Home / Gene
SETD9
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near SETD9
chr5:56,809,259..57,028,899, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr5_56814933_T_A | chr5:56814933 | -0.228 | -0.555 | -1.000 | — |
| chr5_56814932_T_C | chr5:56814932 | -0.270 | -0.624 | -1.000 | — |
| chr5_56814932_T_G | chr5:56814932 | -0.303 | -0.626 | -1.000 | — |
| chr5_56814937_T_G | chr5:56814937 | -0.260 | -0.539 | -1.000 | — |
| chr5_56814934_C_A | chr5:56814934 | -0.218 | -0.578 | -1.000 | 0.046% |
| chr5_56814933_T_G | chr5:56814933 | -0.251 | -0.568 | -1.000 | — |
| chr5_56814932_T_A | chr5:56814932 | -0.201 | -0.638 | -1.000 | — |
| chr5_56814931_T_C | chr5:56814931 | -0.183 | -0.549 | -1.000 | — |
| chr5_56814931_T_G | chr5:56814931 | -0.190 | -0.556 | -1.000 | — |
| chr5_56814938_T_G | chr5:56814938 | -0.223 | -0.551 | -1.000 | — |
| chr5_56814934_C_G | chr5:56814934 | -0.206 | -0.579 | -1.000 | <0.001% |
| chr5_56814931_T_A | chr5:56814931 | -0.166 | -0.557 | -1.000 | — |
| chr5_56814937_T_C | chr5:56814937 | -0.243 | -0.500 | -1.000 | — |
| chr5_56814934_C_T | chr5:56814934 | -0.215 | -0.520 | -1.000 | — |
| chr5_56814930_C_A | chr5:56814930 | -0.238 | -0.485 | -1.000 | — |
| chr5_56814935_G_C | chr5:56814935 | -0.250 | -0.512 | -1.000 | — |
| chr5_56814938_T_C | chr5:56814938 | -0.210 | -0.471 | -1.000 | — |
| chr5_56814937_T_A | chr5:56814937 | -0.201 | -0.444 | -1.000 | — |
| chr5_56814939_T_A | chr5:56814939 | -0.196 | -0.468 | -1.000 | — |
| chr5_56814939_T_G | chr5:56814939 | -0.193 | -0.484 | -1.000 | — |
| chr5_56814930_C_T | chr5:56814930 | -0.211 | -0.436 | -1.000 | — |
| chr5_56814933_T_C | chr5:56814933 | -0.226 | -0.424 | -1.000 | — |
| chr5_56814938_T_A | chr5:56814938 | -0.165 | -0.414 | -1.000 | — |
| chr5_56814935_G_T | chr5:56814935 | -0.200 | -0.402 | -1.000 | — |
| chr5_56814929_G_T | chr5:56814929 | -0.205 | -0.277 | -1.000 | — |
| chr5_56814967_C_G | chr5:56814967 | -0.013 | -0.047 | 1.000 | — |
| chr5_56814972_C_G | chr5:56814972 | 0.519 | -0.044 | 0.176 | — |
| chr5_56815223_C_A | chr5:56815223 | 0.063 | -0.114 | 0.871 | — |
| chr5_56814929_G_C | chr5:56814929 | -0.143 | -0.136 | -0.812 | <0.001% |
| chr5_56814928_T_G | chr5:56814928 | -0.150 | -0.269 | -0.759 | — |
| chr5_56815220_T_C | chr5:56815220 | -0.220 | -0.245 | -0.759 | — |
| chr5_56815223_C_G | chr5:56815223 | 0.047 | -0.070 | 0.682 | — |
| chr5_56814939_T_C | chr5:56814939 | -0.166 | -0.201 | -0.641 | — |
| chr5_56815015_C_G | chr5:56815015 | 0.356 | 0.195 | 0.359 | <0.001% |
| chr5_56814969_G_A | chr5:56814969 | 0.348 | -0.005 | 0.388 | — |
| chr5_56814929_G_A | chr5:56814929 | 0.245 | 0.174 | 0.612 | — |
| chr5_56814967_C_A | chr5:56814967 | 0.007 | -0.006 | 0.594 | — |
| chr5_56815222_C_T | chr5:56815222 | 0.293 | -0.098 | 0.571 | <0.001% |
| chr5_56814966_C_T | chr5:56814966 | 0.025 | 0.000 | 0.547 | — |
| chr5_56815221_A_G | chr5:56815221 | 0.296 | -0.184 | 0.176 | — |
| chr5_56814968_T_A | chr5:56814968 | 0.068 | 0.008 | 0.518 | — |
| chr5_56815213_C_G | chr5:56815213 | 0.260 | 0.098 | 0.518 | — |
| chr5_56814968_T_C | chr5:56814968 | 0.115 | -0.057 | 0.512 | — |
| chr5_56814965_A_G | chr5:56814965 | 0.063 | -0.096 | 0.500 | 0.0026% |
| chr5_56814964_C_G | chr5:56814964 | 0.033 | -0.023 | 0.482 | — |
| chr5_56814956_C_T | chr5:56814956 | 0.263 | 0.015 | 0.000 | 0.0039% |
| chr5_56815189_A_T | chr5:56815189 | 0.047 | 0.074 | 0.459 | <0.001% |
| chr5_56815224_T_C | chr5:56815224 | 0.253 | -0.154 | -0.012 | 0.0092% |
| chr5_56814968_T_G | chr5:56814968 | 0.042 | -0.052 | 0.441 | — |
| chr5_56815221_A_T | chr5:56815221 | 0.130 | -0.063 | 0.441 | — |
| chr5_56814946_G_C | chr5:56814946 | 0.065 | -0.008 | 0.435 | <0.001% |
| chr5_56815217_G_A | chr5:56815217 | 0.113 | 0.180 | 0.429 | <0.001% |
| chr5_56815222_C_A | chr5:56815222 | 0.243 | -0.088 | 0.312 | — |
| chr5_56814948_C_T | chr5:56814948 | 0.050 | 0.001 | -0.424 | — |
| chr5_56815210_C_A | chr5:56815210 | 0.033 | 0.064 | 0.424 | — |
| chr5_56814966_C_G | chr5:56814966 | 0.087 | -0.072 | 0.418 | — |
| chr5_56814983_G_T | chr5:56814983 | -0.090 | -0.140 | -0.418 | — |
| chr5_56814971_G_C | chr5:56814971 | 0.235 | -0.016 | 0.153 | — |
| chr5_56814956_C_G | chr5:56814956 | 0.231 | -0.003 | -0.053 | — |
| chr5_56815224_T_A | chr5:56815224 | 0.230 | -0.139 | 0.271 | — |
| chr5_56814951_C_G | chr5:56814951 | -0.226 | -0.130 | -0.312 | — |
| chr5_56814969_G_C | chr5:56814969 | 0.030 | 0.025 | 0.400 | — |
| chr5_56815215_G_T | chr5:56815215 | 0.106 | 0.069 | 0.400 | — |
| chr5_56815223_C_T | chr5:56815223 | 0.150 | -0.090 | 0.394 | — |
| chr5_56815222_C_G | chr5:56815222 | 0.213 | -0.157 | 0.176 | — |
| chr5_56814927_T_C | chr5:56814927 | 0.205 | 0.015 | -0.182 | — |
| chr5_56814969_G_T | chr5:56814969 | -0.058 | 0.022 | 0.359 | — |
| chr5_56814928_T_A | chr5:56814928 | -0.025 | -0.135 | -0.353 | — |
| chr5_56814940_G_A | chr5:56814940 | -0.043 | -0.089 | -0.347 | — |
| chr5_56814944_C_A | chr5:56814944 | -0.080 | -0.049 | -0.347 | — |
| chr5_56814966_C_A | chr5:56814966 | 0.033 | -0.016 | 0.347 | — |
| chr5_56815014_A_C | chr5:56815014 | -0.065 | -0.093 | -0.341 | — |
| chr5_56815135_C_A | chr5:56815135 | 0.186 | 0.043 | 0.141 | — |
| chr5_56815204_C_G | chr5:56815204 | 0.186 | -0.059 | -0.118 | — |
| chr5_56815225_G_A | chr5:56815225 | 0.156 | -0.026 | 0.329 | — |
| chr5_56814936_C_G | chr5:56814936 | 0.072 | 0.103 | 0.324 | — |
| chr5_56814953_G_C | chr5:56814953 | 0.183 | -0.051 | 0.088 | — |
| chr5_56814965_A_T | chr5:56814965 | 0.002 | -0.081 | 0.324 | — |
| chr5_56814972_C_T | chr5:56814972 | 0.028 | 0.027 | 0.324 | — |
| chr5_56815170_C_G | chr5:56815170 | -0.183 | -0.075 | 0.041 | — |
| chr5_56814956_C_A | chr5:56814956 | 0.171 | 0.057 | 0.312 | — |
| chr5_56814967_C_T | chr5:56814967 | -0.045 | 0.006 | 0.312 | — |
| chr5_56815024_G_T | chr5:56815024 | 0.176 | 0.066 | 0.282 | — |
| chr5_56815231_G_A | chr5:56815231 | 0.015 | 0.032 | 0.312 | 0.017% |
| chr5_56815177_G_T | chr5:56815177 | -0.173 | -0.066 | -0.106 | — |
| chr5_56814959_G_T | chr5:56814959 | 0.063 | 0.043 | 0.300 | — |
| chr5_56814994_G_C | chr5:56814994 | -0.057 | 0.067 | -0.300 | — |
| chr5_56815025_C_A | chr5:56815025 | -0.018 | -0.032 | -0.300 | — |
| chr5_56815214_C_A | chr5:56815214 | 0.027 | 0.062 | 0.300 | — |
| chr5_56815003_C_A | chr5:56815003 | 0.168 | 0.126 | 0.276 | — |
| chr5_56814915_C_A | chr5:56814915 | -0.060 | -0.028 | -0.294 | 0.177% |
| chr5_56815225_G_T | chr5:56815225 | 0.093 | -0.043 | 0.294 | — |
| chr5_56815200_G_A | chr5:56815200 | 0.163 | 0.083 | 0.212 | 0.0026% |
| chr5_56815218_A_G | chr5:56815218 | -0.077 | -0.056 | -0.288 | — |
| chr5_56814959_G_A | chr5:56814959 | 0.160 | -0.001 | -0.024 | — |
| chr5_56815193_T_G | chr5:56815193 | 0.140 | -0.087 | -0.282 | — |
| chr5_56815225_G_C | chr5:56815225 | 0.126 | -0.088 | 0.282 | — |
| chr5_56814961_C_G | chr5:56814961 | -0.158 | -0.008 | -0.065 | — |
| chr5_56815128_C_A | chr5:56815128 | 0.078 | 0.014 | 0.276 | — |
| chr5_56815183_C_A | chr5:56815183 | 0.013 | 0.096 | 0.276 | — |
| chr5_56815208_T_C | chr5:56815208 | 0.156 | -0.072 | -0.235 | — |
| chr5_56815213_C_A | chr5:56815213 | 0.030 | 0.054 | 0.276 | — |
| chr5_56814945_A_T | chr5:56814945 | 0.155 | 0.012 | 0.094 | — |
| chr5_56814598_C_T | chr5:56814598 | 0.070 | 0.076 | 0.271 | 0.021% |
| chr5_56814894_T_C | chr5:56814894 | -0.020 | 0.107 | 0.271 | <0.001% |
| chr5_56814902_G_T | chr5:56814902 | -0.013 | -0.041 | -0.271 | <0.001% |
| chr5_56815219_C_A | chr5:56815219 | 0.057 | 0.036 | 0.271 | — |
| chr5_56815017_G_T | chr5:56815017 | 0.008 | 0.085 | -0.259 | — |
| chr5_56815126_T_C | chr5:56815126 | -0.048 | 0.044 | -0.259 | — |
| chr5_56815183_C_T | chr5:56815183 | -0.043 | 0.032 | 0.259 | <0.001% |
| chr5_56815210_C_T | chr5:56815210 | 0.003 | 0.049 | 0.259 | <0.001% |
| chr5_56815227_C_T | chr5:56815227 | 0.002 | 0.050 | 0.259 | 0.0013% |
| chr5_56814927_T_A | chr5:56814927 | -0.030 | -0.160 | -0.253 | — |
| chr5_56815181_T_G | chr5:56815181 | -0.010 | -0.041 | -0.253 | — |
| chr5_56815192_C_A | chr5:56815192 | -0.143 | -0.058 | -0.159 | 0.0020% |
| chr5_56814964_C_A | chr5:56814964 | 0.007 | 0.010 | 0.247 | — |
| chr5_56814975_C_G | chr5:56814975 | -0.033 | 0.058 | 0.247 | — |
| chr5_56814990_C_G | chr5:56814990 | 0.140 | 0.027 | -0.018 | — |
| chr5_56815004_C_G | chr5:56815004 | 0.140 | -0.034 | 0.159 | 0.0020% |
| chr5_56815196_T_C | chr5:56815196 | 0.077 | -0.056 | -0.247 | — |
| chr5_56815224_T_G | chr5:56815224 | 0.140 | -0.173 | -0.029 | 0.0026% |
| chr5_56815228_G_A | chr5:56815228 | 0.101 | 0.036 | 0.247 | 0.0013% |
| chr5_56815111_A_T | chr5:56815111 | 0.138 | -0.030 | 0.159 | — |
| chr5_56815114_G_A | chr5:56815114 | -0.035 | -0.077 | -0.241 | — |
| chr5_56815168_A_T | chr5:56815168 | -0.136 | -0.128 | -0.235 | — |
| chr5_56815181_T_C | chr5:56815181 | -0.037 | -0.029 | -0.241 | 0.0020% |
| chr5_56815206_G_A | chr5:56815206 | 0.097 | 0.011 | 0.241 | — |
| chr5_56814965_A_C | chr5:56814965 | 0.040 | -0.186 | 0.235 | — |
| chr5_56814979_G_T | chr5:56814979 | 0.133 | 0.032 | -0.171 | — |
| chr5_56815196_T_A | chr5:56815196 | -0.020 | 0.045 | -0.235 | — |
| chr5_56814973_G_A | chr5:56814973 | -0.017 | -0.020 | -0.229 | — |
| chr5_56815055_G_A | chr5:56815055 | -0.023 | 0.062 | -0.229 | — |
| chr5_56815192_C_G | chr5:56815192 | -0.130 | -0.064 | -0.076 | — |
| chr5_56814479_C_T | chr5:56814479 | 0.062 | 0.091 | 0.224 | <0.001% |
| chr5_56814927_T_G | chr5:56814927 | -0.045 | -0.079 | -0.224 | — |
| chr5_56815003_C_G | chr5:56815003 | 0.090 | 0.030 | 0.224 | — |
| chr5_56815145_C_A | chr5:56815145 | 0.010 | 0.049 | 0.224 | — |
| chr5_56815175_C_T | chr5:56815175 | -0.010 | 0.043 | 0.224 | — |
| chr5_56815176_A_C | chr5:56815176 | 0.000 | -0.048 | -0.224 | — |
| chr5_56815211_G_A | chr5:56815211 | 0.126 | 0.053 | 0.071 | — |
| chr5_56814951_C_T | chr5:56814951 | -0.070 | -0.046 | -0.218 | — |
| chr5_56815182_G_T | chr5:56815182 | 0.010 | 0.119 | 0.218 | — |
| chr5_56815207_G_T | chr5:56815207 | 0.063 | 0.027 | 0.218 | — |
| chr5_56815209_G_A | chr5:56815209 | -0.040 | 0.039 | 0.218 | — |
| chr5_56815216_G_T | chr5:56815216 | 0.080 | 0.067 | 0.218 | — |
| chr5_56815228_G_T | chr5:56815228 | 0.037 | 0.037 | 0.218 | — |
| chr5_56814928_T_C | chr5:56814928 | -0.072 | -0.092 | -0.212 | — |
| chr5_56814944_C_G | chr5:56814944 | -0.030 | -0.037 | -0.212 | — |
| chr5_56815001_T_A | chr5:56815001 | -0.120 | 0.015 | 0.118 | — |
| chr5_56815165_G_A | chr5:56815165 | -0.120 | -0.086 | -0.094 | — |
| chr5_56815061_G_A | chr5:56815061 | 0.020 | -0.026 | -0.206 | — |
| chr5_56815103_T_G | chr5:56815103 | 0.015 | 0.027 | 0.206 | — |
| chr5_56815148_G_T | chr5:56815148 | 0.063 | 0.062 | 0.206 | — |
| chr5_56815164_A_C | chr5:56815164 | 0.116 | 0.063 | 0.076 | — |
| chr5_56815188_A_T | chr5:56815188 | 0.116 | 0.022 | 0.118 | — |
| chr5_56815196_T_G | chr5:56815196 | 0.116 | -0.029 | -0.153 | — |
| chr5_56815215_G_A | chr5:56815215 | 0.013 | 0.037 | 0.206 | — |
| chr5_56815230_C_T | chr5:56815230 | -0.020 | 0.019 | 0.206 | — |
| chr5_56814943_G_T | chr5:56814943 | -0.068 | 0.004 | -0.200 | — |
| chr5_56814948_C_A | chr5:56814948 | -0.005 | -0.033 | -0.200 | — |
| chr5_56814957_C_A | chr5:56814957 | 0.113 | 0.011 | -0.029 | — |
| chr5_56814971_G_T | chr5:56814971 | 0.113 | 0.003 | 0.094 | — |
| chr5_56815130_G_C | chr5:56815130 | 0.113 | 0.070 | 0.012 | <0.001% |
| chr5_56815157_T_G | chr5:56815157 | -0.003 | -0.023 | 0.200 | — |
| chr5_56815173_C_G | chr5:56815173 | -0.113 | -0.027 | 0.029 | — |
| chr5_56815186_C_A | chr5:56815186 | 0.023 | 0.023 | 0.200 | — |
| chr5_56815205_C_A | chr5:56815205 | -0.073 | 0.147 | 0.200 | — |
| chr5_56815230_C_G | chr5:56815230 | 0.073 | 0.055 | 0.200 | — |
| chr5_56814985_C_G | chr5:56814985 | -0.111 | 0.007 | 0.159 | — |
| chr5_56814926_C_A | chr5:56814926 | -0.038 | -0.081 | -0.194 | — |
| chr5_56814930_C_G | chr5:56814930 | 0.020 | 0.143 | 0.194 | — |
| chr5_56814973_G_C | chr5:56814973 | -0.032 | 0.034 | 0.194 | — |
| chr5_56814998_G_T | chr5:56814998 | 0.037 | 0.051 | 0.194 | — |
| chr5_56815030_G_A | chr5:56815030 | 0.015 | 0.003 | -0.194 | 0.0013% |
| chr5_56815113_G_C | chr5:56815113 | 0.080 | -0.007 | 0.194 | — |
| chr5_56815180_C_A | chr5:56815180 | -0.110 | -0.035 | 0.000 | 0.077% |
| chr5_56815192_C_T | chr5:56815192 | -0.110 | -0.005 | -0.029 | 0.0085% |
| chr5_56815198_C_T | chr5:56815198 | -0.110 | -0.027 | 0.053 | — |
| chr5_56815209_G_T | chr5:56815209 | -0.027 | 0.015 | 0.194 | — |
| chr5_56815213_C_T | chr5:56815213 | 0.030 | 0.076 | 0.194 | — |
| chr5_56815220_T_G | chr5:56815220 | 0.110 | -0.111 | -0.029 | — |
| chr5_56815012_C_A | chr5:56815012 | 0.108 | -0.008 | -0.100 | — |
| chr5_56814598_C_G | chr5:56814598 | 0.030 | 0.041 | 0.188 | <0.001% |
| chr5_56814882_A_C | chr5:56814882 | 0.060 | 0.039 | -0.188 | 0.024% |
| chr5_56814976_G_C | chr5:56814976 | 0.003 | 0.017 | 0.188 | — |
| chr5_56815083_C_G | chr5:56815083 | 0.093 | -0.003 | 0.188 | — |
| chr5_56815123_C_A | chr5:56815123 | -0.060 | 0.011 | -0.188 | — |
| chr5_56815184_C_T | chr5:56815184 | 0.060 | 0.041 | 0.188 | — |
| chr5_56815205_C_T | chr5:56815205 | 0.047 | 0.030 | 0.188 | — |
| chr5_56815206_G_T | chr5:56815206 | 0.093 | 0.016 | 0.188 | — |
| chr5_56815210_C_G | chr5:56815210 | 0.033 | 0.030 | 0.188 | — |
| chr5_56815217_G_C | chr5:56815217 | 0.087 | -0.037 | -0.188 | — |
| chr5_56815004_C_A | chr5:56815004 | 0.105 | 0.028 | 0.141 | — |
| chr5_56814963_C_A | chr5:56814963 | -0.025 | 0.060 | -0.182 | 0.0013% |
| chr5_56814989_T_G | chr5:56814989 | 0.037 | 0.022 | 0.182 | — |
| chr5_56815014_A_T | chr5:56815014 | 0.082 | -0.016 | -0.182 | — |
| chr5_56815063_C_G | chr5:56815063 | 0.040 | 0.018 | 0.182 | — |
| chr5_56815168_A_G | chr5:56815168 | 0.043 | -0.088 | -0.182 | 0.0013% |
| chr5_56815176_A_G | chr5:56815176 | -0.007 | -0.052 | -0.182 | — |
| chr5_56815209_G_C | chr5:56815209 | 0.063 | -0.004 | 0.182 | — |
Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.