 | -10,640 | -7,312 | -15,488 | 6.6e-6 |
| chr17_144087_G_A | chr17:144087 | 10,560 | 1,104 | 6,848 | 6.9e-6 |
| chr17_144100_G_A | chr17:144100 | 10,256 | 1,440 | 6,976 | 1.0e-5 |
| chr17_151226_C_T | chr17:151226 | -10,160 | -6,592 | -14,144 | 6.1e-4 |
| chr17_181674_C_T | chr17:181674 | -9,744 | -1,072 | -8,320 | 2.0e-5 |
| chr17_143934_G_T | chr17:143934 | 8,896 | 480 | 3,008 | 6.6e-6 |
| chr17_144080_G_A | chr17:144080 | 8,304 | 1,008 | 4,416 | 1.0e-2 |
| chr17_181725_C_A | chr17:181725 | -7,984 | -1,356 | -6,468 | 6.7e-6 |
| chr17_144092_G_A | chr17:144092 | 7,968 | 648 | 3,520 | 1.3e-5 |
| chr17_181679_C_T | chr17:181679 | 7,520 | 412 | 6,072 | 1.3e-5 |
| chr17_151233_G_A | chr17:151233 | -7,200 | -5,280 | -11,520 | 1.9e-4 |
| chr17_151227_G_A | chr17:151227 | -7,008 | -4,272 | -9,664 | 2.0e-5 |
| chr17_181659_C_T | chr17:181659 | 6,976 | 1,368 | 4,624 | 6.7e-6 |
| chr17_136682_A_T | chr17:136682 | -6,924 | -2,264 | -9,216 | 6.8e-6 |
| chr17_163692_G_C | chr17:163692 | -6,816 | -1,936 | -6,144 | 1.3e-5 |
| chr17_151207_C_A | chr17:151207 | -6,784 | -4,848 | -9,280 | 6.6e-6 |
| chr17_144064_G_C | chr17:144064 | 6,672 | -80 | 2,112 | 6.8e-6 |
| chr17_163684_C_T | chr17:163684 | -6,656 | -1,680 | -7,168 | 2.0e-5 |
| chr17_163691_G_A | chr17:163691 | -6,656 | -1,680 | -5,504 | 3.3e-5 |
| chr17_163686_C_T | chr17:163686 | -6,528 | -1,616 | -7,168 | 1.3e-5 |
| chr17_163706_A_T | chr17:163706 | 6,432 | 2,352 | 8,576 | 6.6e-6 |
| chr17_163691_G_T | chr17:163691 | -6,304 | -1,664 | -5,504 | 3.3e-5 |
| chr17_181722_G_C | chr17:181722 | 6,080 | 614 | 4,512 | 2.0e-5 |
| chr17_151185_G_A | chr17:151185 | 5,600 | 3,760 | 6,336 | 3.7e-4 |
| chr17_151114_A_G | chr17:151114 | 5,568 | 3,488 | 7,808 | 6.6e-6 |
| chr17_181598_G_C | chr17:181598 | -5,552 | -474 | -4,804 | 6.8e-6 |
| chr17_181613_G_C | chr17:181613 | -5,328 | -720 | -4,444 | 6.4e-4 |
| chr17_144094_G_A | chr17:144094 | 5,312 | 384 | 3,200 | 6.6e-6 |
| chr17_181674_C_A | chr17:181674 | -5,280 | -218 | -3,368 | 6.7e-6 |
| chr17_163682_C_A | chr17:163682 | -5,216 | -1,360 | -5,760 | 1.3e-5 |
| chr17_151194_C_T | chr17:151194 | -4,960 | -3,952 | -7,360 | 6.6e-6 |
| chr17_180751_C_T | chr17:180751 | -4,896 | -480 | -12,416 | 6.6e-6 |
| chr17_180752_C_T | chr17:180752 | -4,864 | -480 | -12,992 | 1.3e-5 |
| chr17_181722_G_A | chr17:181722 | 4,832 | 528 | 5,552 | 6.7e-6 |
| chr17_182356_C_T | chr17:182356 | 4,736 | 2,848 | 4,480 | 6.6e-6 |
| chr17_181677_G_C | chr17:181677 | -4,608 | -1,020 | -5,416 | 6.7e-6 |
| chr17_151221_G_A | chr17:151221 | -4,352 | -2,576 | -6,400 | 6.6e-6 |
| chr17_144154_T_G | chr17:144154 | 4,208 | 376 | 8,768 | 6.6e-6 |
| chr17_180732_G_A | chr17:180732 | 4,128 | 344 | 8,128 | 1.3e-5 |
| chr17_164767_G_A | chr17:164767 | 4,096 | 480 | 7,424 | 6.6e-6 |
| chr17_144152_T_G | chr17:144152 | 3,952 | 536 | 11,712 | 2.7e-5 |
| chr17_144011_A_G | chr17:144011 | -3,936 | -240 | -7,168 | 7.3e-6 |
| chr17_181811_G_A | chr17:181811 | 3,872 | 856 | 5,200 | 6.6e-6 |
| chr17_181652_C_T | chr17:181652 | 3,872 | 878 | 5,040 | 7.2e-4 |
| chr17_163867_G_A | chr17:163867 | -3,840 | -960 | 3,328 | 6.6e-6 |
| chr17_136667_G_A | chr17:136667 | 3,732 | 372 | 5,448 | 3.4e-5 |
| chr17_181670_G_A | chr17:181670 | -3,712 | -108 | -2,072 | 1.3e-5 |
| chr17_182317_C_G | chr17:182317 | -3,712 | -1,408 | -1,536 | 6.6e-6 |
| chr17_151274_A_G | chr17:151274 | -3,680 | -2,656 | -4,096 | 6.6e-6 |
| chr17_164769_G_T | chr17:164769 | 3,648 | 416 | 1,920 | 4.6e-5 |
| chr17_144036_G_T | chr17:144036 | 3,616 | 256 | 3,200 | 7.0e-6 |
| chr17_181660_C_A | chr17:181660 | -3,616 | -284 | -1,072 | 6.7e-6 |
| chr17_143873_C_T | chr17:143873 | -3,584 | -104 | -5,376 | 6.6e-6 |
| chr17_181755_G_A | chr17:181755 | -3,552 | 128 | 2,812 | 1.1e-4 |
| chr17_151284_A_G | chr17:151284 | 3,520 | 2,112 | 4,928 | 6.6e-6 |
| chr17_144035_G_A | chr17:144035 | 3,424 | 136 | 3,776 | 6.7e-6 |
| chr17_164806_G_A | chr17:164806 | 3,424 | 608 | 3,712 | 6.6e-6 |
| chr17_180710_C_G | chr17:180710 | -3,264 | -24 | -3,712 | 6.6e-6 |
| chr17_180747_A_C | chr17:180747 | -3,168 | -536 | -6,912 | 6.6e-6 |
| chr17_180802_C_T | chr17:180802 | -3,136 | -752 | -7,040 | 6.6e-6 |
| chr17_163887_G_T | chr17:163887 | 3,072 | 1,568 | 4,864 | 2.0e-5 |
| chr17_144086_C_T | chr17:144086 | 2,960 | 288 | 4,480 | 2.1e-5 |
| chr17_180797_G_A | chr17:180797 | 2,912 | 840 | 14,208 | 2.0e-5 |
| chr17_181780_C_T | chr17:181780 | 2,912 | 664 | 5,512 | 3.3e-5 |
| chr17_181266_G_A | chr17:181266 | 2,848 | 480 | 5,232 | 2.7e-5 |
| chr17_181261_G_T | chr17:181261 | 2,656 | 140 | 3,864 | 6.6e-6 |
| chr17_144130_T_C | chr17:144130 | 2,592 | 768 | 3,840 | 6.8e-6 |
| chr17_136717_G_A | chr17:136717 | -2,524 | -456 | -3,488 | 4.1e-5 |
| chr17_163708_C_T | chr17:163708 | -2,432 | -864 | -3,456 | 2.6e-5 |
| chr17_180636_C_A | chr17:180636 | 2,400 | 768 | 8,128 | 6.6e-6 |
| chr17_164768_C_T | chr17:164768 | 2,336 | 576 | 9,728 | 3.9e-5 |
| chr17_181766_C_T | chr17:181766 | 2,336 | 820 | 7,016 | 6.6e-6 |
| chr17_151135_G_C | chr17:151135 | 2,336 | 368 | 4,928 | 6.6e-6 |
| chr17_163703_A_G | chr17:163703 | -2,272 | -960 | -5,056 | 6.6e-6 |
| chr17_181077_G_A | chr17:181077 | 2,144 | 548 | 3,824 | 2.0e-5 |
| chr17_181048_T_G | chr17:181048 | -2,080 | -928 | -12,768 | 1.3e-5 |
| chr17_181791_C_T | chr17:181791 | 2,080 | 696 | 6,512 | 6.6e-6 |
| chr17_180663_C_A | chr17:180663 | 2,048 | 496 | 6,208 | 9.2e-5 |
| chr17_181748_G_A | chr17:181748 | 2,048 | 468 | 3,428 | 2.7e-5 |
| chr17_181720_G_A | chr17:181720 | 2,000 | 406 | 3,952 | 1.3e-5 |
| chr17_181285_G_T | chr17:181285 | 1,952 | 468 | 4,072 | 6.7e-6 |
| chr17_181053_G_T | chr17:181053 | 1,696 | 452 | 4,992 | 6.6e-6 |
| chr17_181744_C_A | chr17:181744 | 1,664 | 812 | 6,356 | 6.6e-6 |
| chr17_163619_A_G | chr17:163619 | 1,664 | 64 | 4,480 | 2.0e-5 |
| chr17_143872_A_T | chr17:143872 | -1,664 | -152 | -4,032 | 6.6e-6 |
| chr17_181254_C_A | chr17:181254 | 1,632 | 446 | 5,192 | 1.3e-5 |
| chr17_181730_C_T | chr17:181730 | 1,600 | 982 | 6,996 | 3.3e-5 |
| chr17_181170_G_A | chr17:181170 | 1,552 | 592 | 7,000 | 6.6e-6 |
| chr17_181051_G_A | chr17:181051 | 1,504 | 480 | 6,016 | 2.6e-5 |
| chr17_181256_C_T | chr17:181256 | 1,504 | 286 | 4,044 | 6.6e-6 |
| chr17_180531_C_G | chr17:180531 | -1,504 | -232 | -3,456 | 6.6e-6 |
| chr17_181721_C_T | chr17:181721 | 1,488 | 426 | 3,616 | 6.7e-6 |
| chr17_180814_G_A | chr17:180814 | 1,472 | 688 | 9,088 | 6.6e-6 |
| chr17_180650_C_T | chr17:180650 | 1,472 | 776 | 8,768 | 6.6e-6 |
| chr17_180989_T_C | chr17:180989 | -1,472 | -624 | -7,968 | 6.6e-6 |
| chr17_181763_C_T | chr17:181763 | 1,472 | 382 | 5,452 | 6.6e-6 |
| chr17_163835_T_C | chr17:163835 | -1,472 | -448 | 3,712 | 1.3e-5 |
| chr17_181804_G_A | chr17:181804 | 1,408 | 748 | 7,944 | 6.6e-6 |
| chr17_180908_G_A | chr17:180908 | 1,408 | 512 | 5,248 | 6.6e-6 |
| chr17_181078_G_T | chr17:181078 | 1,408 | 500 | 3,744 | 1.3e-5 |
| chr17_151203_A_C | chr17:151203 | -1,408 | -2,208 | -3,584 | 6.6e-6 |
| chr17_181021_G_A | chr17:181021 | 1,376 | 452 | 7,136 | 5.9e-5 |
| chr17_181309_G_T | chr17:181309 | 1,376 | 442 | 5,024 | 6.7e-6 |
| chr17_180912_G_A | chr17:180912 | 1,280 | 88 | 3,904 | 4.6e-5 |
| chr17_181079_G_A | chr17:181079 | 1,248 | 432 | 4,624 | 6.6e-6 |
| chr17_180503_A_G | chr17:180503 | -1,248 | -400 | -3,520 | 6.6e-6 |
| chr17_181154_G_A | chr17:181154 | 1,216 | 352 | 4,200 | 6.6e-6 |
| chr17_181285_G_A | chr17:181285 | 1,216 | 386 | 3,816 | 6.7e-6 |
| chr17_180957_C_T | chr17:180957 | 1,184 | 640 | 7,616 | 6.6e-6 |
| chr17_180958_G_A | chr17:180958 | 1,184 | 416 | 4,960 | 6.6e-6 |
| chr17_180590_G_A | chr17:180590 | 1,152 | 344 | 4,992 | 5.9e-5 |
| chr17_181322_G_A | chr17:181322 | 1,152 | 278 | 3,808 | 6.7e-6 |
| chr17_180659_C_A | chr17:180659 | 1,120 | 872 | 9,792 | 1.2e-3 |
| chr17_180659_C_G | chr17:180659 | 1,120 | 504 | 4,224 | 6.6e-6 |
| chr17_134713_C_A | chr17:134713 | 1,048 | 962 | 4,836 | 6.6e-6 |
| chr17_181336_G_A | chr17:181336 | 1,040 | 296 | 3,512 | 6.7e-6 |
| chr17_180656_C_A | chr17:180656 | 1,024 | 976 | 10,048 | 6.6e-6 |
| chr17_180644_A_C | chr17:180644 | -1,024 | -600 | -5,760 | 1.3e-5 |
| chr17_181801_G_C | chr17:181801 | -1,024 | 568 | 3,856 | 6.6e-6 |
| chr17_181041_G_A | chr17:181041 | 1,024 | 272 | 3,808 | 6.6e-6 |
| chr17_180999_C_T | chr17:180999 | 992 | 636 | 4,640 | 6.6e-6 |
| chr17_180563_G_A | chr17:180563 | 992 | 280 | 4,352 | 6.6e-6 |
| chr17_181803_C_A | chr17:181803 | 960 | 424 | 6,288 | 6.6e-6 |
| chr17_180605_G_A | chr17:180605 | 960 | 456 | 6,016 | 6.6e-6 |
| chr17_181050_G_T | chr17:181050 | 960 | 296 | 4,544 | 2.6e-5 |
| chr17_181293_C_T | chr17:181293 | 960 | 420 | 4,424 | 6.7e-6 |
| chr17_181294_C_T | chr17:181294 | 960 | 450 | 4,384 | 6.7e-6 |
| chr17_180958_G_T | chr17:180958 | 928 | 360 | 6,144 | 1.3e-5 |
| chr17_180607_G_A | chr17:180607 | 928 | 400 | 4,800 | 6.6e-6 |
| chr17_181821_G_A | chr17:181821 | -896 | 472 | 5,984 | 6.6e-6 |
| chr17_180710_C_T | chr17:180710 | 896 | 376 | 5,056 | 6.6e-6 |
| chr17_180660_G_A | chr17:180660 | 864 | 480 | 7,808 | 1.3e-5 |
| chr17_180956_G_A | chr17:180956 | 864 | 420 | 5,568 | 1.3e-5 |
| chr17_181072_G_A | chr17:181072 | 864 | 372 | 3,584 | 1.3e-5 |
| chr17_181838_G_A | chr17:181838 | 832 | 896 | 8,064 | 5.9e-5 |
| chr17_180619_C_T | chr17:180619 | 832 | 560 | 6,784 | 6.6e-6 |
| chr17_180692_T_C | chr17:180692 | -832 | -448 | -6,528 | 6.6e-6 |
| chr17_181049_G_A | chr17:181049 | 832 | 392 | 5,376 | 6.6e-6 |
| chr17_180815_A_C | chr17:180815 | 832 | -472 | -3,840 | 6.6e-6 |
| chr17_181803_C_T | chr17:181803 | 800 | 716 | 7,488 | 6.6e-6 |
| chr17_181191_T_C | chr17:181191 | -752 | -394 | -4,464 | 1.6e-4 |
| chr17_181270_G_A | chr17:181270 | 736 | 500 | 6,032 | 6.7e-6 |
| chr17_181180_G_A | chr17:181180 | 672 | 392 | 4,296 | 6.6e-6 |
| chr17_181268_C_T | chr17:181268 | 672 | 454 | 4,072 | 6.7e-6 |
| chr17_180959_C_A | chr17:180959 | 640 | 412 | 5,472 | 6.6e-6 |
| chr17_180635_C_A | chr17:180635 | -608 | 584 | 4,608 | 6.6e-6 |
| chr17_181073_G_A | chr17:181073 | 608 | 424 | 3,856 | 2.0e-5 |
| chr17_181817_G_T | chr17:181817 | -576 | 848 | 8,800 | 6.6e-6 |
| chr17_181144_G_C | chr17:181144 | 576 | 96 | 4,136 | 6.6e-6 |
| chr17_181151_G_A | chr17:181151 | 576 | 294 | 4,064 | 2.6e-5 |
| chr17_180805_G_T | chr17:180805 | 576 | 480 | 3,776 | 6.6e-6 |
| chr17_180615_G_A | chr17:180615 | 544 | 528 | 7,104 | 6.6e-6 |
| chr17_180969_G_T | chr17:180969 | 544 | 460 | 4,896 | 2.6e-5 |
| chr17_181823_G_A | chr17:181823 | -512 | 716 | 7,328 | 2.0e-5 |
| chr17_181010_C_T | chr17:181010 | -512 | 332 | 3,712 | 1.3e-5 |
| chr17_181153_C_T | chr17:181153 | 480 | 546 | 5,952 | 6.6e-6 |
| chr17_181029_G_A | chr17:181029 | 448 | 444 | 5,312 | 1.3e-5 |
| chr17_181333_C_T | chr17:181333 | 448 | 406 | 3,600 | 1.3e-5 |
| chr17_181049_G_T | chr17:181049 | 448 | 304 | 3,520 | 3.3e-5 |
| chr17_180672_C_A | chr17:180672 | 416 | 680 | 8,832 | 6.6e-6 |
| chr17_181013_G_T | chr17:181013 | 416 | 528 | 5,280 | 6.6e-6 |
| chr17_181004_C_G | chr17:181004 | -416 | 356 | 5,120 | 2.6e-5 |
| chr17_181015_G_T | chr17:181015 | 416 | 480 | 5,120 | 1.3e-5 |
| chr17_180719_G_A | chr17:180719 | 416 | 224 | 4,224 | 6.6e-6 |
| chr17_180969_G_A | chr17:180969 | 416 | 392 | 4,224 | 1.3e-5 |
| chr17_180672_C_T | chr17:180672 | -384 | 608 | 8,192 | 1.3e-5 |
| chr17_180952_G_A | chr17:180952 | -384 | 404 | 4,544 | 1.3e-5 |
| chr17_181756_C_T | chr17:181756 | 384 | 400 | 4,056 | 2.0e-5 |
| chr17_180886_T_C | chr17:180886 | 352 | -656 | -4,544 | 6.6e-6 |
| chr17_181308_C_A | chr17:181308 | 336 | 420 | 4,664 | 4.0e-5 |
| chr17_181818_C_A | chr17:181818 | -320 | 964 | 9,712 | 6.6e-6 |
| chr17_180693_G_A | chr17:180693 | 320 | 392 | 4,864 | 2.0e-5 |
| chr17_180995_G_A | chr17:180995 | 320 | 356 | 4,320 | 6.6e-6 |
| chr17_181150_C_T | chr17:181150 | 320 | 276 | 3,808 | 6.6e-6 |
| chr17_180591_G_A | chr17:180591 | 288 | 368 | 5,120 | 6.6e-6 |
| chr17_181754_C_T | chr17:181754 | 256 | 396 | 4,516 | 6.6e-6 |
| chr17_180668_G_A | chr17:180668 | 224 | 496 | 5,632 | 6.8e-4 |
| chr17_180939_C_T | chr17:180939 | 224 | 424 | 5,504 | 6.6e-6 |
| chr17_181016_A_C | chr17:181016 | -160 | -952 | -9,056 | 2.7e-5 |
| chr17_180620_G_A | chr17:180620 | -160 | 424 | 6,656 | 3.9e-5 |
| chr17_180715_G_T | chr17:180715 | -160 | 376 | 4,416 | 6.6e-6 |
| chr17_180703_G_A | chr17:180703 | 160 | 376 | 4,096 | 6.6e-6 |
| chr17_143870_G_A | chr17:143870 | -128 | 32 | -3,584 | 6.6e-6 |
| chr17_181004_C_A | chr17:181004 | 96 | 528 | 6,272 | 2.0e-5 |
| chr17_180669_C_T | chr17:180669 | 96 | 408 | 5,248 | 6.6e-6 |
| chr17_180617_G_A | chr17:180617 | 96 | 512 | 4,608 | 6.6e-6 |
| chr17_180671_G_T | chr17:180671 | -64 | 632 | 6,912 | 1.7e-4 |
| chr17_180979_G_T | chr17:180979 | 32 | 372 | 4,704 | 6.6e-6 |
| chr17_180805_G_A | chr17:180805 | 0 | 448 | 4,224 | 7.2e-5 |
| chr17_144061_T_C | chr17:144061 | 0 | -808 | -3,840 | 1.0e-5 |
Showing 200 of 200 in this window. Scores are the raw center bin Δ, ALT minus REF; click a column to sort.