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SGMS1-AS1
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near SGMS1-AS1
chr10:50,524,950..50,731,636, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr10_50557031_T_C | chr10:50557031 | 0.468 | 0.340 | 0.441 | — |
| chr10_50582817_C_A | chr10:50582817 | 0.403 | 0.452 | 0.418 | <0.001% |
| chr10_50557029_A_G | chr10:50557029 | 0.386 | 0.310 | 0.371 | — |
| chr10_50556985_G_A | chr10:50556985 | 0.281 | 0.272 | 0.200 | — |
| chr10_50557031_T_A | chr10:50557031 | 0.275 | 0.254 | 0.229 | — |
| chr10_50557014_A_T | chr10:50557014 | -0.226 | -0.109 | -0.182 | — |
| chr10_50557008_T_A | chr10:50557008 | -0.211 | -0.129 | -0.232 | — |
| chr10_50557008_T_G | chr10:50557008 | -0.211 | -0.127 | -0.226 | — |
| chr10_50556987_T_A | chr10:50556987 | 0.210 | 0.201 | 0.159 | — |
| chr10_50556968_G_C | chr10:50556968 | -0.208 | -0.168 | -0.197 | — |
| chr10_50556982_T_A | chr10:50556982 | 0.208 | 0.104 | 0.171 | — |
| chr10_50556972_T_G | chr10:50556972 | -0.206 | -0.190 | -0.168 | — |
| chr10_50556989_T_A | chr10:50556989 | 0.180 | 0.185 | 0.100 | — |
| chr10_50557008_T_C | chr10:50557008 | -0.180 | -0.140 | -0.124 | — |
| chr10_50557004_A_T | chr10:50557004 | -0.171 | -0.129 | -0.156 | — |
| chr10_50556982_T_G | chr10:50556982 | 0.168 | 0.104 | 0.168 | — |
| chr10_50557028_A_G | chr10:50557028 | 0.161 | 0.094 | 0.221 | — |
| chr10_50557015_A_C | chr10:50557015 | 0.160 | 0.157 | 0.194 | — |
| chr10_50557037_T_G | chr10:50557037 | 0.160 | 0.155 | 0.232 | — |
| chr10_50582811_T_C | chr10:50582811 | -0.150 | -0.137 | -0.141 | — |
| chr10_50557037_T_A | chr10:50557037 | 0.148 | 0.132 | 0.109 | — |
| chr10_50557035_A_C | chr10:50557035 | 0.145 | 0.114 | 0.174 | — |
| chr10_50557011_G_T | chr10:50557011 | -0.143 | -0.074 | -0.197 | — |
| chr10_50557012_T_A | chr10:50557012 | -0.141 | -0.079 | -0.144 | — |
| chr10_50557018_T_C | chr10:50557018 | -0.141 | 0.028 | -0.029 | — |
| chr10_50557071_C_T | chr10:50557071 | 0.138 | 0.112 | 0.100 | — |
| chr10_50582814_T_A | chr10:50582814 | -0.138 | -0.147 | -0.188 | — |
| chr10_50557015_A_T | chr10:50557015 | 0.136 | 0.099 | 0.144 | — |
| chr10_50557007_G_A | chr10:50557007 | -0.131 | -0.071 | -0.156 | — |
| chr10_50557007_G_T | chr10:50557007 | -0.131 | -0.081 | -0.179 | — |
| chr10_50557014_A_C | chr10:50557014 | -0.131 | -0.127 | -0.079 | — |
| chr10_50557035_A_G | chr10:50557035 | 0.131 | 0.119 | 0.209 | — |
| chr10_50557049_C_G | chr10:50557049 | 0.131 | 0.076 | 0.100 | — |
| chr10_50557011_G_A | chr10:50557011 | -0.130 | -0.076 | -0.197 | — |
| chr10_50556971_C_G | chr10:50556971 | 0.126 | 0.129 | 0.129 | — |
| chr10_50557031_T_G | chr10:50557031 | 0.088 | 0.076 | 0.221 | — |
| chr10_50557096_T_A | chr10:50557096 | 0.120 | 0.124 | 0.109 | — |
| chr10_50557012_T_G | chr10:50557012 | -0.116 | -0.033 | -0.050 | — |
| chr10_50557053_G_C | chr10:50557053 | 0.116 | 0.094 | 0.118 | — |
| chr10_50557055_A_T | chr10:50557055 | 0.115 | 0.104 | 0.109 | — |
| chr10_50556969_T_A | chr10:50556969 | 0.111 | 0.099 | 0.088 | <0.001% |
| chr10_50556967_T_C | chr10:50556967 | 0.110 | 0.041 | 0.112 | — |
| chr10_50556997_G_T | chr10:50556997 | -0.110 | -0.023 | -0.121 | — |
| chr10_50582808_C_A | chr10:50582808 | 0.110 | 0.109 | 0.082 | — |
| chr10_50557000_G_T | chr10:50557000 | -0.108 | -0.076 | -0.171 | — |
| chr10_50557012_T_C | chr10:50557012 | -0.105 | -0.069 | -0.065 | — |
| chr10_50557054_T_C | chr10:50557054 | 0.105 | 0.074 | 0.115 | — |
| chr10_50557099_C_G | chr10:50557099 | 0.105 | 0.053 | 0.079 | — |
| chr10_50582814_T_G | chr10:50582814 | 0.105 | 0.140 | 0.176 | — |
| chr10_50557009_G_T | chr10:50557009 | -0.103 | -0.043 | -0.150 | — |
| chr10_50556983_T_A | chr10:50556983 | 0.101 | 0.041 | 0.056 | — |
| chr10_50557007_G_C | chr10:50557007 | -0.100 | -0.071 | -0.076 | — |
| chr10_50557020_G_T | chr10:50557020 | -0.100 | -0.086 | -0.144 | — |
| chr10_50557051_T_G | chr10:50557051 | 0.098 | 0.061 | 0.106 | — |
| chr10_50557014_A_G | chr10:50557014 | -0.097 | -0.104 | -0.053 | — |
| chr10_50557034_T_C | chr10:50557034 | 0.073 | 0.076 | 0.171 | — |
| chr10_50557038_A_C | chr10:50557038 | 0.025 | 0.030 | 0.171 | — |
| chr10_50557103_A_C | chr10:50557103 | 0.097 | 0.046 | 0.100 | — |
| chr10_50557033_A_C | chr10:50557033 | 0.095 | 0.086 | 0.159 | <0.001% |
| chr10_50557040_T_C | chr10:50557040 | 0.095 | 0.091 | 0.156 | — |
| chr10_50556992_T_C | chr10:50556992 | -0.093 | -0.102 | -0.059 | — |
| chr10_50557004_A_G | chr10:50557004 | -0.093 | -0.102 | -0.118 | — |
| chr10_50557005_G_T | chr10:50557005 | -0.093 | -0.086 | -0.124 | — |
| chr10_50557015_A_G | chr10:50557015 | 0.093 | 0.081 | 0.126 | — |
| chr10_50582812_G_T | chr10:50582812 | -0.093 | -0.094 | -0.135 | — |
| chr10_50557016_T_C | chr10:50557016 | 0.092 | 0.069 | 0.124 | — |
| chr10_50557052_A_G | chr10:50557052 | 0.092 | 0.071 | 0.138 | — |
| chr10_50557091_T_G | chr10:50557091 | -0.092 | -0.048 | -0.035 | — |
| chr10_50557003_A_T | chr10:50557003 | -0.090 | -0.038 | -0.115 | — |
| chr10_50557016_T_A | chr10:50557016 | -0.090 | -0.061 | -0.062 | — |
| chr10_50557032_A_C | chr10:50557032 | 0.058 | 0.056 | 0.159 | — |
| chr10_50557059_T_C | chr10:50557059 | -0.090 | -0.069 | -0.062 | — |
| chr10_50557092_A_C | chr10:50557092 | -0.090 | -0.051 | -0.044 | — |
| chr10_50557001_C_T | chr10:50557001 | -0.088 | -0.061 | -0.121 | <0.001% |
| chr10_50557010_A_G | chr10:50557010 | -0.087 | -0.046 | -0.118 | — |
| chr10_50557030_T_C | chr10:50557030 | 0.083 | 0.074 | 0.153 | — |
| chr10_50557091_T_C | chr10:50557091 | -0.087 | -0.028 | -0.035 | — |
| chr10_50557011_G_C | chr10:50557011 | -0.085 | -0.033 | -0.121 | — |
| chr10_50557029_A_C | chr10:50557029 | 0.085 | 0.061 | 0.129 | — |
| chr10_50557000_G_C | chr10:50557000 | -0.058 | -0.023 | -0.147 | — |
| chr10_50557009_G_C | chr10:50557009 | -0.083 | -0.033 | -0.138 | — |
| chr10_50557028_A_C | chr10:50557028 | 0.052 | 0.025 | 0.147 | — |
| chr10_50557029_A_T | chr10:50557029 | 0.083 | 0.058 | 0.094 | — |
| chr10_50557047_C_G | chr10:50557047 | 0.083 | 0.061 | 0.059 | — |
| chr10_50557063_T_A | chr10:50557063 | 0.083 | 0.066 | 0.076 | — |
| chr10_50556986_A_C | chr10:50556986 | 0.082 | 0.033 | 0.124 | — |
| chr10_50557000_G_A | chr10:50557000 | -0.048 | -0.051 | -0.144 | 0.0026% |
| chr10_50557010_A_C | chr10:50557010 | -0.082 | -0.046 | -0.018 | — |
| chr10_50582799_T_G | chr10:50582799 | -0.082 | -0.089 | -0.029 | — |
| chr10_50557039_A_C | chr10:50557039 | 0.078 | 0.061 | 0.141 | — |
| chr10_50582787_A_C | chr10:50582787 | -0.080 | -0.099 | -0.112 | — |
| chr10_50582816_C_G | chr10:50582816 | 0.080 | 0.089 | 0.106 | — |
| chr10_50556973_A_C | chr10:50556973 | 0.060 | 0.063 | 0.138 | — |
| chr10_50557032_A_G | chr10:50557032 | 0.043 | 0.043 | 0.138 | — |
| chr10_50557056_G_A | chr10:50557056 | 0.078 | 0.074 | 0.068 | — |
| chr10_50557095_C_T | chr10:50557095 | -0.078 | -0.013 | -0.059 | — |
| chr10_50582801_T_C | chr10:50582801 | -0.078 | -0.102 | -0.100 | — |
| chr10_50582812_G_C | chr10:50582812 | -0.078 | -0.081 | -0.100 | — |
| chr10_50557034_T_G | chr10:50557034 | 0.067 | 0.063 | 0.135 | — |
| chr10_50557055_A_C | chr10:50557055 | 0.077 | 0.063 | 0.085 | — |
| chr10_50582784_C_T | chr10:50582784 | -0.038 | -0.058 | -0.135 | — |
| chr10_50556991_C_A | chr10:50556991 | -0.075 | -0.043 | -0.085 | — |
| chr10_50557047_C_A | chr10:50557047 | 0.075 | 0.053 | 0.041 | — |
| chr10_50582787_A_T | chr10:50582787 | -0.075 | -0.091 | -0.118 | — |
| chr10_50556983_T_C | chr10:50556983 | 0.073 | 0.013 | 0.068 | — |
| chr10_50557020_G_C | chr10:50557020 | -0.073 | -0.066 | -0.076 | — |
| chr10_50557033_A_G | chr10:50557033 | 0.050 | 0.056 | 0.129 | — |
| chr10_50557093_A_T | chr10:50557093 | -0.073 | -0.030 | -0.026 | — |
| chr10_50582803_T_C | chr10:50582803 | -0.073 | -0.076 | -0.088 | — |
| chr10_50556994_T_G | chr10:50556994 | 0.072 | 0.033 | 0.100 | — |
| chr10_50556997_G_A | chr10:50556997 | -0.060 | -0.036 | -0.126 | — |
| chr10_50557036_T_C | chr10:50557036 | 0.057 | 0.038 | 0.126 | — |
| chr10_50557036_T_G | chr10:50557036 | 0.072 | 0.071 | 0.112 | — |
| chr10_50556995_C_A | chr10:50556995 | -0.070 | -0.036 | -0.100 | — |
| chr10_50556999_C_A | chr10:50556999 | -0.048 | 0.003 | -0.124 | <0.001% |
| chr10_50557027_A_G | chr10:50557027 | 0.063 | 0.056 | 0.124 | — |
| chr10_50557102_G_C | chr10:50557102 | 0.070 | 0.048 | 0.038 | — |
| chr10_50582782_G_A | chr10:50582782 | -0.050 | -0.069 | -0.124 | — |
| chr10_50582782_G_T | chr10:50582782 | -0.050 | -0.069 | -0.124 | — |
| chr10_50582784_C_A | chr10:50582784 | -0.018 | -0.048 | -0.124 | — |
| chr10_50556982_T_C | chr10:50556982 | 0.068 | -0.003 | 0.094 | — |
| chr10_50557020_G_A | chr10:50557020 | -0.037 | -0.023 | -0.121 | — |
| chr10_50557023_A_C | chr10:50557023 | 0.063 | 0.048 | 0.121 | — |
| chr10_50557024_A_C | chr10:50557024 | 0.042 | 0.041 | 0.121 | — |
| chr10_50557039_A_G | chr10:50557039 | 0.068 | 0.071 | 0.121 | — |
| chr10_50557045_T_A | chr10:50557045 | -0.068 | -0.028 | -0.071 | — |
| chr10_50557048_A_T | chr10:50557048 | 0.068 | 0.030 | 0.032 | — |
| chr10_50557063_T_G | chr10:50557063 | 0.068 | 0.041 | 0.068 | — |
| chr10_50557069_T_A | chr10:50557069 | -0.068 | -0.043 | -0.053 | — |
| chr10_50543439_A_C | chr10:50543439 | 0.032 | 0.025 | 0.118 | — |
| chr10_50556969_T_C | chr10:50556969 | 0.067 | 0.018 | 0.079 | — |
| chr10_50556991_C_T | chr10:50556991 | -0.067 | -0.030 | -0.065 | <0.001% |
| chr10_50557044_C_A | chr10:50557044 | -0.033 | -0.010 | -0.118 | — |
| chr10_50557057_G_C | chr10:50557057 | 0.067 | 0.046 | 0.065 | 0.0053% |
| chr10_50557092_A_T | chr10:50557092 | 0.067 | 0.010 | 0.035 | — |
| chr10_50582789_T_C | chr10:50582789 | -0.067 | -0.066 | -0.047 | 0.0013% |
| chr10_50556980_A_G | chr10:50556980 | -0.065 | -0.051 | -0.065 | — |
| chr10_50557070_A_T | chr10:50557070 | -0.065 | -0.038 | -0.053 | — |
| chr10_50557087_C_A | chr10:50557087 | -0.065 | -0.043 | -0.079 | — |
| chr10_50556970_T_G | chr10:50556970 | 0.063 | 0.028 | 0.106 | — |
| chr10_50556983_T_G | chr10:50556983 | 0.063 | 0.015 | 0.085 | — |
| chr10_50557043_G_T | chr10:50557043 | -0.047 | -0.036 | -0.112 | — |
| chr10_50557062_A_T | chr10:50557062 | -0.063 | -0.038 | -0.038 | — |
| chr10_50582782_G_C | chr10:50582782 | -0.020 | -0.020 | -0.112 | — |
| chr10_50556986_A_G | chr10:50556986 | 0.062 | 0.013 | 0.076 | — |
| chr10_50556987_T_G | chr10:50556987 | -0.062 | -0.058 | -0.038 | — |
| chr10_50557013_C_T | chr10:50557013 | -0.062 | -0.038 | -0.079 | — |
| chr10_50557016_T_G | chr10:50557016 | -0.062 | -0.066 | -0.041 | — |
| chr10_50557037_T_C | chr10:50557037 | 0.062 | 0.030 | 0.100 | 0.011% |
| chr10_50557053_G_A | chr10:50557053 | 0.062 | 0.061 | 0.050 | — |
| chr10_50557079_A_C | chr10:50557079 | 0.062 | 0.025 | 0.021 | — |
| chr10_50582780_C_G | chr10:50582780 | -0.062 | -0.048 | -0.018 | — |
| chr10_50556981_G_A | chr10:50556981 | -0.060 | -0.051 | -0.047 | — |
| chr10_50556998_C_T | chr10:50556998 | -0.038 | -0.003 | -0.106 | — |
| chr10_50557001_C_A | chr10:50557001 | -0.058 | -0.028 | -0.106 | — |
| chr10_50557022_A_G | chr10:50557022 | -0.060 | -0.058 | 0.021 | — |
| chr10_50557030_T_G | chr10:50557030 | 0.020 | 0.036 | 0.106 | <0.001% |
| chr10_50557062_A_C | chr10:50557062 | -0.060 | -0.048 | -0.038 | — |
| chr10_50557099_C_A | chr10:50557099 | 0.060 | 0.053 | 0.024 | 0.0033% |
| chr10_50543538_C_T | chr10:50543538 | -0.004 | 0.008 | -0.103 | — |
| chr10_50556967_T_G | chr10:50556967 | 0.058 | 0.013 | 0.035 | — |
| chr10_50557002_C_T | chr10:50557002 | -0.050 | -0.015 | -0.103 | — |
| chr10_50557025_T_C | chr10:50557025 | 0.027 | 0.038 | 0.103 | — |
| chr10_50557043_G_A | chr10:50557043 | -0.033 | -0.020 | -0.103 | 0.0033% |
| chr10_50557054_T_G | chr10:50557054 | 0.058 | 0.043 | 0.053 | — |
| chr10_50557069_T_C | chr10:50557069 | 0.058 | 0.038 | 0.050 | — |
| chr10_50557088_T_G | chr10:50557088 | -0.058 | -0.030 | -0.038 | 4.66% |
| chr10_50557093_A_C | chr10:50557093 | -0.058 | -0.041 | 0.003 | — |
| chr10_50557103_A_T | chr10:50557103 | 0.058 | 0.028 | 0.047 | — |
| chr10_50582811_T_G | chr10:50582811 | -0.058 | -0.048 | -0.065 | — |
| chr10_50557013_C_G | chr10:50557013 | -0.057 | -0.051 | -0.032 | — |
| chr10_50557024_A_G | chr10:50557024 | 0.035 | 0.028 | 0.100 | — |
| chr10_50557044_C_T | chr10:50557044 | -0.037 | -0.015 | -0.100 | — |
| chr10_50557048_A_C | chr10:50557048 | 0.057 | 0.023 | 0.029 | — |
| chr10_50557065_C_A | chr10:50557065 | -0.057 | -0.015 | -0.071 | — |
| chr10_50582767_A_G | chr10:50582767 | -0.030 | -0.061 | -0.100 | <0.001% |
| chr10_50582814_T_C | chr10:50582814 | -0.057 | -0.051 | -0.047 | — |
| chr10_50557018_T_G | chr10:50557018 | 0.055 | 0.061 | 0.076 | — |
| chr10_50557027_A_C | chr10:50557027 | 0.043 | 0.023 | 0.097 | — |
| chr10_50557046_T_G | chr10:50557046 | -0.055 | -0.043 | -0.015 | — |
| chr10_50582763_A_G | chr10:50582763 | -0.055 | -0.051 | 0.006 | — |
| chr10_50582813_C_T | chr10:50582813 | 0.055 | 0.056 | 0.047 | — |
| chr10_50556968_G_A | chr10:50556968 | -0.047 | -0.030 | -0.094 | — |
| chr10_50556977_G_A | chr10:50556977 | -0.053 | -0.028 | -0.056 | 0.0053% |
| chr10_50556979_G_C | chr10:50556979 | 0.053 | 0.023 | 0.068 | — |
| chr10_50557006_G_A | chr10:50557006 | -0.053 | -0.008 | -0.091 | — |
| chr10_50557013_C_A | chr10:50557013 | 0.053 | 0.048 | 0.015 | — |
| chr10_50557021_C_T | chr10:50557021 | -0.007 | -0.008 | -0.094 | <0.001% |
| chr10_50557023_A_G | chr10:50557023 | 0.053 | 0.023 | 0.053 | — |
| chr10_50557038_A_G | chr10:50557038 | 0.053 | 0.013 | 0.094 | — |
| chr10_50557079_A_T | chr10:50557079 | 0.053 | 0.053 | 0.059 | — |
| chr10_50557084_G_T | chr10:50557084 | -0.053 | -0.023 | -0.041 | — |
| chr10_50582783_G_A | chr10:50582783 | 0.013 | -0.015 | -0.094 | 0.0020% |
| chr10_50582816_C_A | chr10:50582816 | 0.053 | 0.056 | 0.047 | — |
| chr10_50556975_G_A | chr10:50556975 | -0.047 | -0.030 | -0.091 | — |
| chr10_50556976_C_G | chr10:50556976 | 0.052 | 0.074 | 0.018 | — |
| chr10_50557021_C_A | chr10:50557021 | -0.052 | -0.005 | -0.088 | — |
| chr10_50557092_A_G | chr10:50557092 | -0.052 | -0.036 | -0.021 | — |
| chr10_50582763_A_C | chr10:50582763 | -0.052 | -0.046 | -0.071 | — |
| chr10_50556968_G_T | chr10:50556968 | -0.050 | -0.010 | -0.065 | — |
Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.