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SGMS1
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near SGMS1
chr10:50,205,600..50,723,956, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr10_50393895_C_T | chr10:50393895 | 1.000 | 1.000 | 1.000 | 0.0039% |
| chr10_50393889_T_A | chr10:50393889 | 1.000 | 1.000 | 0.788 | — |
| chr10_50393881_G_T | chr10:50393881 | 1.000 | 0.640 | 0.671 | — |
| chr10_50393884_G_C | chr10:50393884 | 1.000 | 0.698 | 0.612 | — |
| chr10_50393881_G_C | chr10:50393881 | 1.000 | 0.599 | 0.706 | — |
| chr10_50393911_A_T | chr10:50393911 | 1.000 | 0.921 | 0.512 | — |
| chr10_50393882_G_C | chr10:50393882 | 0.865 | 0.480 | 0.588 | — |
| chr10_50393882_G_T | chr10:50393882 | 0.779 | 0.396 | 0.406 | — |
| chr10_50393880_A_C | chr10:50393880 | 0.742 | 0.411 | 0.529 | — |
| chr10_50393906_T_A | chr10:50393906 | 0.742 | 0.622 | 0.482 | — |
| chr10_50393888_C_G | chr10:50393888 | 0.699 | 0.459 | 0.500 | — |
| chr10_50393888_C_T | chr10:50393888 | 0.679 | 0.604 | 0.506 | — |
| chr10_50393889_T_G | chr10:50393889 | 0.632 | 0.353 | 0.471 | — |
| chr10_50393905_C_T | chr10:50393905 | -0.632 | -0.393 | -0.382 | — |
| chr10_50393881_G_A | chr10:50393881 | 0.606 | 0.363 | 0.365 | — |
| chr10_50393895_C_G | chr10:50393895 | 0.602 | 0.419 | 0.312 | — |
| chr10_50393885_A_C | chr10:50393885 | -0.582 | -0.340 | -0.282 | — |
| chr10_50393884_G_A | chr10:50393884 | 0.576 | 0.421 | 0.376 | — |
| chr10_50393857_G_T | chr10:50393857 | -0.562 | -0.266 | -0.465 | — |
| chr10_50393857_G_C | chr10:50393857 | -0.559 | -0.272 | -0.382 | — |
| chr10_50393857_G_A | chr10:50393857 | -0.496 | -0.216 | -0.447 | — |
| chr10_50393886_T_C | chr10:50393886 | 0.479 | 0.244 | 0.241 | — |
| chr10_50393880_A_T | chr10:50393880 | 0.453 | 0.279 | 0.300 | — |
| chr10_50393910_G_T | chr10:50393910 | 0.453 | 0.388 | 0.265 | — |
| chr10_50393899_C_G | chr10:50393899 | -0.423 | -0.228 | -0.235 | — |
| chr10_50393875_A_C | chr10:50393875 | -0.403 | -0.175 | -0.235 | — |
| chr10_50393883_G_C | chr10:50393883 | 0.399 | 0.102 | 0.318 | — |
| chr10_50393883_G_T | chr10:50393883 | 0.386 | 0.152 | 0.224 | 0.0013% |
| chr10_50393905_C_G | chr10:50393905 | -0.376 | -0.269 | -0.141 | — |
| chr10_50393858_G_A | chr10:50393858 | -0.373 | -0.190 | -0.365 | — |
| chr10_50393906_T_C | chr10:50393906 | 0.363 | 0.180 | 0.212 | — |
| chr10_50393867_C_T | chr10:50393867 | -0.349 | -0.086 | -0.335 | — |
| chr10_50393888_C_A | chr10:50393888 | 0.349 | 0.236 | 0.147 | — |
| chr10_50393859_C_T | chr10:50393859 | -0.346 | -0.091 | -0.424 | — |
| chr10_50393876_A_C | chr10:50393876 | 0.329 | 0.145 | 0.259 | — |
| chr10_50393858_G_C | chr10:50393858 | -0.323 | -0.168 | -0.312 | — |
| chr10_50393909_G_T | chr10:50393909 | 0.316 | 0.150 | 0.106 | — |
| chr10_50393869_A_C | chr10:50393869 | -0.313 | -0.239 | -0.153 | — |
| chr10_50393875_A_T | chr10:50393875 | -0.309 | -0.112 | -0.218 | — |
| chr10_50393859_C_G | chr10:50393859 | -0.303 | -0.084 | -0.329 | — |
| chr10_50393887_T_A | chr10:50393887 | 0.303 | 0.206 | 0.153 | — |
| chr10_50393897_T_C | chr10:50393897 | 0.303 | 0.140 | 0.294 | — |
| chr10_50393899_C_A | chr10:50393899 | -0.303 | -0.089 | -0.147 | — |
| chr10_50393886_T_A | chr10:50393886 | 0.296 | 0.147 | 0.147 | — |
| chr10_50393890_T_G | chr10:50393890 | 0.296 | 0.147 | 0.271 | — |
| chr10_50393866_C_G | chr10:50393866 | -0.283 | -0.117 | -0.194 | — |
| chr10_50393879_A_C | chr10:50393879 | 0.276 | 0.213 | 0.212 | — |
| chr10_50393909_G_A | chr10:50393909 | -0.273 | -0.173 | -0.259 | — |
| chr10_50393859_C_A | chr10:50393859 | -0.270 | -0.069 | -0.318 | — |
| chr10_50393873_C_A | chr10:50393873 | 0.270 | -0.018 | 0.059 | — |
| chr10_50393896_G_T | chr10:50393896 | -0.270 | -0.244 | -0.206 | — |
| chr10_50393858_G_T | chr10:50393858 | -0.266 | -0.119 | -0.306 | — |
| chr10_50393891_C_T | chr10:50393891 | 0.266 | 0.246 | 0.094 | 0.064% |
| chr10_50393899_C_T | chr10:50393899 | -0.266 | -0.162 | -0.218 | — |
| chr10_50393866_C_A | chr10:50393866 | -0.263 | -0.061 | -0.282 | — |
| chr10_50393889_T_C | chr10:50393889 | 0.260 | 0.137 | 0.212 | — |
| chr10_50393866_C_T | chr10:50393866 | -0.253 | -0.079 | -0.235 | — |
| chr10_50393882_G_A | chr10:50393882 | 0.253 | 0.051 | 0.059 | — |
| chr10_50313071_G_C | chr10:50313071 | 0.124 | 0.345 | 0.441 | — |
| chr10_50393896_G_C | chr10:50393896 | -0.250 | -0.221 | -0.165 | — |
| chr10_50313068_G_T | chr10:50313068 | 0.246 | -0.098 | 0.112 | — |
| chr10_50393895_C_A | chr10:50393895 | 0.246 | -0.036 | 0.029 | — |
| chr10_50393908_G_A | chr10:50393908 | 0.243 | 0.216 | 0.124 | — |
| chr10_50393867_C_G | chr10:50393867 | -0.236 | 0.013 | -0.182 | — |
| chr10_50393876_A_T | chr10:50393876 | -0.226 | -0.140 | -0.159 | — |
| chr10_50393875_A_G | chr10:50393875 | -0.223 | -0.124 | -0.041 | — |
| chr10_50393897_T_A | chr10:50393897 | -0.220 | -0.140 | -0.106 | — |
| chr10_50393912_C_A | chr10:50393912 | -0.216 | -0.117 | -0.106 | — |
| chr10_50393898_G_T | chr10:50393898 | -0.213 | -0.145 | -0.188 | — |
| chr10_50393910_G_C | chr10:50393910 | -0.213 | -0.193 | -0.182 | — |
| chr10_50393907_A_T | chr10:50393907 | -0.206 | -0.157 | -0.082 | — |
| chr10_50393911_A_G | chr10:50393911 | -0.206 | -0.076 | -0.124 | — |
| chr10_50393855_C_A | chr10:50393855 | -0.203 | -0.030 | -0.229 | — |
| chr10_50393877_C_T | chr10:50393877 | 0.200 | 0.165 | 0.059 | — |
| chr10_50393901_A_T | chr10:50393901 | 0.196 | 0.114 | 0.112 | — |
| chr10_50393891_C_A | chr10:50393891 | -0.193 | -0.188 | -0.241 | — |
| chr10_50393906_T_G | chr10:50393906 | 0.190 | 0.155 | 0.224 | — |
| chr10_50393902_G_A | chr10:50393902 | -0.186 | -0.015 | -0.094 | — |
| chr10_50393905_C_A | chr10:50393905 | -0.186 | -0.266 | 0.018 | — |
| chr10_50393862_A_C | chr10:50393862 | 0.180 | 0.036 | 0.188 | — |
| chr10_50393868_A_G | chr10:50393868 | -0.173 | -0.081 | -0.106 | — |
| chr10_50393865_T_A | chr10:50393865 | -0.170 | -0.030 | -0.176 | — |
| chr10_50393873_C_G | chr10:50393873 | 0.170 | 0.000 | 0.229 | — |
| chr10_50393901_A_C | chr10:50393901 | 0.170 | 0.127 | 0.153 | — |
| chr10_50393874_C_G | chr10:50393874 | -0.163 | -0.122 | -0.024 | — |
| chr10_50393877_C_A | chr10:50393877 | 0.160 | 0.124 | 0.094 | 0.093% |
| chr10_50393894_T_A | chr10:50393894 | -0.160 | -0.089 | -0.118 | — |
| chr10_50393904_C_G | chr10:50393904 | 0.160 | 0.096 | 0.135 | — |
| chr10_50393885_A_T | chr10:50393885 | -0.156 | -0.096 | -0.059 | — |
| chr10_50393890_T_C | chr10:50393890 | 0.156 | 0.091 | 0.165 | — |
| chr10_50393892_G_T | chr10:50393892 | 0.156 | 0.061 | -0.047 | — |
| chr10_50393871_C_A | chr10:50393871 | -0.150 | -0.102 | -0.176 | — |
| chr10_50393878_C_G | chr10:50393878 | -0.150 | -0.086 | -0.018 | — |
| chr10_50393903_T_C | chr10:50393903 | -0.143 | -0.122 | -0.218 | 0.0020% |
| chr10_50393861_A_C | chr10:50393861 | 0.140 | 0.046 | 0.118 | — |
| chr10_50393868_A_C | chr10:50393868 | 0.140 | 0.069 | 0.047 | — |
| chr10_50393893_A_G | chr10:50393893 | 0.140 | 0.023 | 0.088 | — |
| chr10_50393855_C_G | chr10:50393855 | -0.136 | 0.010 | -0.124 | — |
| chr10_50393867_C_A | chr10:50393867 | 0.133 | 0.398 | -0.024 | — |
| chr10_50393891_C_G | chr10:50393891 | 0.133 | 0.102 | 0.088 | — |
| chr10_50313071_G_T | chr10:50313071 | 0.058 | 0.188 | 0.229 | — |
| chr10_50393869_A_T | chr10:50393869 | -0.130 | -0.015 | -0.088 | — |
| chr10_50393884_G_T | chr10:50393884 | 0.130 | 0.124 | 0.035 | — |
| chr10_50313091_G_C | chr10:50313091 | 0.124 | 0.175 | 0.132 | — |
| chr10_50393865_T_G | chr10:50393865 | 0.116 | 0.003 | 0.141 | — |
| chr10_50393886_T_G | chr10:50393886 | 0.116 | -0.023 | 0.053 | — |
| chr10_50393863_G_C | chr10:50393863 | 0.113 | 0.033 | 0.124 | — |
| chr10_50393885_A_G | chr10:50393885 | -0.113 | -0.043 | -0.012 | — |
| chr10_50393902_G_T | chr10:50393902 | 0.110 | 0.180 | 0.076 | — |
| chr10_50393876_A_G | chr10:50393876 | 0.106 | 0.046 | 0.112 | 0.0013% |
| chr10_50393878_C_T | chr10:50393878 | -0.106 | -0.033 | -0.106 | — |
| chr10_50393887_T_C | chr10:50393887 | -0.106 | -0.170 | -0.059 | — |
| chr10_50393864_G_T | chr10:50393864 | -0.103 | -0.048 | -0.106 | — |
| chr10_50393873_C_T | chr10:50393873 | -0.103 | -0.094 | -0.071 | 0.0033% |
| chr10_50393856_T_A | chr10:50393856 | -0.077 | 0.015 | -0.176 | — |
| chr10_50393880_A_G | chr10:50393880 | -0.100 | -0.003 | -0.065 | — |
| chr10_50393909_G_C | chr10:50393909 | 0.100 | -0.028 | 0.065 | — |
| chr10_50393907_A_C | chr10:50393907 | -0.097 | -0.066 | 0.100 | — |
| chr10_50393868_A_T | chr10:50393868 | -0.080 | -0.003 | -0.165 | — |
| chr10_50393883_G_A | chr10:50393883 | -0.067 | -0.185 | -0.165 | — |
| chr10_50313038_A_C | chr10:50313038 | -0.012 | -0.019 | 0.159 | — |
| chr10_50393902_G_C | chr10:50393902 | 0.090 | 0.056 | 0.047 | — |
| chr10_50393870_G_T | chr10:50393870 | -0.087 | -0.023 | -0.135 | — |
| chr10_50313049_A_G | chr10:50313049 | -0.026 | -0.016 | -0.150 | — |
| chr10_50313109_A_C | chr10:50313109 | -0.013 | 0.001 | 0.150 | — |
| chr10_50313135_T_A | chr10:50313135 | 0.034 | 0.143 | 0.147 | — |
| chr10_50393856_T_C | chr10:50393856 | -0.083 | -0.015 | -0.118 | — |
| chr10_50393874_C_A | chr10:50393874 | -0.083 | -0.079 | -0.065 | — |
| chr10_50393874_C_T | chr10:50393874 | 0.083 | 0.048 | 0.006 | — |
| chr10_50393877_C_G | chr10:50393877 | 0.083 | -0.010 | 0.047 | — |
| chr10_50393898_G_C | chr10:50393898 | -0.083 | -0.089 | -0.071 | — |
| chr10_50393862_A_T | chr10:50393862 | 0.080 | 0.028 | 0.041 | — |
| chr10_50393900_A_C | chr10:50393900 | 0.067 | 0.028 | 0.141 | — |
| chr10_50313049_A_T | chr10:50313049 | 0.078 | 0.115 | -0.015 | — |
| chr10_50313083_T_C | chr10:50313083 | 0.002 | 0.024 | 0.138 | — |
| chr10_50313054_A_G | chr10:50313054 | 0.007 | 0.015 | 0.135 | — |
| chr10_50393879_A_G | chr10:50393879 | -0.077 | 0.013 | 0.088 | — |
| chr10_50393894_T_G | chr10:50393894 | 0.077 | 0.025 | 0.094 | — |
| chr10_50393898_G_A | chr10:50393898 | -0.077 | -0.056 | -0.129 | — |
| chr10_50393864_G_A | chr10:50393864 | -0.067 | -0.030 | -0.129 | — |
| chr10_50393878_C_A | chr10:50393878 | -0.073 | 0.003 | -0.059 | — |
| chr10_50393887_T_G | chr10:50393887 | -0.073 | -0.137 | -0.088 | — |
| chr10_50313107_G_A | chr10:50313107 | 0.022 | 0.008 | 0.124 | — |
| chr10_50393897_T_G | chr10:50393897 | 0.010 | 0.030 | 0.124 | — |
| chr10_50313051_A_T | chr10:50313051 | -0.058 | -0.049 | -0.121 | <0.001% |
| chr10_50313055_A_C | chr10:50313055 | 0.067 | 0.104 | 0.115 | — |
| chr10_50393860_A_C | chr10:50393860 | 0.067 | 0.033 | 0.006 | — |
| chr10_50393860_A_T | chr10:50393860 | -0.060 | -0.013 | -0.118 | — |
| chr10_50393879_A_T | chr10:50393879 | 0.067 | 0.107 | 0.035 | — |
| chr10_50313054_A_C | chr10:50313054 | 0.021 | 0.015 | 0.115 | — |
| chr10_50313073_A_T | chr10:50313073 | 0.065 | 0.015 | -0.053 | — |
| chr10_50313047_G_A | chr10:50313047 | 0.002 | -0.006 | -0.112 | — |
| chr10_50393855_C_T | chr10:50393855 | -0.063 | -0.008 | -0.100 | — |
| chr10_50393860_A_G | chr10:50393860 | -0.063 | -0.053 | -0.029 | — |
| chr10_50393870_G_C | chr10:50393870 | -0.017 | 0.018 | -0.112 | — |
| chr10_50393904_C_T | chr10:50393904 | -0.063 | 0.003 | -0.053 | <0.001% |
| chr10_50313056_A_C | chr10:50313056 | 0.027 | 0.011 | 0.109 | — |
| chr10_50313099_T_G | chr10:50313099 | 0.032 | 0.051 | 0.109 | — |
| chr10_50313078_A_T | chr10:50313078 | -0.061 | -0.069 | -0.091 | — |
| chr10_50313045_C_A | chr10:50313045 | -0.027 | -0.030 | -0.106 | — |
| chr10_50393893_A_T | chr10:50393893 | 0.060 | 0.003 | 0.029 | — |
| chr10_50294528_A_C | chr10:50294528 | -0.019 | 0.008 | 0.103 | — |
| chr10_50313048_G_A | chr10:50313048 | 0.002 | -0.008 | -0.100 | — |
| chr10_50313086_G_A | chr10:50313086 | 0.020 | -0.018 | -0.100 | — |
| chr10_50393863_G_A | chr10:50393863 | -0.057 | -0.010 | -0.088 | — |
| chr10_50393872_C_G | chr10:50393872 | -0.003 | -0.020 | 0.100 | — |
| chr10_50393892_G_C | chr10:50393892 | 0.057 | -0.013 | -0.065 | — |
| chr10_50393893_A_C | chr10:50393893 | -0.057 | -0.048 | -0.035 | — |
| chr10_50393903_T_A | chr10:50393903 | 0.057 | 0.003 | -0.071 | — |
| chr10_50313043_T_G | chr10:50313043 | 0.012 | 0.042 | 0.097 | — |
| chr10_50313152_G_T | chr10:50313152 | 0.054 | 0.044 | 0.009 | — |
| chr10_50313104_C_A | chr10:50313104 | -0.035 | -0.016 | 0.094 | — |
| chr10_50393869_A_G | chr10:50393869 | -0.053 | -0.079 | -0.029 | — |
| chr10_50393870_G_A | chr10:50393870 | -0.033 | -0.008 | -0.094 | — |
| chr10_50393871_C_G | chr10:50393871 | 0.053 | -0.028 | 0.000 | — |
| chr10_50393890_T_A | chr10:50393890 | 0.053 | 0.023 | 0.041 | — |
| chr10_50393892_G_A | chr10:50393892 | 0.033 | 0.003 | -0.094 | 0.0059% |
| chr10_50393907_A_G | chr10:50393907 | 0.053 | 0.018 | 0.088 | — |
| chr10_50393908_G_C | chr10:50393908 | -0.053 | -0.015 | 0.000 | — |
| chr10_50313045_C_T | chr10:50313045 | 0.025 | 0.023 | -0.091 | <0.001% |
| chr10_50313053_A_G | chr10:50313053 | 0.022 | 0.041 | 0.091 | — |
| chr10_50313068_G_A | chr10:50313068 | 0.004 | 0.077 | 0.091 | — |
| chr10_50313076_G_A | chr10:50313076 | -0.029 | -0.038 | -0.091 | — |
| chr10_50313138_G_A | chr10:50313138 | 0.008 | -0.033 | 0.091 | — |
| chr10_50393904_C_A | chr10:50393904 | -0.050 | -0.048 | -0.059 | <0.001% |
| chr10_50313075_A_T | chr10:50313075 | -0.049 | -0.055 | -0.071 | — |
| chr10_50313043_T_A | chr10:50313043 | 0.012 | 0.034 | 0.085 | — |
| chr10_50313052_C_A | chr10:50313052 | -0.020 | -0.015 | -0.085 | — |
| chr10_50313090_C_T | chr10:50313090 | 0.012 | 0.006 | 0.085 | 0.033% |
| chr10_50393903_T_G | chr10:50393903 | -0.020 | -0.145 | -0.059 | — |
| chr10_50313046_A_T | chr10:50313046 | -0.012 | -0.029 | -0.082 | — |
| chr10_50313059_T_G | chr10:50313059 | 0.047 | 0.033 | 0.015 | — |
| chr10_50313128_A_C | chr10:50313128 | 0.018 | 0.014 | 0.082 | — |
| chr10_50313131_A_G | chr10:50313131 | -0.001 | 0.014 | 0.082 | — |
| chr10_50393863_G_T | chr10:50393863 | -0.027 | 0.015 | -0.082 | — |
| chr10_50393901_A_G | chr10:50393901 | -0.047 | -0.033 | -0.012 | — |
| chr10_50313047_G_T | chr10:50313047 | 0.009 | 0.004 | -0.079 | — |
| chr10_50313090_C_A | chr10:50313090 | -0.009 | -0.028 | -0.079 | — |
| chr10_50313095_T_A | chr10:50313095 | 0.009 | -0.010 | -0.079 | — |
| chr10_50294519_G_C | chr10:50294519 | 0.022 | 0.006 | -0.076 | — |
Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.