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SGMS1
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near SGMS1
chr10:50,205,600..50,723,956, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR ▾ | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr10_50393895_C_T | chr10:50393895 | 94,720 | 19,968 | 26,496 | 3.9e-5 |
| chr10_50393889_T_A | chr10:50393889 | 62,336 | 14,592 | 17,152 | — |
| chr10_50393881_G_T | chr10:50393881 | 44,160 | 8,064 | 14,592 | — |
| chr10_50393884_G_C | chr10:50393884 | 42,496 | 8,800 | 13,312 | — |
| chr10_50393881_G_C | chr10:50393881 | 39,936 | 7,552 | 15,360 | — |
| chr10_50393911_A_T | chr10:50393911 | 39,040 | 11,616 | 11,136 | — |
| chr10_50393882_G_C | chr10:50393882 | 33,280 | 6,048 | 12,800 | — |
| chr10_50393882_G_T | chr10:50393882 | 29,952 | 4,992 | 8,832 | — |
| chr10_50393880_A_C | chr10:50393880 | 28,544 | 5,184 | 11,520 | — |
| chr10_50393906_T_A | chr10:50393906 | 28,544 | 7,840 | 10,496 | — |
| chr10_50393888_C_G | chr10:50393888 | 26,880 | 5,792 | 10,880 | — |
| chr10_50393888_C_T | chr10:50393888 | 26,112 | 7,616 | 11,008 | — |
| chr10_50393889_T_G | chr10:50393889 | 24,320 | 4,448 | 10,240 | — |
| chr10_50393905_C_T | chr10:50393905 | -24,320 | -4,960 | -8,320 | — |
| chr10_50393881_G_A | chr10:50393881 | 23,296 | 4,576 | 7,936 | — |
| chr10_50393895_C_G | chr10:50393895 | 23,168 | 5,280 | 6,784 | — |
| chr10_50393885_A_C | chr10:50393885 | -22,400 | -4,288 | -6,144 | — |
| chr10_50393884_G_A | chr10:50393884 | 22,144 | 5,312 | 8,192 | — |
| chr10_50393857_G_T | chr10:50393857 | -21,632 | -3,360 | -10,112 | — |
| chr10_50393857_G_C | chr10:50393857 | -21,504 | -3,424 | -8,320 | — |
| chr10_50393857_G_A | chr10:50393857 | -19,072 | -2,720 | -9,728 | — |
| chr10_50393886_T_C | chr10:50393886 | 18,432 | 3,072 | 5,248 | — |
| chr10_50393880_A_T | chr10:50393880 | 17,408 | 3,520 | 6,528 | — |
| chr10_50393910_G_T | chr10:50393910 | 17,408 | 4,896 | 5,760 | — |
| chr10_50393899_C_G | chr10:50393899 | -16,256 | -2,880 | -5,120 | — |
| chr10_50393875_A_C | chr10:50393875 | -15,488 | -2,208 | -5,120 | — |
| chr10_50393883_G_C | chr10:50393883 | 15,360 | 1,280 | 6,912 | — |
| chr10_50393883_G_T | chr10:50393883 | 14,848 | 1,920 | 4,864 | 1.3e-5 |
| chr10_50393905_C_G | chr10:50393905 | -14,464 | -3,392 | -3,072 | — |
| chr10_50393858_G_A | chr10:50393858 | -14,336 | -2,400 | -7,936 | — |
| chr10_50393906_T_C | chr10:50393906 | 13,952 | 2,272 | 4,608 | — |
| chr10_50393867_C_T | chr10:50393867 | -13,440 | -1,088 | -7,296 | — |
| chr10_50393888_C_A | chr10:50393888 | 13,440 | 2,976 | 3,200 | — |
| chr10_50393859_C_T | chr10:50393859 | -13,312 | -1,152 | -9,216 | — |
| chr10_50393876_A_C | chr10:50393876 | 12,672 | 1,824 | 5,632 | — |
| chr10_50393858_G_C | chr10:50393858 | -12,416 | -2,112 | -6,784 | — |
| chr10_50393909_G_T | chr10:50393909 | 12,160 | 1,888 | 2,304 | — |
| chr10_50393869_A_C | chr10:50393869 | -12,032 | -3,008 | -3,328 | — |
| chr10_50393875_A_T | chr10:50393875 | -11,904 | -1,408 | -4,736 | — |
| chr10_50393859_C_G | chr10:50393859 | -11,648 | -1,056 | -7,168 | — |
| chr10_50393887_T_A | chr10:50393887 | 11,648 | 2,592 | 3,328 | — |
| chr10_50393897_T_C | chr10:50393897 | 11,648 | 1,760 | 6,400 | — |
| chr10_50393899_C_A | chr10:50393899 | -11,648 | -1,120 | -3,200 | — |
| chr10_50393886_T_A | chr10:50393886 | 11,392 | 1,856 | 3,200 | — |
| chr10_50393890_T_G | chr10:50393890 | 11,392 | 1,856 | 5,888 | — |
| chr10_50393866_C_G | chr10:50393866 | -10,880 | -1,472 | -4,224 | — |
| chr10_50393879_A_C | chr10:50393879 | 10,624 | 2,688 | 4,608 | — |
| chr10_50393909_G_A | chr10:50393909 | -10,496 | -2,176 | -5,632 | — |
| chr10_50393859_C_A | chr10:50393859 | -10,368 | -864 | -6,912 | — |
| chr10_50393873_C_A | chr10:50393873 | 10,368 | -224 | 1,280 | — |
| chr10_50393896_G_T | chr10:50393896 | -10,368 | -3,072 | -4,480 | — |
| chr10_50393858_G_T | chr10:50393858 | -10,240 | -1,504 | -6,656 | — |
| chr10_50393891_C_T | chr10:50393891 | 10,240 | 3,104 | 2,048 | 6.4e-4 |
| chr10_50393899_C_T | chr10:50393899 | -10,240 | -2,048 | -4,736 | — |
| chr10_50393866_C_A | chr10:50393866 | -10,112 | -768 | -6,144 | — |
| chr10_50393889_T_C | chr10:50393889 | 9,984 | 1,728 | 4,608 | — |
| chr10_50393866_C_T | chr10:50393866 | -9,728 | -992 | -5,120 | — |
| chr10_50393882_G_A | chr10:50393882 | 9,728 | 640 | 1,280 | — |
| chr10_50393896_G_C | chr10:50393896 | -9,600 | -2,784 | -3,584 | — |
| chr10_50313068_G_T | chr10:50313068 | 9,472 | -1,232 | 2,432 | — |
| chr10_50393895_C_A | chr10:50393895 | 9,472 | -448 | 640 | — |
| chr10_50393908_G_A | chr10:50393908 | 9,344 | 2,720 | 2,688 | — |
| chr10_50393867_C_G | chr10:50393867 | -9,088 | 160 | -3,968 | — |
| chr10_50393876_A_T | chr10:50393876 | -8,704 | -1,760 | -3,456 | — |
| chr10_50393875_A_G | chr10:50393875 | -8,576 | -1,568 | -896 | — |
| chr10_50393897_T_A | chr10:50393897 | -8,448 | -1,760 | -2,304 | — |
| chr10_50393912_C_A | chr10:50393912 | -8,320 | -1,472 | -2,304 | — |
| chr10_50393898_G_T | chr10:50393898 | -8,192 | -1,824 | -4,096 | — |
| chr10_50393910_G_C | chr10:50393910 | -8,192 | -2,432 | -3,968 | — |
| chr10_50393907_A_T | chr10:50393907 | -7,936 | -1,984 | -1,792 | — |
| chr10_50393911_A_G | chr10:50393911 | -7,936 | -960 | -2,688 | — |
| chr10_50393855_C_A | chr10:50393855 | -7,808 | -384 | -4,992 | — |
| chr10_50393877_C_T | chr10:50393877 | 7,680 | 2,080 | 1,280 | — |
| chr10_50393901_A_T | chr10:50393901 | 7,552 | 1,440 | 2,432 | — |
| chr10_50393891_C_A | chr10:50393891 | -7,424 | -2,368 | -5,248 | — |
| chr10_50393906_T_G | chr10:50393906 | 7,296 | 1,952 | 4,864 | — |
| chr10_50393902_G_A | chr10:50393902 | -7,168 | -192 | -2,048 | — |
| chr10_50393905_C_A | chr10:50393905 | -7,168 | -3,360 | 384 | — |
| chr10_50393862_A_C | chr10:50393862 | 6,912 | 448 | 4,096 | — |
| chr10_50393868_A_G | chr10:50393868 | -6,656 | -1,024 | -2,304 | — |
| chr10_50393865_T_A | chr10:50393865 | -6,528 | -384 | -3,840 | — |
| chr10_50393873_C_G | chr10:50393873 | 6,528 | 0 | 4,992 | — |
| chr10_50393901_A_C | chr10:50393901 | 6,528 | 1,600 | 3,328 | — |
| chr10_50393874_C_G | chr10:50393874 | -6,272 | -1,536 | -512 | — |
| chr10_50393877_C_A | chr10:50393877 | 6,144 | 1,568 | 2,048 | 9.3e-4 |
| chr10_50393894_T_A | chr10:50393894 | -6,144 | -1,120 | -2,560 | — |
| chr10_50393904_C_G | chr10:50393904 | 6,144 | 1,216 | 2,944 | — |
| chr10_50393885_A_T | chr10:50393885 | -6,016 | -1,216 | -1,280 | — |
| chr10_50393890_T_C | chr10:50393890 | 6,016 | 1,152 | 3,584 | — |
| chr10_50393892_G_T | chr10:50393892 | 6,016 | 768 | -1,024 | — |
| chr10_50393871_C_A | chr10:50393871 | -5,760 | -1,280 | -3,840 | — |
| chr10_50393878_C_G | chr10:50393878 | -5,760 | -1,088 | -384 | — |
| chr10_50393903_T_C | chr10:50393903 | -5,504 | -1,536 | -4,736 | 2.0e-5 |
| chr10_50393861_A_C | chr10:50393861 | 5,376 | 576 | 2,560 | — |
| chr10_50393868_A_C | chr10:50393868 | 5,376 | 864 | 1,024 | — |
| chr10_50393893_A_G | chr10:50393893 | 5,376 | 288 | 1,920 | — |
| chr10_50393855_C_G | chr10:50393855 | -5,248 | 128 | -2,688 | — |
| chr10_50393867_C_A | chr10:50393867 | 5,120 | 5,024 | -512 | — |
| chr10_50393891_C_G | chr10:50393891 | 5,120 | 1,280 | 1,920 | — |
| chr10_50393869_A_T | chr10:50393869 | -4,992 | -192 | -1,920 | — |
| chr10_50393884_G_T | chr10:50393884 | 4,992 | 1,568 | 768 | — |
| chr10_50313071_G_C | chr10:50313071 | 4,768 | 4,352 | 9,600 | — |
| chr10_50313091_G_C | chr10:50313091 | 4,768 | 2,208 | 2,880 | — |
| chr10_50393865_T_G | chr10:50393865 | 4,480 | 32 | 3,072 | — |
| chr10_50393886_T_G | chr10:50393886 | 4,480 | -288 | 1,152 | — |
| chr10_50393863_G_C | chr10:50393863 | 4,352 | 416 | 2,688 | — |
| chr10_50393885_A_G | chr10:50393885 | -4,352 | -544 | -256 | — |
| chr10_50393902_G_T | chr10:50393902 | 4,224 | 2,272 | 1,664 | — |
| chr10_50393876_A_G | chr10:50393876 | 4,096 | 576 | 2,432 | 1.3e-5 |
| chr10_50393878_C_T | chr10:50393878 | -4,096 | -416 | -2,304 | — |
| chr10_50393887_T_C | chr10:50393887 | -4,096 | -2,144 | -1,280 | — |
| chr10_50393864_G_T | chr10:50393864 | -3,968 | -608 | -2,304 | — |
| chr10_50393873_C_T | chr10:50393873 | -3,968 | -1,184 | -1,536 | 3.3e-5 |
| chr10_50393880_A_G | chr10:50393880 | -3,840 | -32 | -1,408 | — |
| chr10_50393909_G_C | chr10:50393909 | 3,840 | -352 | 1,408 | — |
| chr10_50393907_A_C | chr10:50393907 | -3,712 | -832 | 2,176 | — |
| chr10_50393902_G_C | chr10:50393902 | 3,456 | 704 | 1,024 | — |
| chr10_50393870_G_T | chr10:50393870 | -3,328 | -288 | -2,944 | — |
| chr10_50393856_T_C | chr10:50393856 | -3,200 | -192 | -2,560 | — |
| chr10_50393874_C_A | chr10:50393874 | -3,200 | -992 | -1,408 | — |
| chr10_50393874_C_T | chr10:50393874 | 3,200 | 608 | 128 | — |
| chr10_50393877_C_G | chr10:50393877 | 3,200 | -128 | 1,024 | — |
| chr10_50393898_G_C | chr10:50393898 | -3,200 | -1,120 | -1,536 | — |
| chr10_50393868_A_T | chr10:50393868 | -3,072 | -32 | -3,584 | — |
| chr10_50393862_A_T | chr10:50393862 | 3,072 | 352 | 896 | — |
| chr10_50313049_A_T | chr10:50313049 | 3,008 | 1,456 | -320 | — |
| chr10_50393856_T_A | chr10:50393856 | -2,944 | 192 | -3,840 | — |
| chr10_50393879_A_G | chr10:50393879 | -2,944 | 160 | 1,920 | — |
| chr10_50393894_T_G | chr10:50393894 | 2,944 | 320 | 2,048 | — |
| chr10_50393898_G_A | chr10:50393898 | -2,944 | -704 | -2,816 | — |
| chr10_50393878_C_A | chr10:50393878 | -2,816 | 32 | -1,280 | — |
| chr10_50393887_T_G | chr10:50393887 | -2,816 | -1,728 | -1,920 | — |
| chr10_50393883_G_A | chr10:50393883 | -2,560 | -2,336 | -3,584 | — |
| chr10_50393900_A_C | chr10:50393900 | 2,560 | 352 | 3,072 | — |
| chr10_50393864_G_A | chr10:50393864 | -2,560 | -384 | -2,816 | — |
| chr10_50313055_A_C | chr10:50313055 | 2,560 | 1,312 | 2,496 | — |
| chr10_50393860_A_C | chr10:50393860 | 2,560 | 416 | 128 | — |
| chr10_50393879_A_T | chr10:50393879 | 2,560 | 1,344 | 768 | — |
| chr10_50313073_A_T | chr10:50313073 | 2,496 | 192 | -1,152 | — |
| chr10_50393855_C_T | chr10:50393855 | -2,432 | -96 | -2,176 | — |
| chr10_50393860_A_G | chr10:50393860 | -2,432 | -672 | -640 | — |
| chr10_50393904_C_T | chr10:50393904 | -2,432 | 32 | -1,152 | 6.6e-6 |
| chr10_50313078_A_T | chr10:50313078 | -2,336 | -864 | -1,984 | — |
| chr10_50393860_A_T | chr10:50393860 | -2,304 | -160 | -2,560 | — |
| chr10_50393893_A_T | chr10:50393893 | 2,304 | 32 | 640 | — |
| chr10_50313071_G_T | chr10:50313071 | 2,240 | 2,368 | 4,992 | — |
| chr10_50313051_A_T | chr10:50313051 | -2,240 | -624 | -2,624 | 6.6e-6 |
| chr10_50393863_G_A | chr10:50393863 | -2,176 | -128 | -1,920 | — |
| chr10_50393892_G_C | chr10:50393892 | 2,176 | -160 | -1,408 | — |
| chr10_50393893_A_C | chr10:50393893 | -2,176 | -608 | -768 | — |
| chr10_50393903_T_A | chr10:50393903 | 2,176 | 32 | -1,536 | — |
| chr10_50313152_G_T | chr10:50313152 | 2,080 | 560 | 192 | — |
| chr10_50393869_A_G | chr10:50393869 | -2,048 | -992 | -640 | — |
| chr10_50393871_C_G | chr10:50393871 | 2,048 | -352 | 0 | — |
| chr10_50393890_T_A | chr10:50393890 | 2,048 | 288 | 896 | — |
| chr10_50393907_A_G | chr10:50393907 | 2,048 | 224 | 1,920 | — |
| chr10_50393908_G_C | chr10:50393908 | -2,048 | -192 | 0 | — |
| chr10_50393904_C_A | chr10:50393904 | -1,920 | -608 | -1,280 | 6.6e-6 |
| chr10_50313075_A_T | chr10:50313075 | -1,888 | -688 | -1,536 | — |
| chr10_50313059_T_G | chr10:50313059 | 1,792 | 416 | 320 | — |
| chr10_50393901_A_G | chr10:50393901 | -1,792 | -416 | -256 | — |
| chr10_50313104_C_A | chr10:50313104 | -1,344 | -208 | 2,048 | — |
| chr10_50313135_T_A | chr10:50313135 | 1,312 | 1,808 | 3,200 | — |
| chr10_50393870_G_A | chr10:50393870 | -1,280 | -96 | -2,048 | — |
| chr10_50393892_G_A | chr10:50393892 | 1,280 | 32 | -2,048 | 5.9e-5 |
| chr10_50313099_T_G | chr10:50313099 | 1,216 | 640 | 2,368 | — |
| chr10_50313076_G_A | chr10:50313076 | -1,120 | -480 | -1,984 | — |
| chr10_50313045_C_A | chr10:50313045 | -1,056 | -384 | -2,304 | — |
| chr10_50313056_A_C | chr10:50313056 | 1,024 | 144 | 2,368 | — |
| chr10_50393863_G_T | chr10:50393863 | -1,024 | 192 | -1,792 | — |
| chr10_50313049_A_G | chr10:50313049 | -992 | -208 | -3,264 | — |
| chr10_50313045_C_T | chr10:50313045 | 960 | 288 | -1,984 | 6.6e-6 |
| chr10_50294519_G_C | chr10:50294519 | 864 | 80 | -1,664 | — |
| chr10_50313107_G_A | chr10:50313107 | 832 | 96 | 2,688 | — |
| chr10_50313053_A_G | chr10:50313053 | 832 | 512 | 1,984 | — |
| chr10_50313054_A_C | chr10:50313054 | 800 | 192 | 2,496 | — |
| chr10_50313086_G_A | chr10:50313086 | 768 | -224 | -2,176 | — |
| chr10_50313052_C_A | chr10:50313052 | -768 | -192 | -1,856 | — |
| chr10_50393903_T_G | chr10:50393903 | -768 | -1,824 | -1,280 | — |
| chr10_50294528_A_C | chr10:50294528 | -736 | 96 | 2,240 | — |
| chr10_50313128_A_C | chr10:50313128 | 704 | 176 | 1,792 | — |
| chr10_50393870_G_C | chr10:50393870 | -640 | 224 | -2,432 | — |
| chr10_50313109_A_C | chr10:50313109 | -512 | 16 | 3,264 | — |
| chr10_50313038_A_C | chr10:50313038 | -480 | -240 | 3,456 | — |
| chr10_50313043_T_A | chr10:50313043 | 480 | 432 | 1,856 | — |
| chr10_50313090_C_T | chr10:50313090 | 480 | 80 | 1,856 | 3.3e-4 |
| chr10_50313043_T_G | chr10:50313043 | 448 | 528 | 2,112 | — |
| chr10_50313046_A_T | chr10:50313046 | -448 | -368 | -1,792 | — |
| chr10_50393897_T_G | chr10:50393897 | 384 | 384 | 2,688 | — |
| chr10_50313047_G_T | chr10:50313047 | 352 | 48 | -1,728 | — |
| chr10_50313090_C_A | chr10:50313090 | -352 | -352 | -1,728 | — |
| chr10_50313095_T_A | chr10:50313095 | 352 | -128 | -1,728 | — |
| chr10_50313138_G_A | chr10:50313138 | 320 | -416 | 1,984 | — |
| chr10_50313054_A_G | chr10:50313054 | 256 | 192 | 2,944 | — |
| chr10_50313068_G_A | chr10:50313068 | 160 | 976 | 1,984 | — |
| chr10_50393872_C_G | chr10:50393872 | -128 | -256 | 2,176 | — |
| chr10_50313083_T_C | chr10:50313083 | 96 | 304 | 3,008 | — |
| chr10_50313047_G_A | chr10:50313047 | 96 | -80 | -2,432 | — |
| chr10_50313048_G_A | chr10:50313048 | 96 | -96 | -2,176 | — |
| chr10_50313131_A_G | chr10:50313131 | -32 | 176 | 1,792 | — |
Showing 200 of 200 in this window. Scores are the raw center bin Δ, ALT minus REF; click a column to sort.