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SF3A1
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near SF3A1
chr22:30,231,987..30,456,894, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr22_30337647_T_A | chr22:30337647 | 0.406 | 0.560 | 0.618 | — |
| chr22_30337647_T_C | chr22:30337647 | 0.358 | 0.458 | 0.694 | <0.001% |
| chr22_30337658_A_T | chr22:30337658 | 0.380 | 0.456 | 0.559 | — |
| chr22_30256359_C_G | chr22:30256359 | 0.173 | 0.060 | 0.635 | — |
| chr22_30256370_A_G | chr22:30256370 | 0.138 | 0.076 | 0.612 | — |
| chr22_30325940_G_C | chr22:30325940 | 0.306 | 0.235 | 0.235 | — |
| chr22_30337642_C_G | chr22:30337642 | -0.278 | -0.353 | -0.541 | — |
| chr22_30256348_G_A | chr22:30256348 | -0.067 | -0.014 | -0.518 | 0.066% |
| chr22_30337640_C_T | chr22:30337640 | -0.290 | -0.316 | -0.512 | — |
| chr22_30256338_C_G | chr22:30256338 | 0.136 | 0.057 | 0.506 | — |
| chr22_30337646_G_T | chr22:30337646 | 0.260 | 0.283 | 0.506 | — |
| chr22_30337640_C_G | chr22:30337640 | -0.275 | -0.332 | -0.500 | — |
| chr22_30256337_C_G | chr22:30256337 | 0.171 | 0.042 | 0.494 | — |
| chr22_30337652_G_C | chr22:30337652 | -0.260 | -0.348 | -0.494 | — |
| chr22_30337654_A_C | chr22:30337654 | 0.223 | 0.312 | 0.447 | — |
| chr22_30256334_G_C | chr22:30256334 | 0.111 | 0.034 | 0.435 | — |
| chr22_30256350_C_G | chr22:30256350 | 0.073 | -0.044 | 0.435 | — |
| chr22_30325972_C_G | chr22:30325972 | 0.035 | 0.084 | 0.435 | — |
| chr22_30337661_G_A | chr22:30337661 | 0.243 | 0.332 | 0.318 | — |
| chr22_30256330_T_A | chr22:30256330 | -0.092 | 0.063 | -0.412 | — |
| chr22_30256346_G_C | chr22:30256346 | -0.090 | 0.003 | -0.412 | <0.001% |
| chr22_30256351_C_A | chr22:30256351 | 0.155 | 0.016 | 0.412 | — |
| chr22_30337636_T_G | chr22:30337636 | -0.233 | -0.273 | -0.406 | — |
| chr22_30337655_C_A | chr22:30337655 | -0.228 | -0.263 | -0.371 | — |
| chr22_30337652_G_A | chr22:30337652 | -0.190 | -0.260 | -0.388 | — |
| chr22_30337638_G_A | chr22:30337638 | -0.214 | -0.236 | -0.371 | — |
| chr22_30256332_C_G | chr22:30256332 | 0.110 | 0.018 | 0.376 | — |
| chr22_30256333_T_C | chr22:30256333 | 0.111 | 0.013 | 0.376 | — |
| chr22_30337636_T_A | chr22:30337636 | -0.181 | -0.208 | -0.376 | — |
| chr22_30337642_C_A | chr22:30337642 | -0.196 | -0.231 | -0.376 | — |
| chr22_30337644_T_C | chr22:30337644 | 0.183 | 0.185 | 0.371 | — |
| chr22_30256339_T_G | chr22:30256339 | 0.128 | 0.039 | 0.365 | — |
| chr22_30337636_T_C | chr22:30337636 | -0.168 | -0.198 | -0.365 | — |
| chr22_30337637_T_G | chr22:30337637 | -0.168 | -0.226 | -0.365 | — |
| chr22_30337644_T_A | chr22:30337644 | 0.185 | 0.218 | 0.359 | — |
| chr22_30337638_G_C | chr22:30337638 | -0.201 | -0.228 | -0.324 | — |
| chr22_30337637_T_A | chr22:30337637 | -0.163 | -0.203 | -0.347 | — |
| chr22_30256342_T_C | chr22:30256342 | 0.070 | 0.015 | 0.329 | — |
| chr22_30256346_G_T | chr22:30256346 | -0.047 | -0.015 | -0.329 | — |
| chr22_30337641_C_A | chr22:30337641 | 0.154 | 0.232 | 0.324 | — |
| chr22_30337644_T_G | chr22:30337644 | -0.145 | -0.188 | -0.318 | — |
| chr22_30337645_G_T | chr22:30337645 | 0.179 | 0.166 | 0.224 | — |
| chr22_30337635_C_A | chr22:30337635 | -0.130 | -0.173 | -0.312 | — |
| chr22_30337646_G_A | chr22:30337646 | 0.176 | 0.235 | 0.300 | — |
| chr22_30256348_G_C | chr22:30256348 | -0.058 | -0.041 | -0.306 | — |
| chr22_30256355_T_A | chr22:30256355 | -0.028 | -0.019 | -0.306 | — |
| chr22_30256356_T_C | chr22:30256356 | -0.131 | -0.018 | -0.306 | — |
| chr22_30325941_T_C | chr22:30325941 | -0.030 | -0.006 | 0.306 | — |
| chr22_30337649_C_A | chr22:30337649 | 0.126 | 0.178 | 0.306 | — |
| chr22_30337633_T_A | chr22:30337633 | 0.149 | 0.192 | 0.300 | — |
| chr22_30337646_G_C | chr22:30337646 | 0.136 | 0.171 | 0.300 | — |
| chr22_30337652_G_T | chr22:30337652 | -0.160 | -0.211 | -0.300 | — |
| chr22_30256328_T_G | chr22:30256328 | 0.018 | -0.004 | 0.294 | — |
| chr22_30256370_A_C | chr22:30256370 | 0.087 | 0.022 | 0.294 | — |
| chr22_30256342_T_G | chr22:30256342 | 0.060 | 0.030 | 0.282 | — |
| chr22_30337651_T_C | chr22:30337651 | -0.158 | -0.195 | -0.282 | — |
| chr22_30337639_G_C | chr22:30337639 | -0.138 | -0.155 | -0.276 | — |
| chr22_30325882_G_C | chr22:30325882 | 0.155 | 0.156 | 0.153 | — |
| chr22_30256347_C_G | chr22:30256347 | -0.093 | 0.000 | -0.271 | — |
| chr22_30256355_T_C | chr22:30256355 | -0.103 | -0.020 | -0.271 | — |
| chr22_30256356_T_A | chr22:30256356 | -0.067 | -0.001 | -0.271 | — |
| chr22_30337659_T_A | chr22:30337659 | -0.151 | -0.165 | -0.200 | — |
| chr22_30337637_T_C | chr22:30337637 | -0.147 | -0.184 | -0.259 | — |
| chr22_30256333_T_G | chr22:30256333 | 0.063 | 0.011 | 0.259 | — |
| chr22_30256343_G_T | chr22:30256343 | 0.032 | 0.033 | 0.259 | — |
| chr22_30256345_C_A | chr22:30256345 | -0.013 | 0.008 | -0.259 | — |
| chr22_30256362_A_C | chr22:30256362 | 0.042 | 0.015 | 0.259 | — |
| chr22_30337661_G_C | chr22:30337661 | 0.126 | 0.148 | 0.253 | — |
| chr22_30337656_T_G | chr22:30337656 | -0.142 | -0.157 | -0.106 | — |
| chr22_30256339_T_C | chr22:30256339 | 0.043 | 0.025 | 0.247 | — |
| chr22_30256351_C_G | chr22:30256351 | 0.121 | 0.013 | 0.247 | — |
| chr22_30325975_T_G | chr22:30325975 | 0.070 | 0.037 | 0.247 | — |
| chr22_30337639_G_T | chr22:30337639 | -0.135 | -0.128 | -0.247 | — |
| chr22_30256330_T_G | chr22:30256330 | 0.045 | -0.006 | 0.235 | — |
| chr22_30256345_C_T | chr22:30256345 | -0.053 | -0.006 | -0.235 | 0.0072% |
| chr22_30256352_C_G | chr22:30256352 | 0.110 | 0.032 | 0.235 | — |
| chr22_30337655_C_G | chr22:30337655 | -0.133 | -0.112 | -0.100 | — |
| chr22_30337659_T_G | chr22:30337659 | -0.132 | -0.143 | -0.176 | — |
| chr22_30337633_T_G | chr22:30337633 | 0.116 | 0.152 | 0.229 | — |
| chr22_30337634_A_T | chr22:30337634 | 0.085 | 0.103 | 0.229 | — |
| chr22_30337651_T_G | chr22:30337651 | -0.128 | -0.112 | -0.088 | — |
| chr22_30256347_C_T | chr22:30256347 | -0.030 | 0.005 | -0.224 | 0.0020% |
| chr22_30256359_C_A | chr22:30256359 | -0.035 | 0.003 | -0.224 | — |
| chr22_30256483_A_C | chr22:30256483 | -0.060 | -0.027 | -0.224 | — |
| chr22_30325958_G_A | chr22:30325958 | 0.022 | 0.060 | -0.224 | — |
| chr22_30337651_T_A | chr22:30337651 | -0.126 | -0.141 | -0.188 | — |
| chr22_30337655_C_T | chr22:30337655 | -0.126 | -0.133 | -0.218 | <0.001% |
| chr22_30337657_A_C | chr22:30337657 | 0.062 | 0.103 | 0.224 | — |
| chr22_30337642_C_T | chr22:30337642 | -0.121 | -0.132 | -0.200 | 0.0014% |
| chr22_30256328_T_C | chr22:30256328 | 0.037 | 0.006 | 0.212 | — |
| chr22_30256347_C_A | chr22:30256347 | -0.022 | 0.001 | -0.212 | — |
| chr22_30256392_C_G | chr22:30256392 | -0.115 | -0.027 | -0.212 | — |
| chr22_30325975_T_C | chr22:30325975 | 0.063 | 0.034 | 0.212 | — |
| chr22_30337650_C_T | chr22:30337650 | 0.118 | 0.141 | 0.153 | — |
| chr22_30337656_T_C | chr22:30337656 | -0.117 | -0.140 | -0.182 | — |
| chr22_30337638_G_T | chr22:30337638 | -0.091 | -0.063 | -0.206 | — |
| chr22_30337648_C_A | chr22:30337648 | -0.092 | -0.114 | -0.206 | — |
| chr22_30325924_G_C | chr22:30325924 | 0.115 | 0.071 | 0.188 | — |
| chr22_30256327_C_A | chr22:30256327 | -0.008 | -0.027 | -0.200 | <0.001% |
| chr22_30256353_A_G | chr22:30256353 | 0.073 | 0.011 | 0.200 | — |
| chr22_30256362_A_G | chr22:30256362 | 0.048 | 0.016 | 0.200 | — |
| chr22_30256481_G_T | chr22:30256481 | -0.038 | -0.001 | -0.200 | — |
| chr22_30325973_T_C | chr22:30325973 | 0.073 | 0.019 | 0.200 | — |
| chr22_30337632_G_C | chr22:30337632 | -0.083 | -0.094 | -0.194 | — |
| chr22_30337635_C_T | chr22:30337635 | -0.093 | -0.104 | -0.194 | — |
| chr22_30337660_G_A | chr22:30337660 | -0.105 | -0.135 | -0.194 | — |
| chr22_30325957_G_T | chr22:30325957 | 0.108 | 0.029 | 0.071 | — |
| chr22_30337654_A_T | chr22:30337654 | -0.107 | -0.126 | -0.171 | — |
| chr22_30256336_C_A | chr22:30256336 | 0.020 | 0.027 | -0.188 | — |
| chr22_30256338_C_A | chr22:30256338 | 0.037 | -0.020 | 0.188 | — |
| chr22_30256353_A_C | chr22:30256353 | -0.075 | -0.014 | -0.188 | — |
| chr22_30256357_C_A | chr22:30256357 | 0.025 | 0.048 | -0.188 | 0.0013% |
| chr22_30256360_T_G | chr22:30256360 | 0.070 | 0.020 | 0.188 | — |
| chr22_30256412_A_C | chr22:30256412 | 0.002 | -0.003 | 0.188 | <0.001% |
| chr22_30337629_A_C | chr22:30337629 | 0.090 | 0.094 | 0.188 | — |
| chr22_30337635_C_G | chr22:30337635 | -0.075 | -0.090 | -0.188 | — |
| chr22_30337643_G_T | chr22:30337643 | 0.106 | 0.171 | 0.124 | — |
| chr22_30337632_G_T | chr22:30337632 | -0.080 | -0.091 | -0.182 | — |
| chr22_30256336_C_T | chr22:30256336 | -0.012 | 0.010 | -0.176 | — |
| chr22_30256341_C_A | chr22:30256341 | -0.027 | 0.018 | -0.176 | 0.0046% |
| chr22_30256344_C_T | chr22:30256344 | -0.008 | 0.006 | -0.176 | — |
| chr22_30256346_G_A | chr22:30256346 | -0.070 | -0.033 | -0.176 | <0.001% |
| chr22_30256374_C_A | chr22:30256374 | 0.035 | 0.013 | 0.176 | — |
| chr22_30256375_G_A | chr22:30256375 | -0.045 | 0.000 | -0.176 | 0.018% |
| chr22_30325850_A_T | chr22:30325850 | 0.010 | -0.066 | -0.176 | — |
| chr22_30325966_G_A | chr22:30325966 | -0.020 | -0.016 | -0.176 | <0.001% |
| chr22_30325970_A_G | chr22:30325970 | 0.072 | 0.016 | 0.176 | — |
| chr22_30325973_T_G | chr22:30325973 | 0.080 | 0.019 | 0.176 | — |
| chr22_30325976_T_G | chr22:30325976 | 0.047 | 0.029 | 0.176 | — |
| chr22_30337658_A_C | chr22:30337658 | 0.099 | 0.118 | 0.165 | — |
| chr22_30325971_C_G | chr22:30325971 | 0.097 | 0.022 | 0.094 | — |
| chr22_30337641_C_T | chr22:30337641 | 0.074 | 0.089 | 0.171 | — |
| chr22_30337645_G_A | chr22:30337645 | 0.096 | 0.109 | 0.165 | — |
| chr22_30256337_C_T | chr22:30256337 | 0.095 | 0.019 | 0.118 | — |
| chr22_30337660_G_T | chr22:30337660 | -0.094 | -0.122 | -0.153 | — |
| chr22_30256340_G_A | chr22:30256340 | -0.007 | 0.003 | -0.165 | — |
| chr22_30256348_G_T | chr22:30256348 | 0.003 | -0.013 | -0.165 | — |
| chr22_30256358_C_A | chr22:30256358 | -0.020 | -0.006 | -0.165 | — |
| chr22_30256483_A_T | chr22:30256483 | -0.040 | -0.018 | -0.165 | — |
| chr22_30325921_T_G | chr22:30325921 | -0.058 | -0.009 | -0.165 | — |
| chr22_30325966_G_T | chr22:30325966 | 0.005 | -0.006 | -0.165 | 0.0020% |
| chr22_30325972_C_A | chr22:30325972 | 0.063 | 0.056 | 0.165 | — |
| chr22_30325978_C_A | chr22:30325978 | -0.003 | -0.003 | -0.165 | — |
| chr22_30337660_G_C | chr22:30337660 | -0.092 | -0.095 | -0.124 | — |
| chr22_30325971_C_A | chr22:30325971 | 0.092 | 0.015 | 0.035 | — |
| chr22_30337653_A_C | chr22:30337653 | -0.091 | -0.108 | -0.112 | — |
| chr22_30337632_G_A | chr22:30337632 | -0.058 | -0.065 | -0.159 | — |
| chr22_30337650_C_A | chr22:30337650 | 0.065 | 0.080 | 0.159 | — |
| chr22_30337645_G_C | chr22:30337645 | 0.088 | 0.091 | 0.153 | — |
| chr22_30256325_T_A | chr22:30256325 | -0.008 | 0.019 | -0.153 | — |
| chr22_30256412_A_G | chr22:30256412 | -0.005 | -0.010 | 0.153 | — |
| chr22_30256426_T_C | chr22:30256426 | 0.040 | 0.011 | 0.153 | — |
| chr22_30256473_G_C | chr22:30256473 | -0.010 | -0.005 | -0.153 | — |
| chr22_30256483_A_G | chr22:30256483 | -0.055 | -0.024 | -0.153 | — |
| chr22_30325923_G_C | chr22:30325923 | 0.047 | 0.010 | 0.153 | — |
| chr22_30325927_T_G | chr22:30325927 | -0.003 | 0.000 | 0.153 | — |
| chr22_30325928_C_T | chr22:30325928 | -0.045 | 0.034 | -0.153 | — |
| chr22_30325957_G_C | chr22:30325957 | 0.037 | 0.010 | 0.153 | — |
| chr22_30325976_T_C | chr22:30325976 | 0.025 | 0.013 | 0.153 | — |
| chr22_30337640_C_A | chr22:30337640 | -0.062 | -0.043 | -0.153 | — |
| chr22_30337634_A_G | chr22:30337634 | -0.085 | -0.093 | -0.118 | — |
| chr22_30325971_C_T | chr22:30325971 | 0.082 | 0.015 | 0.071 | 0.0013% |
| chr22_30256358_C_T | chr22:30256358 | -0.003 | -0.003 | -0.141 | — |
| chr22_30256359_C_T | chr22:30256359 | 0.057 | 0.019 | 0.141 | — |
| chr22_30256381_T_C | chr22:30256381 | -0.043 | -0.016 | -0.141 | <0.001% |
| chr22_30256383_T_C | chr22:30256383 | -0.058 | -0.004 | -0.141 | — |
| chr22_30256406_C_G | chr22:30256406 | 0.015 | 0.003 | 0.141 | — |
| chr22_30256424_A_G | chr22:30256424 | 0.028 | 0.000 | 0.141 | — |
| chr22_30256449_C_T | chr22:30256449 | -0.015 | 0.000 | -0.141 | — |
| chr22_30256469_C_G | chr22:30256469 | 0.035 | 0.009 | 0.141 | — |
| chr22_30256470_A_C | chr22:30256470 | -0.028 | -0.009 | -0.141 | — |
| chr22_30256482_T_A | chr22:30256482 | -0.035 | 0.000 | -0.141 | <0.001% |
| chr22_30256484_A_G | chr22:30256484 | -0.038 | -0.016 | -0.141 | — |
| chr22_30325973_T_A | chr22:30325973 | 0.080 | 0.028 | 0.129 | — |
| chr22_30337649_C_G | chr22:30337649 | 0.018 | 0.055 | 0.141 | — |
| chr22_30325975_T_A | chr22:30325975 | 0.078 | 0.032 | 0.129 | — |
| chr22_30337656_T_A | chr22:30337656 | -0.078 | -0.089 | -0.006 | — |
| chr22_30325974_G_A | chr22:30325974 | 0.075 | 0.043 | 0.059 | — |
| chr22_30256325_T_C | chr22:30256325 | -0.025 | 0.005 | -0.129 | — |
| chr22_30256330_T_C | chr22:30256330 | -0.073 | 0.008 | -0.106 | — |
| chr22_30256340_G_T | chr22:30256340 | -0.025 | 0.004 | -0.129 | — |
| chr22_30256352_C_A | chr22:30256352 | 0.015 | -0.005 | -0.129 | — |
| chr22_30256356_T_G | chr22:30256356 | -0.060 | -0.003 | -0.129 | — |
| chr22_30256362_A_T | chr22:30256362 | 0.033 | 0.004 | 0.129 | — |
| chr22_30256363_G_A | chr22:30256363 | -0.045 | -0.006 | -0.129 | — |
| chr22_30256375_G_C | chr22:30256375 | -0.053 | -0.003 | -0.129 | — |
| chr22_30256379_T_C | chr22:30256379 | -0.042 | -0.014 | -0.129 | — |
| chr22_30256387_C_A | chr22:30256387 | -0.053 | -0.011 | -0.129 | <0.001% |
| chr22_30256390_C_G | chr22:30256390 | -0.055 | -0.015 | -0.129 | — |
| chr22_30256427_G_T | chr22:30256427 | -0.043 | -0.013 | -0.129 | — |
| chr22_30256439_C_A | chr22:30256439 | -0.022 | 0.005 | -0.129 | — |
| chr22_30256446_T_C | chr22:30256446 | -0.035 | -0.019 | -0.129 | — |
| chr22_30256481_G_A | chr22:30256481 | -0.023 | 0.011 | -0.129 | — |
| chr22_30325886_C_G | chr22:30325886 | 0.013 | 0.004 | 0.129 | — |
| chr22_30325893_T_C | chr22:30325893 | 0.000 | -0.005 | 0.129 | — |
| chr22_30325967_C_T | chr22:30325967 | 0.045 | 0.001 | -0.129 | 0.0026% |
| chr22_30337641_C_G | chr22:30337641 | 0.039 | 0.049 | 0.129 | — |
| chr22_30256334_G_A | chr22:30256334 | 0.072 | 0.020 | 0.106 | — |
| chr22_30325974_G_C | chr22:30325974 | 0.072 | 0.039 | 0.106 | — |
| chr22_30337634_A_C | chr22:30337634 | -0.071 | -0.082 | -0.112 | — |
Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.