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SCT

This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.

Scored variants near SCT

chr11:526,308..727,181, gene body plus 100 kb. Showing the strongest 200 by effect size.

Variant	Position	PXR	FXR	AhR	AF
chr11_537477_G_C	chr11:537477	-0.454	-0.457	-1.000	0.0013%
chr11_537452_C_G	chr11:537452	-0.323	-0.244	-0.988	0.0013%
chr11_553518_A_G	chr11:553518	-0.314	-0.433	-0.941	0.0013%
chr11_551758_G_C	chr11:551758	0.531	0.231	0.735	<0.001%
chr11_537477_G_A	chr11:537477	-0.416	-0.302	-0.906	<0.001%
chr11_537430_C_G	chr11:537430	0.238	0.113	0.871	0.0013%
chr11_536116_T_C	chr11:536116	-0.113	-0.105	-0.859	<0.001%
chr11_537452_C_A	chr11:537452	-0.248	-0.187	-0.800	0.0026%
chr11_551112_C_T	chr11:551112	0.072	0.161	0.788	0.0013%
chr11_537455_A_G	chr11:537455	-0.426	-0.246	-0.718	<0.001%
chr11_551122_C_T	chr11:551122	0.055	0.119	0.712	<0.001%
chr11_551116_C_T	chr11:551116	0.073	0.127	0.665	<0.001%
chr11_537435_C_G	chr11:537435	0.077	0.049	-0.659	0.0020%
chr11_553517_G_C	chr11:553517	0.215	0.240	0.624	<0.001%
chr11_535724_G_A	chr11:535724	0.082	0.114	0.592	0.0013%
chr11_551115_C_T	chr11:551115	0.061	0.106	0.585	0.0039%
chr11_535726_G_A	chr11:535726	0.060	0.097	0.564	0.014%
chr11_553516_G_A	chr11:553516	0.200	0.293	0.559	<0.001%
chr11_553553_G_A	chr11:553553	-0.224	-0.287	-0.559	<0.001%
chr11_535923_T_C	chr11:535923	-0.052	-0.089	-0.541	<0.001%
chr11_537404_T_C	chr11:537404	-0.123	-0.060	-0.541	<0.001%
chr11_537417_C_A	chr11:537417	-0.075	-0.096	-0.541	0.0039%
chr11_537605_G_C	chr11:537605	0.047	0.077	0.518	<0.001%
chr11_536113_A_C	chr11:536113	-0.065	-0.056	-0.506	<0.001%
chr11_553442_G_A	chr11:553442	0.176	0.227	0.506	0.0026%
chr11_553454_G_T	chr11:553454	0.217	0.339	0.500	<0.001%
chr11_537429_C_G	chr11:537429	0.125	0.117	0.494	<0.001%
chr11_535777_G_A	chr11:535777	0.018	0.148	0.493	<0.001%
chr11_551104_T_C	chr11:551104	-0.068	-0.069	-0.476	<0.001%
chr11_535903_G_A	chr11:535903	0.008	0.066	0.471	0.0013%
chr11_535928_C_T	chr11:535928	0.018	0.060	0.471	<0.001%
chr11_537513_C_G	chr11:537513	-0.196	-0.180	-0.459	0.0059%
chr11_553542_T_G	chr11:553542	-0.235	-0.362	-0.459	0.0033%
chr11_553545_G_A	chr11:553545	-0.196	-0.272	-0.453	<0.001%
chr11_551365_C_T	chr11:551365	0.047	0.077	0.447	0.014%
chr11_544243_G_A	chr11:544243	0.023	0.133	0.441	<0.001%
chr11_535542_C_G	chr11:535542	0.248	0.042	0.147	<0.001%
chr11_535098_T_G	chr11:535098	-0.026	-0.048	-0.431	24.5%
chr11_551368_C_G	chr11:551368	0.059	0.084	0.426	0.0013%
chr11_535926_G_T	chr11:535926	0.013	0.061	0.424	<0.001%
chr11_537435_C_T	chr11:537435	0.111	0.126	0.424	<0.001%
chr11_553543_C_T	chr11:553543	-0.205	-0.303	-0.424	0.0033%
chr11_535744_G_A	chr11:535744	0.236	0.223	0.407	0.0033%
chr11_535925_C_T	chr11:535925	0.018	0.058	0.412	<0.001%
chr11_536029_C_A	chr11:536029	0.025	0.023	0.412	0.264%
chr11_537550_G_A	chr11:537550	-0.153	-0.072	-0.412	<0.001%
chr11_535653_A_C	chr11:535653	-0.110	-0.118	-0.408	0.0013%
chr11_553443_G_A	chr11:553443	0.119	0.141	0.400	0.0026%
chr11_551348_C_A	chr11:551348	0.073	0.057	0.397	<0.001%
chr11_535095_T_C	chr11:535095	-0.077	-0.027	-0.395	<0.001%
chr11_537483_A_G	chr11:537483	-0.223	-0.198	0.106	<0.001%
chr11_551117_C_T	chr11:551117	0.054	0.077	0.394	<0.001%
chr11_537506_C_G	chr11:537506	-0.120	-0.049	-0.388	<0.001%
chr11_537554_A_G	chr11:537554	-0.165	-0.069	-0.388	<0.001%
chr11_535474_G_T	chr11:535474	0.215	0.002	0.023	0.113%
chr11_537418_G_A	chr11:537418	-0.050	-0.013	-0.376	<0.001%
chr11_537428_C_G	chr11:537428	0.165	0.093	0.376	<0.001%
chr11_537500_A_C	chr11:537500	-0.023	-0.032	0.376	0.0053%
chr11_535113_G_A	chr11:535113	0.011	0.039	0.371	<0.001%
chr11_551347_C_A	chr11:551347	0.034	0.069	0.368	<0.001%
chr11_535875_C_T	chr11:535875	0.017	0.046	0.365	<0.001%
chr11_551347_C_G	chr11:551347	0.032	0.058	0.362	0.0013%
chr11_535086_G_A	chr11:535086	0.022	0.036	0.355	0.0013%
chr11_536134_A_C	chr11:536134	-0.035	-0.053	-0.353	<0.001%
chr11_537519_A_G	chr11:537519	0.060	0.046	0.353	0.0026%
chr11_535089_G_A	chr11:535089	0.026	0.037	0.347	<0.001%
chr11_535128_G_A	chr11:535128	0.030	0.035	0.342	0.0053%
chr11_536141_C_A	chr11:536141	0.033	0.030	0.341	0.0013%
chr11_537488_G_C	chr11:537488	-0.088	-0.065	-0.341	0.012%
chr11_535553_G_T	chr11:535553	-0.027	-0.052	0.340	<0.001%
chr11_535087_C_T	chr11:535087	0.020	0.028	0.330	0.0020%
chr11_535929_G_A	chr11:535929	0.022	0.042	0.329	0.0013%
chr11_535721_G_A	chr11:535721	0.007	0.080	0.326	<0.001%
chr11_535092_G_A	chr11:535092	0.002	0.040	0.324	0.0079%
chr11_551339_C_G	chr11:551339	0.031	0.079	0.321	<0.001%
chr11_535154_G_A	chr11:535154	0.020	0.028	0.320	0.0020%
chr11_535599_G_T	chr11:535599	0.085	0.092	0.320	0.0013%
chr11_535118_G_A	chr11:535118	0.017	0.032	0.320	<0.001%
chr11_535141_C_T	chr11:535141	0.022	0.034	0.316	0.242%
chr11_537485_G_C	chr11:537485	-0.178	-0.263	-0.188	<0.001%
chr11_535911_A_G	chr11:535911	-0.015	-0.034	-0.306	<0.001%
chr11_537424_C_T	chr11:537424	-0.042	-0.048	-0.306	<0.001%
chr11_553563_G_A	chr11:553563	0.169	0.212	0.306	<0.001%
chr11_535739_C_T	chr11:535739	0.171	0.155	0.286	0.0020%
chr11_535143_G_A	chr11:535143	0.031	0.030	0.297	<0.001%
chr11_535752_G_T	chr11:535752	-0.050	0.022	0.294	<0.001%
chr11_537507_G_A	chr11:537507	-0.078	-0.043	-0.294	0.638%
chr11_544253_C_G	chr11:544253	-0.025	-0.067	-0.288	<0.001%
chr11_535489_G_A	chr11:535489	0.162	0.023	0.117	<0.001%
chr11_535463_G_A	chr11:535463	0.161	0.013	0.085	10.4%
chr11_535503_A_G	chr11:535503	-0.161	-0.014	-0.174	0.0020%
chr11_536064_T_G	chr11:536064	-0.007	-0.048	-0.282	0.0013%
chr11_537456_T_C	chr11:537456	-0.160	-0.020	0.129	<0.001%
chr11_551323_G_A	chr11:551323	0.050	0.005	-0.279	<0.001%
chr11_535649_C_T	chr11:535649	0.125	0.132	0.275	24.1%
chr11_535091_C_A	chr11:535091	0.023	0.020	0.274	<0.001%
chr11_535152_G_A	chr11:535152	0.019	0.037	0.271	<0.001%
chr11_536024_G_T	chr11:536024	0.035	0.015	0.271	0.0046%
chr11_536036_G_A	chr11:536036	0.008	0.047	0.271	<0.001%
chr11_536084_C_T	chr11:536084	0.015	0.042	0.271	0.0066%
chr11_537493_G_T	chr11:537493	0.000	0.016	0.271	<0.001%
chr11_553502_C_T	chr11:553502	-0.097	-0.124	-0.271	0.0020%
chr11_535671_G_T	chr11:535671	0.148	0.057	0.205	0.0013%
chr11_551338_C_T	chr11:551338	0.037	0.058	0.262	4.80%
chr11_535829_G_A	chr11:535829	0.073	0.044	0.259	0.0033%
chr11_535851_C_T	chr11:535851	-0.017	0.024	0.259	<0.001%
chr11_535996_G_A	chr11:535996	0.030	0.041	0.259	<0.001%
chr11_537395_T_A	chr11:537395	-0.055	-0.203	-0.259	<0.001%
chr11_537556_G_A	chr11:537556	0.103	0.048	0.259	<0.001%
chr11_537607_T_G	chr11:537607	0.050	0.060	-0.259	<0.001%
chr11_535088_G_T	chr11:535088	0.022	0.028	0.257	0.0013%
chr11_535647_C_T	chr11:535647	0.118	0.088	0.254	<0.001%
chr11_535518_G_A	chr11:535518	0.143	0.026	0.115	<0.001%
chr11_535839_C_T	chr11:535839	0.000	0.052	0.253	0.054%
chr11_535111_C_T	chr11:535111	0.007	0.018	0.253	0.042%
chr11_535824_G_A	chr11:535824	0.141	0.003	0.100	0.0020%
chr11_535555_C_A	chr11:535555	0.075	0.037	0.249	0.0013%
chr11_526325_C_T	chr11:526325	-0.087	-0.103	-0.247	0.0013%
chr11_535920_C_T	chr11:535920	0.012	0.074	0.247	0.0013%
chr11_537426_A_C	chr11:537426	0.063	0.063	0.247	<0.001%
chr11_537447_A_G	chr11:537447	-0.083	-0.038	-0.247	<0.001%
chr11_551196_C_G	chr11:551196	0.052	0.020	-0.247	<0.001%
chr11_535603_G_T	chr11:535603	0.138	0.048	0.183	<0.001%
chr11_535764_G_C	chr11:535764	-0.136	-0.039	-0.144	0.0013%
chr11_535171_C_A	chr11:535171	0.036	0.022	0.241	0.0013%
chr11_535541_G_A	chr11:535541	0.136	0.022	0.151	0.0020%
chr11_535777_G_T	chr11:535777	-0.005	0.074	0.240	14.0%
chr11_537476_C_A	chr11:537476	-0.135	-0.058	-0.082	<0.001%
chr11_535867_G_A	chr11:535867	0.095	0.105	0.235	<0.001%
chr11_536130_C_G	chr11:536130	0.017	0.037	0.235	0.0013%
chr11_537484_T_C	chr11:537484	0.007	-0.023	0.235	0.0020%
chr11_537568_C_G	chr11:537568	0.133	0.042	0.024	<0.001%
chr11_535581_A_C	chr11:535581	-0.073	-0.062	-0.233	<0.001%
chr11_535777_G_C	chr11:535777	-0.057	0.036	0.232	0.0033%
chr11_535823_G_T	chr11:535823	0.131	0.016	0.174	<0.001%
chr11_537501_C_T	chr11:537501	-0.131	-0.067	-0.094	0.0046%
chr11_535363_C_A	chr11:535363	-0.131	0.014	0.065	<0.001%
chr11_535335_C_T	chr11:535335	0.128	-0.007	0.028	0.0021%
chr11_553481_G_A	chr11:553481	-0.128	-0.161	-0.224	<0.001%
chr11_535171_C_T	chr11:535171	0.024	0.020	0.226	<0.001%
chr11_535103_G_A	chr11:535103	-0.016	0.015	0.224	<0.001%
chr11_535112_G_A	chr11:535112	0.013	0.026	0.224	1.84%
chr11_535893_C_T	chr11:535893	0.038	0.044	0.224	<0.001%
chr11_535917_C_T	chr11:535917	0.002	0.023	0.224	0.0013%
chr11_535959_C_T	chr11:535959	0.028	0.044	0.224	0.0013%
chr11_535965_C_T	chr11:535965	0.027	0.049	0.224	<0.001%
chr11_535972_C_A	chr11:535972	-0.025	0.005	0.224	<0.001%
chr11_536080_C_T	chr11:536080	-0.002	0.024	0.224	<0.001%
chr11_537406_G_A	chr11:537406	-0.007	0.185	0.224	<0.001%
chr11_537417_C_G	chr11:537417	-0.043	-0.047	-0.224	<0.001%
chr11_537432_C_T	chr11:537432	0.101	0.077	0.224	<0.001%
chr11_535369_G_A	chr11:535369	0.124	0.000	0.049	4.85%
chr11_535586_C_G	chr11:535586	-0.123	-0.045	-0.195	<0.001%
chr11_535741_G_A	chr11:535741	-0.003	0.042	0.215	0.0013%
chr11_535876_G_A	chr11:535876	0.002	0.023	0.212	0.0046%
chr11_535971_G_A	chr11:535971	0.020	0.016	0.212	0.0013%
chr11_536010_T_A	chr11:536010	-0.015	0.043	0.212	<0.001%
chr11_536120_C_G	chr11:536120	0.035	0.038	0.212	<0.001%
chr11_536218_C_T	chr11:536218	0.042	0.049	0.212	0.0059%
chr11_537411_G_C	chr11:537411	-0.057	-0.047	-0.212	<0.001%
chr11_544291_C_T	chr11:544291	-0.061	-0.045	-0.212	0.317%
chr11_551447_C_T	chr11:551447	0.108	0.126	0.212	0.0033%
chr11_535511_C_A	chr11:535511	0.117	0.014	0.061	0.0014%
chr11_535720_G_A	chr11:535720	0.116	0.042	0.183	0.0013%
chr11_544236_G_C	chr11:544236	0.008	0.051	0.206	0.0098%
chr11_535181_C_T	chr11:535181	0.038	0.008	0.205	0.0033%
chr11_535851_C_A	chr11:535851	0.007	0.019	0.200	<0.001%
chr11_535875_C_G	chr11:535875	-0.003	0.008	0.200	<0.001%
chr11_535902_C_T	chr11:535902	0.000	0.037	0.200	0.0026%
chr11_535921_C_T	chr11:535921	0.012	0.044	0.200	<0.001%
chr11_535991_C_T	chr11:535991	0.038	0.043	0.200	0.111%
chr11_536047_C_T	chr11:536047	0.012	0.028	0.200	0.0013%
chr11_536109_C_G	chr11:536109	0.027	0.024	0.200	0.0092%
chr11_536119_C_T	chr11:536119	0.037	0.032	0.200	<0.001%
chr11_536157_C_T	chr11:536157	0.020	0.039	0.200	0.0013%
chr11_537513_C_A	chr11:537513	-0.022	-0.008	-0.200	0.035%
chr11_544370_A_T	chr11:544370	0.061	0.049	0.200	0.0013%
chr11_553490_G_A	chr11:553490	-0.113	-0.103	0.041	0.0020%
chr11_535610_A_G	chr11:535610	-0.103	-0.100	-0.197	0.0013%
chr11_526508_C_T	chr11:526508	-0.036	-0.104	-0.197	<0.001%
chr11_553538_A_G	chr11:553538	-0.111	-0.136	-0.112	<0.001%
chr11_526337_G_A	chr11:526337	-0.062	-0.123	-0.194	0.0020%
chr11_535511_C_T	chr11:535511	0.110	0.025	0.091	0.0041%
chr11_535321_C_A	chr11:535321	0.108	0.002	0.107	0.0082%
chr11_535489_G_T	chr11:535489	0.108	0.012	0.080	0.0055%
chr11_535683_G_A	chr11:535683	-0.108	0.016	-0.038	<0.001%
chr11_535697_G_C	chr11:535697	0.108	0.095	0.084	<0.001%
chr11_535543_G_A	chr11:535543	0.107	0.047	0.124	<0.001%
chr11_535855_G_A	chr11:535855	0.008	0.023	0.188	<0.001%
chr11_535991_C_A	chr11:535991	0.020	0.042	0.188	<0.001%
chr11_536032_G_A	chr11:536032	0.003	0.016	0.188	0.0026%
chr11_536119_C_G	chr11:536119	0.045	0.033	0.188	<0.001%
chr11_536120_C_T	chr11:536120	0.020	0.027	0.188	<0.001%
chr11_535621_A_G	chr11:535621	-0.105	-0.076	-0.188	<0.001%
chr11_535496_C_T	chr11:535496	0.105	0.009	0.077	<0.001%
chr11_537634_G_A	chr11:537634	0.105	0.058	0.153	<0.001%
chr11_535158_G_A	chr11:535158	0.014	0.019	0.185	<0.001%
chr11_535162_C_T	chr11:535162	0.012	0.020	0.182	0.0026%
chr11_535506_G_A	chr11:535506	0.102	0.007	0.065	0.0088%
chr11_551760_C_T	chr11:551760	-0.102	0.044	-0.065	0.0013%

Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.