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SHC2

This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.

Scored variants near SHC2

chr19:316,582..560,996, gene body plus 100 kb. Showing the strongest 200 by effect size.

Variant	Position	PXR	FXR	AhR	AF
chr19_344913_C_T	chr19:344913	0.789	0.268	1.000	0.0013%
chr19_335180_C_G	chr19:335180	-0.656	-0.560	-1.000	<0.001%
chr19_384065_C_T	chr19:384065	-0.228	-0.368	-1.000	<0.001%
chr19_384071_G_A	chr19:384071	-0.226	-0.321	-1.000	0.340%
chr19_344877_G_A	chr19:344877	0.145	0.214	1.000	<0.001%
chr19_344911_C_A	chr19:344911	0.587	0.214	1.000	<0.001%
chr19_344921_G_A	chr19:344921	0.582	0.206	0.715	0.0026%
chr19_344921_G_T	chr19:344921	0.567	0.253	0.859	<0.001%
chr19_335181_A_G	chr19:335181	-0.459	-0.374	-1.000	<0.001%
chr19_344809_C_T	chr19:344809	-0.553	-0.023	-0.467	<0.001%
chr19_384076_C_A	chr19:384076	-0.246	-0.245	-0.968	<0.001%
chr19_335128_G_A	chr19:335128	-0.489	-0.447	-0.941	<0.001%
chr19_335159_T_C	chr19:335159	0.499	0.416	0.729	0.104%
chr19_384079_C_T	chr19:384079	0.326	0.198	0.871	0.0026%
chr19_384066_C_T	chr19:384066	-0.123	-0.269	-0.865	0.0026%
chr19_335149_T_C	chr19:335149	-0.369	-0.298	-0.835	<0.001%
chr19_384055_C_T	chr19:384055	-0.153	-0.266	-0.835	<0.001%
chr19_384076_C_T	chr19:384076	-0.216	-0.201	-0.806	0.013%
chr19_344194_C_G	chr19:344194	0.112	0.198	0.765	0.0020%
chr19_344189_C_T	chr19:344189	0.155	0.223	0.727	0.0066%
chr19_384073_T_A	chr19:384073	-0.191	-0.155	-0.712	<0.001%
chr19_344915_T_A	chr19:344915	0.398	0.131	0.522	<0.001%
chr19_384020_G_C	chr19:384020	0.153	0.119	0.700	0.0013%
chr19_384077_G_A	chr19:384077	-0.198	-0.164	-0.694	0.0033%
chr19_344870_G_T	chr19:344870	0.135	0.117	0.661	0.0013%
chr19_335123_G_C	chr19:335123	0.364	0.447	0.594	0.0039%
chr19_335106_T_C	chr19:335106	-0.349	-0.332	-0.629	<0.001%
chr19_335168_T_C	chr19:335168	0.344	0.305	0.541	<0.001%
chr19_344876_G_A	chr19:344876	0.205	0.088	0.577	0.0013%
chr19_344987_C_G	chr19:344987	0.321	0.194	0.526	0.0013%
chr19_343905_G_C	chr19:343905	-0.100	-0.321	-0.565	<0.001%
chr19_343905_G_T	chr19:343905	-0.097	-0.292	-0.565	<0.001%
chr19_344987_C_A	chr19:344987	0.304	0.217	0.565	<0.001%
chr19_384062_C_A	chr19:384062	-0.096	-0.162	-0.565	<0.001%
chr19_344934_G_A	chr19:344934	0.208	0.136	0.559	0.0013%
chr19_344279_T_G	chr19:344279	0.004	-0.060	-0.545	0.013%
chr19_344287_G_A	chr19:344287	0.020	0.085	0.543	<0.001%
chr19_344873_A_G	chr19:344873	-0.190	-0.093	-0.534	0.995%
chr19_335156_C_T	chr19:335156	-0.226	-0.261	-0.518	<0.001%
chr19_344942_C_G	chr19:344942	-0.260	-0.077	-0.518	0.0033%
chr19_344983_G_T	chr19:344983	0.190	0.169	0.518	<0.001%
chr19_343911_T_A	chr19:343911	0.111	0.279	0.506	0.025%
chr19_344281_G_T	chr19:344281	0.012	0.082	0.505	0.0079%
chr19_344781_A_G	chr19:344781	-0.271	-0.066	-0.503	<0.001%
chr19_384062_C_T	chr19:384062	0.131	0.099	0.500	0.0059%
chr19_344914_G_T	chr19:344914	0.275	0.117	0.471	0.0039%
chr19_344325_A_C	chr19:344325	-0.018	-0.054	-0.460	0.0013%
chr19_335242_C_T	chr19:335242	-0.136	-0.114	-0.459	<0.001%
chr19_344875_G_T	chr19:344875	0.190	0.069	0.446	0.0033%
chr19_344386_C_A	chr19:344386	0.016	0.053	0.423	<0.001%
chr19_344933_G_A	chr19:344933	0.108	0.128	0.416	<0.001%
chr19_344870_G_C	chr19:344870	0.055	0.096	0.408	<0.001%
chr19_335230_C_T	chr19:335230	-0.166	-0.160	-0.406	0.0013%
chr19_345063_A_T	chr19:345063	0.121	0.113	0.400	<0.001%
chr19_384048_A_C	chr19:384048	0.069	0.091	0.400	<0.001%
chr19_384089_G_A	chr19:384089	0.128	0.094	0.400	<0.001%
chr19_344781_A_T	chr19:344781	-0.222	-0.056	-0.336	<0.001%
chr19_344724_G_A	chr19:344724	0.220	0.042	0.323	0.0073%
chr19_344739_G_A	chr19:344739	0.219	0.046	0.382	0.0027%
chr19_344793_G_A	chr19:344793	0.161	0.083	0.385	<0.001%
chr19_335123_G_A	chr19:335123	0.216	0.289	0.347	0.0026%
chr19_344333_G_A	chr19:344333	0.030	0.041	0.379	0.0033%
chr19_344268_C_T	chr19:344268	0.006	0.051	0.379	0.0013%
chr19_335112_G_A	chr19:335112	-0.200	-0.178	-0.376	0.0026%
chr19_344288_G_A	chr19:344288	0.025	0.049	0.376	<0.001%
chr19_344290_G_A	chr19:344290	0.004	0.049	0.376	<0.001%
chr19_344182_C_T	chr19:344182	0.014	0.073	0.372	<0.001%
chr19_344990_T_G	chr19:344990	-0.090	-0.095	-0.371	0.0013%
chr19_344385_G_A	chr19:344385	-0.006	0.040	0.364	<0.001%
chr19_344339_G_A	chr19:344339	0.025	0.039	0.364	0.0013%
chr19_344923_G_A	chr19:344923	-0.030	0.044	0.360	0.0020%
chr19_344907_C_T	chr19:344907	0.077	0.064	0.359	<0.001%
chr19_384080_G_A	chr19:384080	0.142	0.103	0.359	0.0026%
chr19_344373_G_A	chr19:344373	0.017	0.032	0.356	<0.001%
chr19_344320_T_C	chr19:344320	-0.013	-0.038	-0.356	<0.001%
chr19_344721_G_A	chr19:344721	0.200	0.020	0.246	<0.001%
chr19_344381_G_A	chr19:344381	0.032	0.030	0.351	0.0079%
chr19_344396_G_A	chr19:344396	0.009	0.035	0.350	<0.001%
chr19_344330_G_A	chr19:344330	0.018	0.036	0.348	<0.001%
chr19_344956_T_C	chr19:344956	-0.030	-0.032	-0.341	<0.001%
chr19_344404_C_A	chr19:344404	0.020	0.033	0.336	0.0013%
chr19_345026_G_A	chr19:345026	0.190	0.258	0.206	<0.001%
chr19_344301_G_A	chr19:344301	0.057	0.039	0.332	<0.001%
chr19_344874_G_C	chr19:344874	0.138	0.052	0.332	0.0020%
chr19_384033_C_T	chr19:384033	0.103	0.063	0.329	<0.001%
chr19_344927_G_T	chr19:344927	0.097	0.065	0.326	<0.001%
chr19_344319_A_C	chr19:344319	-0.010	-0.037	-0.325	<0.001%
chr19_344291_G_A	chr19:344291	0.004	0.036	0.324	<0.001%
chr19_344315_C_A	chr19:344315	0.002	0.039	0.323	<0.001%
chr19_344737_G_A	chr19:344737	0.181	0.045	0.306	<0.001%
chr19_344741_C_G	chr19:344741	-0.181	0.037	-0.064	<0.001%
chr19_344380_G_A	chr19:344380	0.041	0.028	0.318	<0.001%
chr19_335138_C_T	chr19:335138	-0.178	-0.145	-0.318	<0.001%
chr19_378676_C_G	chr19:378676	-0.017	-0.063	-0.318	0.0020%
chr19_344418_G_A	chr19:344418	0.041	0.037	0.315	<0.001%
chr19_344390_C_A	chr19:344390	0.013	0.033	0.314	0.0013%
chr19_344735_C_T	chr19:344735	0.105	0.030	0.314	<0.001%
chr19_344422_C_A	chr19:344422	0.024	0.034	0.313	0.0040%
chr19_344887_G_A	chr19:344887	0.105	0.048	0.313	<0.001%
chr19_344907_C_A	chr19:344907	0.035	0.065	0.310	<0.001%
chr19_344724_G_T	chr19:344724	0.172	0.033	0.262	0.0013%
chr19_344180_C_T	chr19:344180	0.031	0.069	0.301	<0.001%
chr19_344394_C_T	chr19:344394	0.003	0.036	0.300	<0.001%
chr19_344738_G_T	chr19:344738	0.170	0.033	0.224	<0.001%
chr19_344278_C_A	chr19:344278	0.031	0.047	0.299	0.0013%
chr19_344740_G_T	chr19:344740	0.121	0.023	0.298	<0.001%
chr19_344738_G_A	chr19:344738	0.166	0.037	0.271	0.0040%
chr19_344931_G_A	chr19:344931	0.033	0.057	0.294	0.0092%
chr19_384080_G_T	chr19:384080	-0.082	-0.066	-0.294	<0.001%
chr19_344329_C_A	chr19:344329	-0.007	0.029	0.294	0.0020%
chr19_344265_C_A	chr19:344265	0.012	0.056	0.290	<0.001%
chr19_344950_C_G	chr19:344950	-0.075	-0.048	-0.290	0.013%
chr19_344345_C_A	chr19:344345	0.009	0.032	0.289	<0.001%
chr19_344382_G_A	chr19:344382	0.029	0.020	0.288	<0.001%
chr19_345050_C_T	chr19:345050	-0.085	-0.060	-0.282	0.486%
chr19_344849_G_A	chr19:344849	-0.158	0.041	-0.027	<0.001%
chr19_344883_G_T	chr19:344883	-0.002	0.067	0.276	<0.001%
chr19_384029_C_T	chr19:384029	-0.069	-0.043	-0.276	0.0033%
chr19_344948_G_C	chr19:344948	0.101	0.068	0.275	0.0039%
chr19_344713_G_A	chr19:344713	0.082	0.025	0.272	<0.001%
chr19_344703_G_T	chr19:344703	0.077	0.035	0.271	<0.001%
chr19_335224_G_A	chr19:335224	-0.110	-0.095	-0.271	<0.001%
chr19_384037_G_A	chr19:384037	-0.072	-0.047	-0.271	0.0033%
chr19_384102_C_G	chr19:384102	0.062	0.052	0.271	<0.001%
chr19_344200_T_C	chr19:344200	-0.004	-0.034	-0.268	<0.001%
chr19_344829_G_A	chr19:344829	0.151	-0.001	0.182	<0.001%
chr19_344415_C_T	chr19:344415	0.008	0.026	0.266	<0.001%
chr19_344404_C_T	chr19:344404	0.024	0.031	0.265	<0.001%
chr19_335198_C_A	chr19:335198	-0.103	-0.041	-0.265	<0.001%
chr19_335119_C_G	chr19:335119	-0.148	-0.119	-0.259	<0.001%
chr19_344926_C_T	chr19:344926	0.045	0.035	0.260	0.0013%
chr19_344732_G_A	chr19:344732	0.065	0.032	0.260	<0.001%
chr19_384040_G_C	chr19:384040	-0.064	-0.049	-0.259	<0.001%
chr19_344342_G_T	chr19:344342	0.007	0.028	0.257	<0.001%
chr19_344753_T_G	chr19:344753	-0.141	-0.039	-0.254	<0.001%
chr19_344747_G_A	chr19:344747	0.128	0.026	0.253	<0.001%
chr19_384094_T_C	chr19:384094	0.055	0.038	0.253	<0.001%
chr19_344717_G_T	chr19:344717	0.062	0.023	0.252	<0.001%
chr19_344264_G_A	chr19:344264	0.003	0.036	0.249	0.0013%
chr19_343917_C_T	chr19:343917	0.025	-0.128	-0.247	<0.001%
chr19_344745_G_A	chr19:344745	0.139	0.016	0.225	<0.001%
chr19_344414_C_T	chr19:344414	0.012	0.023	0.245	<0.001%
chr19_344947_A_G	chr19:344947	-0.015	-0.011	-0.244	0.0026%
chr19_373470_C_T	chr19:373470	0.080	0.066	0.244	0.020%
chr19_344862_G_C	chr19:344862	0.089	0.034	0.242	0.0053%
chr19_344800_A_C	chr19:344800	-0.052	-0.024	-0.242	<0.001%
chr19_335142_G_T	chr19:335142	-0.130	-0.084	-0.241	<0.001%
chr19_344340_G_A	chr19:344340	-0.001	0.027	0.240	<0.001%
chr19_344969_C_A	chr19:344969	0.005	0.029	0.238	<0.001%
chr19_344724_G_C	chr19:344724	0.134	0.006	0.015	0.060%
chr19_344960_C_G	chr19:344960	-0.087	-0.051	-0.237	0.0013%
chr19_344759_G_A	chr19:344759	0.053	0.031	0.236	0.0013%
chr19_344967_T_C	chr19:344967	-0.037	-0.027	-0.235	0.0079%
chr19_344232_G_A	chr19:344232	0.012	0.041	0.233	0.039%
chr19_344286_C_G	chr19:344286	-0.034	0.047	0.231	<0.001%
chr19_335267_C_G	chr19:335267	-0.090	-0.141	-0.229	73.1%
chr19_373435_G_T	chr19:373435	0.036	0.030	0.229	<0.001%
chr19_344818_G_C	chr19:344818	-0.128	-0.039	-0.175	0.0073%
chr19_345007_G_A	chr19:345007	0.128	0.085	0.165	<0.001%
chr19_344787_G_A	chr19:344787	-0.127	-0.042	0.016	<0.001%
chr19_344272_G_A	chr19:344272	0.011	0.050	0.221	<0.001%
chr19_344810_C_T	chr19:344810	0.114	0.036	0.221	0.0013%
chr19_384030_G_A	chr19:384030	-0.042	-0.044	-0.221	0.0085%
chr19_344348_A_G	chr19:344348	-0.005	-0.026	-0.219	0.0013%
chr19_344760_G_A	chr19:344760	0.081	0.040	0.218	<0.001%
chr19_335255_G_C	chr19:335255	0.092	0.077	0.218	0.0020%
chr19_384088_G_A	chr19:384088	0.068	0.041	0.218	<0.001%
chr19_344353_T_G	chr19:344353	-0.011	-0.027	-0.215	0.0026%
chr19_344617_G_C	chr19:344617	0.055	0.013	0.215	0.0020%
chr19_344751_G_A	chr19:344751	0.057	0.029	0.215	0.0013%
chr19_344403_C_A	chr19:344403	0.002	0.016	0.214	<0.001%
chr19_344943_G_C	chr19:344943	-0.120	-0.070	-0.144	<0.001%
chr19_384037_G_T	chr19:384037	-0.056	-0.032	-0.212	<0.001%
chr19_373435_G_A	chr19:373435	0.032	0.032	0.209	0.0026%
chr19_344718_C_G	chr19:344718	-0.117	0.001	0.016	<0.001%
chr19_335109_C_T	chr19:335109	-0.116	-0.091	-0.206	<0.001%
chr19_344405_G_A	chr19:344405	0.035	0.022	0.205	0.0013%
chr19_344832_G_A	chr19:344832	0.116	0.025	0.137	<0.001%
chr19_344955_G_C	chr19:344955	-0.043	-0.018	-0.204	0.0013%
chr19_344895_C_T	chr19:344895	0.040	0.048	0.204	0.024%
chr19_335195_G_A	chr19:335195	-0.115	-0.185	-0.182	<0.001%
chr19_344331_G_C	chr19:344331	0.024	-0.023	-0.200	0.0020%
chr19_344801_G_A	chr19:344801	-0.112	-0.016	-0.010	0.0020%
chr19_344924_C_T	chr19:344924	0.012	0.003	0.199	0.0020%
chr19_344992_C_G	chr19:344992	-0.097	-0.081	-0.197	0.0013%
chr19_344734_G_C	chr19:344734	0.111	0.027	0.158	<0.001%
chr19_344758_C_T	chr19:344758	0.081	0.023	0.194	<0.001%
chr19_384028_G_A	chr19:384028	-0.053	-0.028	-0.194	0.0085%
chr19_344324_G_T	chr19:344324	0.012	0.024	0.194	0.0020%
chr19_344594_G_A	chr19:344594	0.109	0.004	0.033	0.0014%
chr19_344107_G_T	chr19:344107	0.107	0.062	0.118	<0.001%
chr19_344743_G_A	chr19:344743	0.107	0.016	0.157	0.0013%
chr19_335080_T_C	chr19:335080	0.088	0.030	0.188	0.0072%
chr19_335240_G_A	chr19:335240	0.106	0.022	0.188	<0.001%
chr19_384040_G_A	chr19:384040	-0.041	-0.027	-0.188	0.0020%
chr19_384061_G_A	chr19:384061	-0.035	-0.047	-0.188	<0.001%
chr19_344867_C_T	chr19:344867	-0.106	0.005	-0.014	0.0033%
chr19_344251_G_A	chr19:344251	0.015	0.024	0.186	0.0066%
chr19_344763_C_A	chr19:344763	0.056	0.025	0.186	0.0020%
chr19_344948_G_A	chr19:344948	-0.013	0.017	0.185	0.0020%

Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.