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SCT
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near SCT
chr11:526,308..727,181, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR ▾ | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr11_551758_G_C | chr11:551758 | 20,416 | 2,912 | 16,000 | 6.6e-6 |
| chr11_537477_G_C | chr11:537477 | -17,472 | -5,760 | -37,632 | 1.3e-5 |
| chr11_537455_A_G | chr11:537455 | -16,384 | -3,104 | -15,616 | 6.6e-6 |
| chr11_537477_G_A | chr11:537477 | -16,000 | -3,808 | -19,712 | 6.6e-6 |
| chr11_537452_C_G | chr11:537452 | -12,416 | -3,072 | -21,504 | 1.3e-5 |
| chr11_553518_A_G | chr11:553518 | -12,096 | -5,456 | -20,480 | 1.3e-5 |
| chr11_537452_C_A | chr11:537452 | -9,536 | -2,352 | -17,408 | 2.6e-5 |
| chr11_535542_C_G | chr11:535542 | 9,536 | 528 | 3,200 | 6.8e-6 |
| chr11_537430_C_G | chr11:537430 | 9,152 | 1,424 | 18,944 | 1.3e-5 |
| chr11_535744_G_A | chr11:535744 | 9,088 | 2,812 | 8,848 | 3.3e-5 |
| chr11_553542_T_G | chr11:553542 | -9,056 | -4,560 | -9,984 | 3.3e-5 |
| chr11_553553_G_A | chr11:553553 | -8,608 | -3,616 | -12,160 | 6.6e-6 |
| chr11_537483_A_G | chr11:537483 | -8,576 | -2,496 | 2,304 | 6.6e-6 |
| chr11_553454_G_T | chr11:553454 | 8,352 | 4,272 | 10,880 | 6.6e-6 |
| chr11_553517_G_C | chr11:553517 | 8,288 | 3,024 | 13,568 | 6.6e-6 |
| chr11_535474_G_T | chr11:535474 | 8,288 | 23 | 500 | 1.1e-3 |
| chr11_553543_C_T | chr11:553543 | -7,872 | -3,824 | -9,216 | 3.3e-5 |
| chr11_553516_G_A | chr11:553516 | 7,712 | 3,696 | 12,160 | 6.6e-6 |
| chr11_537513_C_G | chr11:537513 | -7,552 | -2,272 | -9,984 | 5.9e-5 |
| chr11_553545_G_A | chr11:553545 | -7,520 | -3,424 | -9,856 | 6.6e-6 |
| chr11_537485_G_C | chr11:537485 | -6,848 | -3,312 | -4,096 | 6.6e-6 |
| chr11_553442_G_A | chr11:553442 | 6,752 | 2,864 | 11,008 | 2.6e-5 |
| chr11_535739_C_T | chr11:535739 | 6,592 | 1,948 | 6,224 | 2.0e-5 |
| chr11_553563_G_A | chr11:553563 | 6,496 | 2,672 | 6,656 | 6.6e-6 |
| chr11_537554_A_G | chr11:537554 | -6,336 | -864 | -8,448 | 6.6e-6 |
| chr11_537428_C_G | chr11:537428 | 6,336 | 1,168 | 8,192 | 6.6e-6 |
| chr11_535489_G_A | chr11:535489 | 6,240 | 296 | 2,544 | 6.8e-6 |
| chr11_535463_G_A | chr11:535463 | 6,176 | 160 | 1,844 | 1.0e-1 |
| chr11_535503_A_G | chr11:535503 | -6,176 | -172 | -3,792 | 2.0e-5 |
| chr11_537456_T_C | chr11:537456 | -6,144 | -256 | 2,816 | 6.6e-6 |
| chr11_537550_G_A | chr11:537550 | -5,888 | -912 | -8,960 | 6.6e-6 |
| chr11_535671_G_T | chr11:535671 | 5,696 | 718 | 4,464 | 1.3e-5 |
| chr11_535518_G_A | chr11:535518 | 5,504 | 334 | 2,508 | 6.8e-6 |
| chr11_535824_G_A | chr11:535824 | 5,440 | 32 | 2,176 | 2.0e-5 |
| chr11_535603_G_T | chr11:535603 | 5,312 | 604 | 3,992 | 6.6e-6 |
| chr11_535764_G_C | chr11:535764 | -5,248 | -496 | -3,136 | 1.3e-5 |
| chr11_535541_G_A | chr11:535541 | 5,216 | 283 | 3,296 | 2.0e-5 |
| chr11_537476_C_A | chr11:537476 | -5,184 | -736 | -1,792 | 6.6e-6 |
| chr11_537568_C_G | chr11:537568 | 5,120 | 528 | 512 | 6.6e-6 |
| chr11_535823_G_T | chr11:535823 | 5,056 | 208 | 3,776 | 6.6e-6 |
| chr11_537501_C_T | chr11:537501 | -5,056 | -848 | -2,048 | 4.6e-5 |
| chr11_535363_C_A | chr11:535363 | -5,040 | 182 | 1,404 | 6.9e-6 |
| chr11_535335_C_T | chr11:535335 | 4,928 | -87 | 604 | 2.1e-5 |
| chr11_553481_G_A | chr11:553481 | -4,928 | -2,032 | -4,864 | 6.6e-6 |
| chr11_537429_C_G | chr11:537429 | 4,800 | 1,472 | 10,752 | 6.6e-6 |
| chr11_535649_C_T | chr11:535649 | 4,800 | 1,658 | 5,976 | 2.4e-1 |
| chr11_535369_G_A | chr11:535369 | 4,768 | 2 | 1,076 | 4.9e-2 |
| chr11_537404_T_C | chr11:537404 | -4,736 | -752 | -11,776 | 6.6e-6 |
| chr11_535586_C_G | chr11:535586 | -4,736 | -569 | -4,236 | 6.6e-6 |
| chr11_537506_C_G | chr11:537506 | -4,608 | -624 | -8,448 | 6.6e-6 |
| chr11_553443_G_A | chr11:553443 | 4,576 | 1,776 | 8,704 | 2.6e-5 |
| chr11_535647_C_T | chr11:535647 | 4,544 | 1,106 | 5,536 | 6.6e-6 |
| chr11_535511_C_A | chr11:535511 | 4,512 | 180 | 1,332 | 1.4e-5 |
| chr11_535720_G_A | chr11:535720 | 4,480 | 532 | 3,984 | 1.3e-5 |
| chr11_536116_T_C | chr11:536116 | -4,352 | -1,328 | -18,688 | 6.6e-6 |
| chr11_553490_G_A | chr11:553490 | -4,352 | -1,296 | 896 | 2.0e-5 |
| chr11_537435_C_T | chr11:537435 | 4,288 | 1,584 | 9,216 | 6.6e-6 |
| chr11_553538_A_G | chr11:553538 | -4,288 | -1,712 | -2,432 | 6.6e-6 |
| chr11_535653_A_C | chr11:535653 | -4,224 | -1,493 | -8,872 | 1.3e-5 |
| chr11_535511_C_T | chr11:535511 | 4,224 | 311 | 1,984 | 4.1e-5 |
| chr11_551447_C_T | chr11:551447 | 4,160 | 1,592 | 4,608 | 3.3e-5 |
| chr11_535321_C_A | chr11:535321 | 4,160 | 20 | 2,336 | 8.2e-5 |
| chr11_535489_G_T | chr11:535489 | 4,160 | 155 | 1,736 | 5.5e-5 |
| chr11_535683_G_A | chr11:535683 | -4,160 | 202 | -832 | 6.6e-6 |
| chr11_535697_G_C | chr11:535697 | 4,160 | 1,196 | 1,832 | 6.6e-6 |
| chr11_535543_G_A | chr11:535543 | 4,128 | 592 | 2,694 | 6.8e-6 |
| chr11_535621_A_G | chr11:535621 | -4,032 | -952 | -4,088 | 6.6e-6 |
| chr11_535496_C_T | chr11:535496 | 4,032 | 116 | 1,684 | 6.8e-6 |
| chr11_537634_G_A | chr11:537634 | 4,032 | 736 | 3,328 | 6.6e-6 |
| chr11_537556_G_A | chr11:537556 | 3,968 | 608 | 5,632 | 6.6e-6 |
| chr11_535610_A_G | chr11:535610 | -3,968 | -1,261 | -4,296 | 1.3e-5 |
| chr11_535506_G_A | chr11:535506 | 3,936 | 86 | 1,416 | 8.8e-5 |
| chr11_551760_C_T | chr11:551760 | -3,936 | 560 | -1,408 | 1.3e-5 |
| chr11_537432_C_T | chr11:537432 | 3,904 | 976 | 4,864 | 6.6e-6 |
| chr11_553502_C_T | chr11:553502 | -3,744 | -1,568 | -5,888 | 2.0e-5 |
| chr11_535867_G_A | chr11:535867 | 3,648 | 1,328 | 5,120 | 6.6e-6 |
| chr11_537488_G_C | chr11:537488 | -3,392 | -816 | -7,424 | 1.2e-4 |
| chr11_526325_C_T | chr11:526325 | -3,344 | -1,296 | -5,376 | 1.3e-5 |
| chr11_535599_G_T | chr11:535599 | 3,264 | 1,166 | 6,960 | 1.3e-5 |
| chr11_537447_A_G | chr11:537447 | -3,200 | -480 | -5,376 | 6.6e-6 |
| chr11_535724_G_A | chr11:535724 | 3,136 | 1,432 | 12,888 | 1.3e-5 |
| chr11_537507_G_A | chr11:537507 | -3,008 | -544 | -6,400 | 6.4e-3 |
| chr11_537435_C_G | chr11:537435 | 2,944 | 624 | -14,336 | 2.0e-5 |
| chr11_535095_T_C | chr11:535095 | -2,944 | -340 | -8,596 | 6.6e-6 |
| chr11_537417_C_A | chr11:537417 | -2,880 | -1,216 | -11,776 | 3.9e-5 |
| chr11_535555_C_A | chr11:535555 | 2,880 | 468 | 5,420 | 1.3e-5 |
| chr11_551116_C_T | chr11:551116 | 2,816 | 1,600 | 14,464 | 6.6e-6 |
| chr11_551348_C_A | chr11:551348 | 2,816 | 720 | 8,640 | 6.6e-6 |
| chr11_535829_G_A | chr11:535829 | 2,816 | 560 | 5,632 | 3.3e-5 |
| chr11_535581_A_C | chr11:535581 | -2,816 | -778 | -5,064 | 6.8e-6 |
| chr11_551112_C_T | chr11:551112 | 2,752 | 2,024 | 17,152 | 1.3e-5 |
| chr11_551104_T_C | chr11:551104 | -2,624 | -868 | -10,368 | 6.7e-6 |
| chr11_536113_A_C | chr11:536113 | -2,496 | -704 | -11,008 | 6.6e-6 |
| chr11_537426_A_C | chr11:537426 | 2,432 | 800 | 5,376 | 6.6e-6 |
| chr11_526337_G_A | chr11:526337 | -2,400 | -1,552 | -4,224 | 2.0e-5 |
| chr11_551115_C_T | chr11:551115 | 2,336 | 1,336 | 12,736 | 3.9e-5 |
| chr11_544291_C_T | chr11:544291 | -2,336 | -568 | -4,608 | 3.2e-3 |
| chr11_544370_A_T | chr11:544370 | 2,336 | 616 | 4,352 | 1.3e-5 |
| chr11_535726_G_A | chr11:535726 | 2,304 | 1,226 | 12,264 | 1.4e-4 |
| chr11_537519_A_G | chr11:537519 | 2,304 | 576 | 7,680 | 2.6e-5 |
| chr11_551368_C_G | chr11:551368 | 2,272 | 1,056 | 9,280 | 1.3e-5 |
| chr11_535777_G_C | chr11:535777 | -2,176 | 456 | 5,056 | 3.3e-5 |
| chr11_537411_G_C | chr11:537411 | -2,176 | -592 | -4,608 | 6.6e-6 |
| chr11_551122_C_T | chr11:551122 | 2,112 | 1,504 | 15,488 | 6.6e-6 |
| chr11_537395_T_A | chr11:537395 | -2,112 | -2,560 | -5,632 | 6.6e-6 |
| chr11_551117_C_T | chr11:551117 | 2,080 | 968 | 8,576 | 6.6e-6 |
| chr11_551196_C_G | chr11:551196 | 2,016 | 248 | -5,376 | 6.6e-6 |
| chr11_535923_T_C | chr11:535923 | -1,984 | -1,120 | -11,776 | 6.6e-6 |
| chr11_551323_G_A | chr11:551323 | 1,936 | 64 | -6,080 | 6.6e-6 |
| chr11_537418_G_A | chr11:537418 | -1,920 | -160 | -8,192 | 6.6e-6 |
| chr11_535752_G_T | chr11:535752 | -1,920 | 280 | 6,400 | 6.6e-6 |
| chr11_537607_T_G | chr11:537607 | 1,920 | 752 | -5,632 | 6.6e-6 |
| chr11_551365_C_T | chr11:551365 | 1,824 | 968 | 9,728 | 1.4e-4 |
| chr11_537605_G_C | chr11:537605 | 1,792 | 976 | 11,264 | 6.6e-6 |
| chr11_536119_C_G | chr11:536119 | 1,728 | 416 | 4,096 | 6.6e-6 |
| chr11_537417_C_G | chr11:537417 | -1,664 | -592 | -4,864 | 6.6e-6 |
| chr11_537424_C_T | chr11:537424 | -1,600 | -608 | -6,656 | 6.6e-6 |
| chr11_536218_C_T | chr11:536218 | 1,600 | 624 | 4,608 | 5.9e-5 |
| chr11_535893_C_T | chr11:535893 | 1,472 | 560 | 4,864 | 6.6e-6 |
| chr11_535181_C_T | chr11:535181 | 1,472 | 104 | 4,464 | 3.3e-5 |
| chr11_535991_C_T | chr11:535991 | 1,472 | 544 | 4,352 | 1.1e-3 |
| chr11_551338_C_T | chr11:551338 | 1,440 | 736 | 5,696 | 4.8e-2 |
| chr11_536119_C_T | chr11:536119 | 1,408 | 400 | 4,352 | 6.6e-6 |
| chr11_526508_C_T | chr11:526508 | -1,388 | -1,312 | -4,288 | 6.6e-6 |
| chr11_535171_C_A | chr11:535171 | 1,376 | 277 | 5,244 | 1.3e-5 |
| chr11_536134_A_C | chr11:536134 | -1,344 | -672 | -7,680 | 6.6e-6 |
| chr11_536024_G_T | chr11:536024 | 1,344 | 192 | 5,888 | 4.6e-5 |
| chr11_536120_C_G | chr11:536120 | 1,344 | 480 | 4,608 | 6.6e-6 |
| chr11_551347_C_A | chr11:551347 | 1,312 | 864 | 8,000 | 6.6e-6 |
| chr11_536141_C_A | chr11:536141 | 1,280 | 384 | 7,424 | 1.3e-5 |
| chr11_551347_C_G | chr11:551347 | 1,216 | 736 | 7,872 | 1.3e-5 |
| chr11_551339_C_G | chr11:551339 | 1,184 | 992 | 6,976 | 6.6e-6 |
| chr11_535143_G_A | chr11:535143 | 1,184 | 375 | 6,456 | 6.6e-6 |
| chr11_535128_G_A | chr11:535128 | 1,152 | 435 | 7,436 | 5.3e-5 |
| chr11_535996_G_A | chr11:535996 | 1,152 | 512 | 5,632 | 6.6e-6 |
| chr11_535959_C_T | chr11:535959 | 1,088 | 560 | 4,864 | 1.3e-5 |
| chr11_535553_G_T | chr11:535553 | -1,024 | -650 | 7,392 | 6.7e-6 |
| chr11_535965_C_T | chr11:535965 | 1,024 | 624 | 4,864 | 6.6e-6 |
| chr11_536109_C_G | chr11:536109 | 1,024 | 304 | 4,352 | 9.2e-5 |
| chr11_535098_T_G | chr11:535098 | -992 | -606 | -9,376 | 2.4e-1 |
| chr11_535089_G_A | chr11:535089 | 992 | 467 | 7,552 | 6.6e-6 |
| chr11_536029_C_A | chr11:536029 | 960 | 288 | 8,960 | 2.6e-3 |
| chr11_544253_C_G | chr11:544253 | -960 | -848 | -6,272 | 6.6e-6 |
| chr11_535972_C_A | chr11:535972 | -960 | 64 | 4,864 | 6.6e-6 |
| chr11_535171_C_T | chr11:535171 | 928 | 248 | 4,924 | 6.6e-6 |
| chr11_544243_G_A | chr11:544243 | 896 | 1,680 | 9,600 | 6.6e-6 |
| chr11_537500_A_C | chr11:537500 | -896 | -400 | 8,192 | 5.3e-5 |
| chr11_535091_C_A | chr11:535091 | 896 | 258 | 5,968 | 6.6e-6 |
| chr11_535086_G_A | chr11:535086 | 864 | 460 | 7,732 | 1.3e-5 |
| chr11_535141_C_T | chr11:535141 | 864 | 425 | 6,868 | 2.4e-3 |
| chr11_535929_G_A | chr11:535929 | 832 | 528 | 7,168 | 1.3e-5 |
| chr11_535088_G_T | chr11:535088 | 832 | 348 | 5,596 | 1.3e-5 |
| chr11_537513_C_A | chr11:537513 | -832 | -96 | -4,352 | 3.5e-4 |
| chr11_535087_C_T | chr11:535087 | 768 | 351 | 7,184 | 2.0e-5 |
| chr11_535154_G_A | chr11:535154 | 768 | 355 | 6,962 | 2.0e-5 |
| chr11_535971_G_A | chr11:535971 | 768 | 208 | 4,608 | 1.3e-5 |
| chr11_536157_C_T | chr11:536157 | 768 | 496 | 4,352 | 1.3e-5 |
| chr11_535991_C_A | chr11:535991 | 768 | 528 | 4,096 | 6.6e-6 |
| chr11_536120_C_T | chr11:536120 | 768 | 336 | 4,096 | 6.6e-6 |
| chr11_535152_G_A | chr11:535152 | 736 | 461 | 5,892 | 6.6e-6 |
| chr11_535777_G_A | chr11:535777 | 704 | 1,872 | 10,720 | 6.6e-6 |
| chr11_535928_C_T | chr11:535928 | 704 | 752 | 10,240 | 6.6e-6 |
| chr11_535925_C_T | chr11:535925 | 704 | 736 | 8,960 | 6.6e-6 |
| chr11_535118_G_A | chr11:535118 | 672 | 403 | 6,956 | 6.6e-6 |
| chr11_535875_C_T | chr11:535875 | 640 | 576 | 7,936 | 6.6e-6 |
| chr11_535851_C_T | chr11:535851 | -640 | 304 | 5,632 | 6.6e-6 |
| chr11_536130_C_G | chr11:536130 | 640 | 464 | 5,120 | 1.3e-5 |
| chr11_535103_G_A | chr11:535103 | -608 | 187 | 4,868 | 6.6e-6 |
| chr11_535911_A_G | chr11:535911 | -576 | -432 | -6,656 | 6.6e-6 |
| chr11_536084_C_T | chr11:536084 | 576 | 528 | 5,888 | 6.6e-5 |
| chr11_536010_T_A | chr11:536010 | -576 | 544 | 4,608 | 6.6e-6 |
| chr11_535158_G_A | chr11:535158 | 544 | 239 | 4,024 | 6.6e-6 |
| chr11_535926_G_T | chr11:535926 | 512 | 768 | 9,216 | 6.6e-6 |
| chr11_535112_G_A | chr11:535112 | 512 | 324 | 4,868 | 1.8e-2 |
| chr11_535162_C_T | chr11:535162 | 480 | 253 | 3,956 | 2.6e-5 |
| chr11_535920_C_T | chr11:535920 | 448 | 928 | 5,376 | 1.3e-5 |
| chr11_535921_C_T | chr11:535921 | 448 | 560 | 4,352 | 6.6e-6 |
| chr11_536047_C_T | chr11:536047 | 448 | 352 | 4,352 | 1.3e-5 |
| chr11_535113_G_A | chr11:535113 | 416 | 492 | 8,064 | 6.6e-6 |
| chr11_535903_G_A | chr11:535903 | 320 | 832 | 10,240 | 1.3e-5 |
| chr11_536036_G_A | chr11:536036 | 320 | 592 | 5,888 | 6.6e-6 |
| chr11_544236_G_C | chr11:544236 | 320 | 640 | 4,480 | 9.8e-5 |
| chr11_535855_G_A | chr11:535855 | 320 | 288 | 4,096 | 6.6e-6 |
| chr11_535111_C_T | chr11:535111 | 288 | 227 | 5,500 | 4.2e-4 |
| chr11_535721_G_A | chr11:535721 | 256 | 1,012 | 7,104 | 6.6e-6 |
| chr11_536064_T_G | chr11:536064 | -256 | -608 | -6,144 | 1.3e-5 |
| chr11_537484_T_C | chr11:537484 | 256 | -288 | 5,120 | 2.0e-5 |
| chr11_537406_G_A | chr11:537406 | -256 | 2,336 | 4,864 | 6.6e-6 |
| chr11_535851_C_A | chr11:535851 | 256 | 240 | 4,352 | 6.6e-6 |
| chr11_535777_G_T | chr11:535777 | -192 | 936 | 5,216 | 1.4e-1 |
| chr11_535741_G_A | chr11:535741 | -128 | 532 | 4,688 | 1.3e-5 |
| chr11_535875_C_G | chr11:535875 | -128 | 96 | 4,352 | 6.6e-6 |
| chr11_536032_G_A | chr11:536032 | 128 | 208 | 4,096 | 2.6e-5 |
| chr11_535092_G_A | chr11:535092 | 96 | 506 | 7,040 | 7.9e-5 |
| chr11_535917_C_T | chr11:535917 | 64 | 288 | 4,864 | 1.3e-5 |
| chr11_536080_C_T | chr11:536080 | -64 | 304 | 4,864 | 6.6e-6 |
| chr11_535876_G_A | chr11:535876 | 64 | 288 | 4,608 | 4.6e-5 |
| chr11_537493_G_T | chr11:537493 | 0 | 208 | 5,888 | 6.6e-6 |
| chr11_535839_C_T | chr11:535839 | 0 | 656 | 5,504 | 5.4e-4 |
| chr11_535902_C_T | chr11:535902 | 0 | 464 | 4,352 | 2.6e-5 |
Showing 200 of 200 in this window. Scores are the raw center bin Δ, ALT minus REF; click a column to sort.