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SEMA3F
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near SEMA3F
chr3:50,055,057..50,289,075, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr3_50176645_A_G | chr3:50176645 | -0.077 | -0.140 | -0.582 | — |
| chr3_50176647_T_G | chr3:50176647 | -0.057 | -0.124 | -0.447 | 0.0013% |
| chr3_50176653_G_C | chr3:50176653 | 0.035 | 0.090 | 0.412 | — |
| chr3_50176654_G_C | chr3:50176654 | 0.040 | 0.082 | 0.394 | — |
| chr3_50176653_G_T | chr3:50176653 | 0.045 | 0.098 | 0.376 | — |
| chr3_50089178_C_A | chr3:50089178 | -0.206 | 0.104 | -0.059 | — |
| chr3_50089084_C_G | chr3:50089084 | 0.203 | 0.069 | 0.200 | — |
| chr3_50176653_G_A | chr3:50176653 | 0.043 | 0.095 | 0.359 | — |
| chr3_50089214_T_C | chr3:50089214 | 0.200 | 0.135 | 0.165 | — |
| chr3_50176659_G_C | chr3:50176659 | 0.033 | 0.095 | 0.353 | — |
| chr3_50176673_T_G | chr3:50176673 | -0.030 | -0.075 | -0.347 | — |
| chr3_50089215_G_C | chr3:50089215 | -0.190 | -0.107 | -0.341 | — |
| chr3_50089035_T_G | chr3:50089035 | -0.190 | -0.063 | 0.200 | — |
| chr3_50176664_G_C | chr3:50176664 | 0.022 | 0.080 | 0.329 | — |
| chr3_50089034_G_T | chr3:50089034 | -0.180 | -0.013 | 0.000 | — |
| chr3_50089144_G_A | chr3:50089144 | 0.180 | 0.053 | 0.082 | — |
| chr3_50176654_G_T | chr3:50176654 | 0.037 | 0.085 | 0.318 | <0.001% |
| chr3_50176655_G_T | chr3:50176655 | 0.030 | 0.090 | 0.312 | — |
| chr3_50089176_G_C | chr3:50089176 | -0.116 | 0.061 | -0.306 | — |
| chr3_50089214_T_G | chr3:50089214 | -0.156 | -0.091 | -0.306 | — |
| chr3_50176655_G_A | chr3:50176655 | 0.027 | 0.080 | 0.300 | — |
| chr3_50176664_G_T | chr3:50176664 | 0.028 | 0.085 | 0.294 | — |
| chr3_50176665_G_C | chr3:50176665 | 0.013 | 0.066 | 0.294 | — |
| chr3_50176665_G_T | chr3:50176665 | 0.022 | 0.081 | 0.294 | — |
| chr3_50176657_G_T | chr3:50176657 | 0.032 | 0.082 | 0.288 | — |
| chr3_50089118_G_C | chr3:50089118 | -0.073 | 0.030 | 0.282 | — |
| chr3_50089168_A_G | chr3:50089168 | -0.126 | -0.020 | -0.282 | — |
| chr3_50089174_G_A | chr3:50089174 | 0.160 | -0.028 | 0.071 | — |
| chr3_50176652_G_C | chr3:50176652 | 0.018 | 0.057 | 0.282 | <0.001% |
| chr3_50176654_G_A | chr3:50176654 | 0.028 | 0.080 | 0.282 | — |
| chr3_50176655_G_C | chr3:50176655 | 0.022 | 0.072 | 0.282 | — |
| chr3_50176660_C_G | chr3:50176660 | -0.033 | -0.051 | -0.282 | — |
| chr3_50176667_T_G | chr3:50176667 | -0.045 | -0.081 | -0.282 | — |
| chr3_50176672_C_G | chr3:50176672 | -0.015 | -0.070 | -0.282 | — |
| chr3_50176657_G_A | chr3:50176657 | 0.032 | 0.082 | 0.276 | — |
| chr3_50176658_G_C | chr3:50176658 | 0.023 | 0.065 | 0.276 | — |
| chr3_50176662_C_G | chr3:50176662 | -0.032 | -0.071 | -0.276 | — |
| chr3_50176665_G_A | chr3:50176665 | 0.017 | 0.076 | 0.276 | — |
| chr3_50176679_C_G | chr3:50176679 | -0.028 | -0.060 | -0.276 | — |
| chr3_50176664_G_A | chr3:50176664 | 0.027 | 0.082 | 0.271 | — |
| chr3_50089031_T_A | chr3:50089031 | -0.150 | 0.015 | 0.129 | — |
| chr3_50089031_T_C | chr3:50089031 | -0.150 | 0.013 | 0.224 | — |
| chr3_50176656_T_G | chr3:50176656 | -0.047 | -0.036 | -0.265 | — |
| chr3_50176659_G_T | chr3:50176659 | 0.035 | 0.085 | 0.265 | — |
| chr3_50176666_G_C | chr3:50176666 | 0.018 | 0.066 | 0.265 | — |
| chr3_50089032_A_C | chr3:50089032 | -0.070 | 0.020 | 0.259 | — |
| chr3_50089033_A_C | chr3:50089033 | -0.100 | 0.018 | 0.259 | — |
| chr3_50089075_G_T | chr3:50089075 | 0.146 | 0.013 | -0.047 | — |
| chr3_50089120_T_C | chr3:50089120 | 0.023 | 0.020 | 0.259 | — |
| chr3_50089144_G_T | chr3:50089144 | 0.146 | 0.048 | 0.106 | — |
| chr3_50089178_C_T | chr3:50089178 | -0.146 | 0.036 | -0.212 | — |
| chr3_50176657_G_C | chr3:50176657 | 0.032 | 0.069 | 0.259 | — |
| chr3_50176658_G_T | chr3:50176658 | 0.027 | 0.077 | 0.259 | — |
| chr3_50089084_C_T | chr3:50089084 | 0.143 | 0.033 | 0.000 | — |
| chr3_50089177_C_T | chr3:50089177 | -0.143 | 0.074 | -0.165 | — |
| chr3_50176652_G_T | chr3:50176652 | 0.023 | 0.062 | 0.253 | 0.0013% |
| chr3_50176658_G_A | chr3:50176658 | 0.030 | 0.076 | 0.253 | — |
| chr3_50089051_A_G | chr3:50089051 | 0.007 | 0.008 | 0.247 | — |
| chr3_50089119_A_G | chr3:50089119 | 0.000 | 0.030 | 0.247 | — |
| chr3_50089177_C_G | chr3:50089177 | -0.140 | 0.061 | -0.106 | — |
| chr3_50089183_C_T | chr3:50089183 | 0.067 | -0.107 | -0.247 | — |
| chr3_50176659_G_A | chr3:50176659 | 0.033 | 0.088 | 0.247 | — |
| chr3_50176675_G_A | chr3:50176675 | 0.018 | 0.074 | 0.247 | — |
| chr3_50089172_C_T | chr3:50089172 | -0.138 | 0.043 | -0.235 | — |
| chr3_50089035_T_A | chr3:50089035 | -0.136 | -0.033 | -0.012 | — |
| chr3_50089144_G_C | chr3:50089144 | 0.136 | 0.008 | 0.141 | — |
| chr3_50089190_C_A | chr3:50089190 | -0.136 | -0.028 | -0.141 | — |
| chr3_50089193_G_C | chr3:50089193 | -0.136 | -0.036 | -0.106 | — |
| chr3_50176643_G_T | chr3:50176643 | 0.008 | 0.070 | 0.241 | — |
| chr3_50176666_G_A | chr3:50176666 | 0.018 | 0.075 | 0.241 | — |
| chr3_50089028_G_A | chr3:50089028 | 0.133 | 0.023 | 0.035 | — |
| chr3_50089091_C_A | chr3:50089091 | 0.027 | -0.043 | -0.235 | — |
| chr3_50089197_T_A | chr3:50089197 | 0.033 | 0.033 | 0.235 | — |
| chr3_50176643_G_C | chr3:50176643 | 0.025 | 0.063 | 0.235 | — |
| chr3_50176675_G_C | chr3:50176675 | 0.028 | 0.067 | 0.235 | — |
| chr3_50176676_G_T | chr3:50176676 | 0.030 | 0.072 | 0.235 | — |
| chr3_50176677_G_C | chr3:50176677 | 0.028 | 0.067 | 0.235 | — |
| chr3_50176677_G_T | chr3:50176677 | 0.035 | 0.076 | 0.235 | — |
| chr3_50089177_C_A | chr3:50089177 | -0.131 | 0.107 | -0.188 | — |
| chr3_50176644_G_T | chr3:50176644 | 0.018 | 0.053 | 0.229 | — |
| chr3_50089192_A_C | chr3:50089192 | -0.128 | -0.043 | -0.071 | — |
| chr3_50089003_C_G | chr3:50089003 | -0.126 | -0.010 | -0.212 | 0.0053% |
| chr3_50089029_G_C | chr3:50089029 | -0.100 | 0.000 | 0.224 | 0.0085% |
| chr3_50089033_A_T | chr3:50089033 | -0.126 | 0.003 | 0.129 | — |
| chr3_50089143_G_C | chr3:50089143 | 0.126 | 0.038 | 0.071 | — |
| chr3_50089145_G_A | chr3:50089145 | 0.126 | 0.005 | 0.047 | — |
| chr3_50089175_C_G | chr3:50089175 | -0.110 | 0.048 | -0.224 | — |
| chr3_50089178_C_G | chr3:50089178 | -0.126 | 0.066 | -0.082 | — |
| chr3_50176644_G_A | chr3:50176644 | 0.015 | 0.058 | 0.224 | — |
| chr3_50176651_G_C | chr3:50176651 | 0.025 | 0.052 | 0.224 | — |
| chr3_50176676_G_C | chr3:50176676 | 0.025 | 0.053 | 0.224 | — |
| chr3_50089031_T_G | chr3:50089031 | -0.123 | 0.028 | 0.165 | — |
| chr3_50089033_A_G | chr3:50089033 | -0.123 | -0.028 | 0.212 | — |
| chr3_50089147_C_T | chr3:50089147 | 0.123 | 0.028 | -0.012 | — |
| chr3_50176672_C_A | chr3:50176672 | -0.008 | -0.047 | -0.218 | — |
| chr3_50176676_G_A | chr3:50176676 | 0.023 | 0.070 | 0.218 | — |
| chr3_50089153_T_C | chr3:50089153 | 0.007 | -0.003 | 0.212 | — |
| chr3_50089190_C_G | chr3:50089190 | 0.120 | 0.053 | 0.106 | — |
| chr3_50089220_G_T | chr3:50089220 | -0.057 | -0.051 | -0.212 | — |
| chr3_50176677_G_A | chr3:50176677 | 0.035 | 0.075 | 0.212 | 0.0013% |
| chr3_50089143_G_A | chr3:50089143 | 0.116 | 0.058 | 0.082 | — |
| chr3_50089156_C_A | chr3:50089156 | 0.116 | 0.053 | 0.059 | — |
| chr3_50176666_G_T | chr3:50176666 | 0.017 | 0.070 | 0.206 | — |
| chr3_50176671_C_G | chr3:50176671 | -0.012 | -0.051 | -0.206 | — |
| chr3_50176675_G_T | chr3:50176675 | 0.030 | 0.060 | 0.206 | — |
| chr3_50088992_G_C | chr3:50088992 | 0.063 | -0.003 | 0.200 | <0.001% |
| chr3_50088993_C_G | chr3:50088993 | -0.113 | 0.015 | -0.176 | — |
| chr3_50089020_T_C | chr3:50089020 | -0.017 | -0.013 | 0.200 | — |
| chr3_50089022_T_G | chr3:50089022 | -0.003 | -0.003 | 0.200 | — |
| chr3_50089028_G_C | chr3:50089028 | 0.020 | -0.003 | 0.200 | — |
| chr3_50089029_G_A | chr3:50089029 | -0.113 | -0.010 | 0.012 | — |
| chr3_50089030_G_C | chr3:50089030 | -0.103 | 0.023 | 0.200 | — |
| chr3_50089032_A_T | chr3:50089032 | -0.097 | -0.008 | 0.200 | — |
| chr3_50089103_C_A | chr3:50089103 | -0.023 | -0.020 | -0.200 | — |
| chr3_50089172_C_G | chr3:50089172 | -0.063 | -0.008 | -0.200 | — |
| chr3_50176652_G_A | chr3:50176652 | 0.018 | 0.060 | 0.200 | — |
| chr3_50089034_G_A | chr3:50089034 | -0.110 | -0.013 | 0.106 | — |
| chr3_50089141_G_C | chr3:50089141 | 0.110 | 0.051 | 0.153 | — |
| chr3_50176643_G_A | chr3:50176643 | 0.027 | 0.069 | 0.194 | 0.0020% |
| chr3_50176663_G_A | chr3:50176663 | 0.013 | 0.057 | 0.194 | 0.0033% |
| chr3_50088997_G_A | chr3:50088997 | -0.106 | -0.018 | -0.059 | — |
| chr3_50089003_C_T | chr3:50089003 | 0.097 | 0.003 | -0.188 | — |
| chr3_50089029_G_T | chr3:50089029 | -0.106 | -0.020 | 0.082 | — |
| chr3_50089036_G_A | chr3:50089036 | 0.106 | 0.033 | -0.035 | — |
| chr3_50089129_G_T | chr3:50089129 | -0.033 | 0.056 | 0.188 | — |
| chr3_50089162_C_T | chr3:50089162 | -0.027 | 0.025 | -0.188 | 0.013% |
| chr3_50089175_C_T | chr3:50089175 | -0.106 | 0.091 | -0.059 | <0.001% |
| chr3_50089205_T_G | chr3:50089205 | 0.093 | 0.074 | 0.188 | — |
| chr3_50176649_T_G | chr3:50176649 | -0.030 | -0.055 | -0.188 | — |
| chr3_50176671_C_T | chr3:50176671 | -0.005 | -0.027 | -0.188 | — |
| chr3_50089171_G_T | chr3:50089171 | -0.105 | 0.036 | -0.141 | — |
| chr3_50176642_G_C | chr3:50176642 | 0.003 | 0.044 | 0.182 | — |
| chr3_50176663_G_C | chr3:50176663 | 0.013 | 0.047 | 0.182 | — |
| chr3_50088990_G_C | chr3:50088990 | 0.100 | 0.013 | 0.082 | — |
| chr3_50088995_C_T | chr3:50088995 | 0.100 | 0.003 | -0.071 | — |
| chr3_50089035_T_C | chr3:50089035 | -0.100 | -0.015 | 0.118 | — |
| chr3_50089059_T_C | chr3:50089059 | 0.000 | 0.000 | 0.176 | <0.001% |
| chr3_50089083_C_G | chr3:50089083 | 0.100 | 0.025 | 0.035 | — |
| chr3_50089097_T_G | chr3:50089097 | -0.027 | 0.015 | 0.176 | — |
| chr3_50089098_G_A | chr3:50089098 | 0.100 | -0.117 | 0.059 | — |
| chr3_50089099_T_A | chr3:50089099 | 0.023 | 0.005 | -0.176 | — |
| chr3_50089102_G_A | chr3:50089102 | -0.037 | -0.010 | -0.176 | — |
| chr3_50089146_G_A | chr3:50089146 | 0.100 | 0.015 | -0.024 | — |
| chr3_50089148_T_C | chr3:50089148 | 0.100 | 0.015 | 0.165 | — |
| chr3_50089154_A_G | chr3:50089154 | 0.027 | 0.003 | 0.176 | — |
| chr3_50089175_C_A | chr3:50089175 | -0.100 | 0.051 | -0.141 | — |
| chr3_50089190_C_T | chr3:50089190 | -0.087 | -0.051 | -0.176 | — |
| chr3_50089208_A_G | chr3:50089208 | -0.013 | 0.033 | 0.176 | — |
| chr3_50089215_G_A | chr3:50089215 | -0.047 | -0.038 | -0.176 | — |
| chr3_50088989_G_C | chr3:50088989 | 0.097 | -0.008 | 0.059 | — |
| chr3_50089145_G_C | chr3:50089145 | 0.097 | -0.036 | 0.118 | — |
| chr3_50089146_G_C | chr3:50089146 | 0.097 | 0.025 | 0.118 | — |
| chr3_50089171_G_C | chr3:50089171 | -0.097 | 0.046 | 0.035 | — |
| chr3_50089193_G_T | chr3:50089193 | -0.097 | -0.061 | -0.153 | — |
| chr3_50089211_G_T | chr3:50089211 | 0.097 | 0.005 | 0.012 | — |
| chr3_50089214_T_A | chr3:50089214 | 0.097 | 0.051 | 0.047 | — |
| chr3_50176651_G_T | chr3:50176651 | 0.023 | 0.055 | 0.171 | — |
| chr3_50176672_C_T | chr3:50176672 | -0.007 | -0.039 | -0.171 | — |
| chr3_50089034_G_C | chr3:50089034 | -0.080 | 0.013 | 0.165 | — |
| chr3_50089060_A_C | chr3:50089060 | 0.013 | 0.008 | 0.165 | — |
| chr3_50089090_C_T | chr3:50089090 | 0.023 | 0.013 | -0.165 | <0.001% |
| chr3_50089094_C_T | chr3:50089094 | 0.023 | -0.003 | -0.165 | — |
| chr3_50089106_C_A | chr3:50089106 | 0.030 | 0.063 | 0.165 | — |
| chr3_50089131_C_G | chr3:50089131 | -0.037 | 0.005 | -0.165 | 0.0033% |
| chr3_50089142_A_C | chr3:50089142 | 0.080 | 0.038 | 0.165 | — |
| chr3_50089146_G_T | chr3:50089146 | -0.020 | -0.023 | -0.165 | — |
| chr3_50089173_C_A | chr3:50089173 | -0.093 | 0.091 | -0.071 | — |
| chr3_50089173_C_T | chr3:50089173 | -0.083 | 0.033 | -0.165 | 0.0053% |
| chr3_50089174_G_C | chr3:50089174 | 0.093 | 0.033 | -0.094 | — |
| chr3_50089187_T_A | chr3:50089187 | -0.057 | -0.036 | -0.165 | — |
| chr3_50089188_T_G | chr3:50089188 | -0.093 | -0.036 | 0.129 | — |
| chr3_50089199_T_G | chr3:50089199 | 0.093 | 0.025 | 0.141 | — |
| chr3_50089210_A_G | chr3:50089210 | -0.070 | -0.038 | -0.165 | — |
| chr3_50176644_G_C | chr3:50176644 | 0.012 | 0.038 | 0.165 | <0.001% |
| chr3_50089030_G_T | chr3:50089030 | -0.090 | 0.023 | 0.141 | 0.0013% |
| chr3_50176650_A_G | chr3:50176650 | -0.027 | -0.042 | -0.159 | — |
| chr3_50088995_C_A | chr3:50088995 | -0.017 | 0.008 | -0.153 | — |
| chr3_50089002_G_T | chr3:50089002 | -0.017 | -0.020 | -0.153 | — |
| chr3_50089020_T_A | chr3:50089020 | 0.017 | 0.005 | 0.153 | — |
| chr3_50089020_T_G | chr3:50089020 | -0.010 | 0.003 | 0.153 | — |
| chr3_50089021_C_G | chr3:50089021 | 0.010 | 0.020 | 0.153 | — |
| chr3_50089030_G_A | chr3:50089030 | -0.087 | 0.008 | 0.059 | — |
| chr3_50089051_A_C | chr3:50089051 | -0.050 | 0.051 | 0.153 | — |
| chr3_50089057_G_T | chr3:50089057 | 0.087 | 0.000 | 0.035 | — |
| chr3_50089058_G_C | chr3:50089058 | 0.050 | 0.018 | 0.153 | — |
| chr3_50089059_T_A | chr3:50089059 | 0.000 | 0.018 | 0.153 | — |
| chr3_50089073_T_G | chr3:50089073 | -0.053 | -0.023 | 0.153 | — |
| chr3_50089083_C_A | chr3:50089083 | 0.087 | 0.058 | 0.035 | — |
| chr3_50089085_C_A | chr3:50089085 | 0.023 | 0.005 | 0.153 | 0.0046% |
| chr3_50089093_C_G | chr3:50089093 | -0.037 | 0.003 | 0.153 | — |
| chr3_50089143_G_T | chr3:50089143 | 0.087 | 0.028 | -0.035 | — |
| chr3_50089145_G_T | chr3:50089145 | 0.087 | 0.000 | -0.035 | — |
| chr3_50089156_C_G | chr3:50089156 | 0.060 | 0.056 | 0.153 | — |
| chr3_50089162_C_A | chr3:50089162 | -0.050 | 0.020 | -0.153 | — |
| chr3_50089181_T_G | chr3:50089181 | 0.027 | 0.020 | 0.153 | — |
| chr3_50089188_T_C | chr3:50089188 | -0.087 | -0.038 | 0.082 | — |
| chr3_50089192_A_T | chr3:50089192 | -0.087 | -0.033 | -0.035 | — |
| chr3_50089203_T_A | chr3:50089203 | 0.087 | -0.005 | 0.035 | — |
| chr3_50089209_G_T | chr3:50089209 | -0.040 | -0.041 | -0.153 | — |
| chr3_50089217_C_G | chr3:50089217 | 0.087 | 0.020 | 0.059 | — |
Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.