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SLC49A3

This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.

Scored variants near SLC49A3

chr4:581,828..789,151, gene body plus 100 kb. Showing the strongest 200 by effect size.

Variant	Position	PXR	FXR	AhR	AF
chr4_610932_C_A	chr4:610932	0.217	0.198	1.000	<0.001%
chr4_602840_G_A	chr4:602840	-0.526	-0.346	-1.000	0.0013%
chr4_610901_G_A	chr4:610901	-0.232	-0.109	-1.000	<0.001%
chr4_602843_T_A	chr4:602843	0.470	0.223	0.576	<0.001%
chr4_633999_T_G	chr4:633999	-0.084	-0.257	-0.787	—
chr4_602842_G_T	chr4:602842	-0.268	-0.209	-0.732	<0.001%
chr4_617922_C_T	chr4:617922	0.278	0.228	0.688	<0.001%
chr4_610654_C_T	chr4:610654	-0.340	-0.250	-0.541	<0.001%
chr4_610884_G_C	chr4:610884	-0.272	-0.222	-0.582	<0.001%
chr4_602908_C_T	chr4:602908	0.212	0.150	0.576	0.0020%
chr4_602838_T_A	chr4:602838	-0.262	-0.214	-0.547	<0.001%
chr4_610885_G_C	chr4:610885	-0.157	-0.117	-0.535	0.0039%
chr4_611014_G_A	chr4:611014	0.138	0.055	0.524	<0.001%
chr4_602842_G_A	chr4:602842	0.288	0.072	0.271	10.6%
chr4_602852_C_G	chr4:602852	-0.242	-0.170	-0.462	<0.001%
chr4_610956_G_T	chr4:610956	-0.126	-0.041	-0.447	0.011%
chr4_633994_A_G	chr4:633994	-0.034	-0.155	-0.432	—
chr4_617996_G_A	chr4:617996	0.072	0.076	0.400	0.309%
chr4_633997_A_G	chr4:633997	-0.032	-0.139	-0.379	—
chr4_602841_C_T	chr4:602841	-0.103	-0.108	-0.374	<0.001%
chr4_634011_G_C	chr4:634011	0.017	0.122	0.374	—
chr4_610753_C_T	chr4:610753	0.180	0.201	0.365	<0.001%
chr4_634007_G_C	chr4:634007	0.017	0.117	0.365	—
chr4_602819_T_C	chr4:602819	-0.176	-0.171	-0.362	0.0033%
chr4_582086_A_G	chr4:582086	-0.072	-0.091	-0.356	<0.001%
chr4_634011_G_T	chr4:634011	0.019	0.129	0.356	—
chr4_617937_A_T	chr4:617937	-0.081	-0.142	-0.353	0.523%
chr4_618027_C_G	chr4:618027	0.087	0.058	0.347	0.0013%
chr4_634007_G_A	chr4:634007	0.017	0.122	0.347	<0.001%
chr4_634007_G_T	chr4:634007	0.018	0.123	0.347	—
chr4_617995_C_T	chr4:617995	0.069	0.063	0.344	0.0020%
chr4_633989_A_G	chr4:633989	-0.017	-0.104	-0.344	—
chr4_610966_C_G	chr4:610966	-0.101	-0.065	-0.341	<0.001%
chr4_633987_T_G	chr4:633987	-0.032	-0.115	-0.332	<0.001%
chr4_634003_G_C	chr4:634003	-0.002	0.108	0.332	—
chr4_610740_G_T	chr4:610740	-0.187	-0.176	-0.135	<0.001%
chr4_634011_G_A	chr4:634011	0.017	0.122	0.326	—
chr4_610880_C_A	chr4:610880	0.054	0.157	-0.324	0.0013%
chr4_610764_C_T	chr4:610764	0.181	0.161	0.271	0.0020%
chr4_634003_G_A	chr4:634003	0.007	0.110	0.321	<0.001%
chr4_634003_G_T	chr4:634003	0.004	0.109	0.306	—
chr4_634010_G_C	chr4:634010	0.013	0.094	0.306	—
chr4_634008_G_C	chr4:634008	0.017	0.086	0.303	—
chr4_610966_C_T	chr4:610966	-0.076	-0.052	-0.300	<0.001%
chr4_634006_G_C	chr4:634006	0.014	0.094	0.300	—
chr4_634010_G_A	chr4:634010	0.018	0.102	0.294	—
chr4_634010_G_T	chr4:634010	0.017	0.099	0.294	—
chr4_617800_C_T	chr4:617800	0.032	0.010	0.288	<0.001%
chr4_634006_G_A	chr4:634006	0.018	0.102	0.288	—
chr4_610813_C_T	chr4:610813	0.161	0.119	0.259	<0.001%
chr4_610707_G_T	chr4:610707	-0.087	-0.090	-0.276	<0.001%
chr4_617882_C_A	chr4:617882	0.113	0.129	0.276	<0.001%
chr4_634008_G_A	chr4:634008	0.015	0.091	0.274	—
chr4_610610_G_T	chr4:610610	-0.090	-0.108	-0.271	<0.001%
chr4_610787_A_G	chr4:610787	0.068	0.079	0.271	<0.001%
chr4_634004_G_C	chr4:634004	0.011	0.085	0.271	—
chr4_634006_G_T	chr4:634006	0.017	0.098	0.271	—
chr4_610722_A_G	chr4:610722	0.150	0.113	0.247	0.0013%
chr4_634008_G_T	chr4:634008	0.017	0.089	0.262	—
chr4_602935_C_A	chr4:602935	0.145	0.102	0.259	0.0013%
chr4_617814_A_G	chr4:617814	0.042	0.006	0.259	<0.001%
chr4_634002_G_C	chr4:634002	0.008	0.080	0.259	—
chr4_610924_A_G	chr4:610924	0.082	0.100	0.253	0.0013%
chr4_634004_G_T	chr4:634004	0.011	0.085	0.253	0.0020%
chr4_610694_C_G	chr4:610694	-0.142	-0.121	-0.188	0.0099%
chr4_610899_G_A	chr4:610899	0.077	0.049	0.247	0.104%
chr4_610975_C_T	chr4:610975	-0.052	-0.033	-0.247	0.0039%
chr4_617944_G_A	chr4:617944	0.065	0.081	0.247	0.0013%
chr4_634004_G_A	chr4:634004	0.008	0.081	0.247	—
chr4_634012_G_C	chr4:634012	0.009	0.084	0.247	—
chr4_582026_G_C	chr4:582026	-0.034	-0.160	-0.244	<0.001%
chr4_617828_A_G	chr4:617828	0.124	0.165	0.241	<0.001%
chr4_634012_G_T	chr4:634012	0.012	0.090	0.241	<0.001%
chr4_618003_G_A	chr4:618003	-0.039	-0.019	-0.232	0.0013%
chr4_618090_C_G	chr4:618090	0.053	0.074	0.232	<0.001%
chr4_633985_A_G	chr4:633985	-0.010	-0.072	-0.232	—
chr4_610808_A_G	chr4:610808	-0.089	-0.079	-0.224	<0.001%
chr4_634002_G_A	chr4:634002	0.009	0.079	0.224	—
chr4_634002_G_T	chr4:634002	0.015	0.077	0.224	—
chr4_610615_G_A	chr4:610615	-0.123	-0.063	-0.212	0.032%
chr4_617844_C_T	chr4:617844	-0.055	-0.091	-0.218	0.0013%
chr4_617899_A_G	chr4:617899	-0.077	-0.062	-0.218	2.56%
chr4_618074_G_A	chr4:618074	0.028	0.043	0.215	<0.001%
chr4_610922_C_T	chr4:610922	-0.015	-0.011	-0.212	<0.001%
chr4_634012_G_A	chr4:634012	0.013	0.085	0.212	0.178%
chr4_602855_T_C	chr4:602855	-0.117	-0.048	-0.162	<0.001%
chr4_602729_G_C	chr4:602729	0.047	0.020	0.206	<0.001%
chr4_610935_T_C	chr4:610935	0.045	0.041	0.206	0.0013%
chr4_617806_A_C	chr4:617806	-0.034	-0.053	-0.206	<0.001%
chr4_617850_C_T	chr4:617850	-0.061	-0.016	-0.206	<0.001%
chr4_617817_T_C	chr4:617817	0.040	0.046	0.200	0.0013%
chr4_617837_C_G	chr4:617837	-0.064	-0.099	-0.197	0.0013%
chr4_617866_C_G	chr4:617866	0.057	0.049	0.194	<0.001%
chr4_617918_G_A	chr4:617918	-0.056	-0.048	-0.194	0.0020%
chr4_602859_G_C	chr4:602859	0.105	0.071	0.138	0.0039%
chr4_618005_A_G	chr4:618005	-0.028	-0.033	-0.185	0.0026%
chr4_610659_G_T	chr4:610659	-0.069	-0.041	-0.182	<0.001%
chr4_618013_C_T	chr4:618013	-0.014	0.019	-0.182	0.0013%
chr4_602810_C_G	chr4:602810	0.082	0.052	0.176	<0.001%
chr4_610788_T_C	chr4:610788	0.060	0.053	0.176	<0.001%
chr4_602844_G_A	chr4:602844	0.099	0.075	0.129	0.0020%
chr4_618085_A_G	chr4:618085	0.099	0.042	0.012	<0.001%
chr4_633981_T_G	chr4:633981	-0.009	-0.049	-0.174	—
chr4_610840_G_A	chr4:610840	0.085	0.052	0.171	0.012%
chr4_617884_A_G	chr4:617884	-0.072	-0.079	-0.171	2.38%
chr4_618037_T_C	chr4:618037	0.011	0.015	0.168	0.0013%
chr4_610850_G_A	chr4:610850	0.045	0.006	0.165	<0.001%
chr4_617833_C_G	chr4:617833	-0.079	-0.086	-0.165	<0.001%
chr4_618137_C_T	chr4:618137	-0.020	-0.043	-0.165	0.0013%
chr4_610522_T_G	chr4:610522	0.053	0.009	0.159	0.0013%
chr4_610737_A_T	chr4:610737	0.029	0.075	0.159	<0.001%
chr4_617834_G_C	chr4:617834	-0.041	-0.084	-0.159	0.0026%
chr4_617838_G_A	chr4:617838	0.038	0.033	0.159	<0.001%
chr4_617857_C_T	chr4:617857	-0.066	-0.057	-0.159	<0.001%
chr4_618148_G_C	chr4:618148	0.083	0.109	0.159	<0.001%
chr4_610958_A_C	chr4:610958	-0.089	-0.057	-0.141	<0.001%
chr4_610734_A_G	chr4:610734	-0.088	-0.052	-0.012	0.028%
chr4_633961_A_G	chr4:633961	-0.007	-0.015	-0.150	—
chr4_634009_T_A	chr4:634009	0.006	0.049	0.150	—
chr4_582031_C_T	chr4:582031	-0.041	-0.099	-0.147	<0.001%
chr4_610528_C_A	chr4:610528	-0.032	-0.029	-0.147	<0.001%
chr4_610735_C_T	chr4:610735	-0.080	-0.086	-0.147	0.0026%
chr4_610986_G_A	chr4:610986	-0.059	-0.056	-0.147	0.018%
chr4_617826_G_T	chr4:617826	-0.033	-0.046	-0.147	<0.001%
chr4_602775_A_C	chr4:602775	-0.082	-0.065	-0.076	0.029%
chr4_602829_G_A	chr4:602829	-0.067	-0.042	-0.144	<0.001%
chr4_610819_T_C	chr4:610819	0.082	0.025	0.141	0.041%
chr4_582137_T_C	chr4:582137	0.077	0.150	0.141	<0.001%
chr4_617860_G_T	chr4:617860	-0.063	-0.034	-0.141	<0.001%
chr4_618059_C_T	chr4:618059	0.016	0.020	0.141	0.0099%
chr4_602796_C_G	chr4:602796	0.076	0.025	0.094	0.0039%
chr4_634005_T_A	chr4:634005	0.005	0.057	0.132	—
chr4_618016_G_A	chr4:618016	-0.015	-0.016	-0.129	<0.001%
chr4_618085_A_C	chr4:618085	0.073	-0.001	-0.056	<0.001%
chr4_617941_T_G	chr4:617941	-0.072	-0.051	-0.065	<0.001%
chr4_581984_T_C	chr4:581984	0.038	0.061	0.126	0.0013%
chr4_610562_C_A	chr4:610562	0.033	0.069	0.124	0.043%
chr4_610614_C_T	chr4:610614	-0.032	-0.011	-0.124	0.0013%
chr4_633993_T_G	chr4:633993	-0.008	-0.049	-0.124	—
chr4_611319_G_A	chr4:611319	0.012	0.014	0.121	0.206%
chr4_582034_T_A	chr4:582034	-0.007	-0.061	-0.118	0.060%
chr4_610699_C_G	chr4:610699	0.047	0.049	0.118	0.0039%
chr4_617834_G_A	chr4:617834	-0.037	-0.055	-0.118	0.412%
chr4_634009_T_G	chr4:634009	0.002	0.061	0.115	—
chr4_582144_T_C	chr4:582144	0.064	0.107	0.088	0.0039%
chr4_610557_A_C	chr4:610557	-0.048	-0.038	-0.112	0.0013%
chr4_610659_G_A	chr4:610659	-0.062	-0.010	-0.053	0.022%
chr4_602883_C_A	chr4:602883	-0.028	-0.024	-0.109	0.0013%
chr4_618079_T_C	chr4:618079	-0.061	-0.010	0.062	<0.001%
chr4_581919_A_G	chr4:581919	0.040	0.069	0.106	0.0013%
chr4_581962_C_A	chr4:581962	0.010	-0.084	-0.106	<0.001%
chr4_610644_C_G	chr4:610644	-0.060	-0.049	-0.041	<0.001%
chr4_610647_T_A	chr4:610647	-0.036	-0.029	-0.106	<0.001%
chr4_610897_G_C	chr4:610897	0.034	0.055	-0.106	<0.001%
chr4_618020_C_T	chr4:618020	-0.017	-0.005	-0.106	0.0066%
chr4_581946_G_T	chr4:581946	-0.016	-0.071	-0.103	<0.001%
chr4_602890_G_C	chr4:602890	-0.057	-0.029	-0.085	<0.001%
chr4_610747_G_A	chr4:610747	-0.057	-0.056	-0.065	<0.001%
chr4_602511_G_T	chr4:602511	-0.010	-0.004	-0.100	0.0026%
chr4_602891_G_A	chr4:602891	-0.047	-0.020	-0.100	<0.001%
chr4_610898_C_A	chr4:610898	-0.034	-0.029	-0.100	<0.001%
chr4_618026_C_T	chr4:618026	0.008	0.005	0.100	0.0013%
chr4_618191_G_T	chr4:618191	-0.001	-0.018	-0.100	<0.001%
chr4_602786_A_G	chr4:602786	0.056	0.008	0.076	0.0013%
chr4_610972_C_G	chr4:610972	-0.056	-0.037	-0.094	0.0079%
chr4_581878_A_G	chr4:581878	0.000	-0.008	0.097	0.0026%
chr4_618007_C_T	chr4:618007	-0.007	-0.006	-0.097	0.0013%
chr4_618066_G_T	chr4:618066	-0.005	0.018	0.097	<0.001%
chr4_633984_G_C	chr4:633984	0.000	0.020	0.097	—
chr4_634001_A_G	chr4:634001	-0.001	-0.023	-0.097	—
chr4_602895_C_T	chr4:602895	0.043	0.055	0.094	<0.001%
chr4_610964_G_A	chr4:610964	0.023	0.028	0.094	<0.001%
chr4_618014_G_A	chr4:618014	0.002	0.014	0.094	0.334%
chr4_618024_G_T	chr4:618024	-0.039	-0.019	-0.094	<0.001%
chr4_618165_G_A	chr4:618165	0.018	0.025	0.094	<0.001%
chr4_633998_G_C	chr4:633998	0.011	0.032	0.094	—
chr4_610810_C_A	chr4:610810	-0.052	-0.048	-0.071	0.0013%
chr4_602920_G_A	chr4:602920	-0.051	0.006	-0.059	<0.001%
chr4_602881_C_T	chr4:602881	0.050	0.049	0.050	0.011%
chr4_610548_C_T	chr4:610548	-0.003	-0.020	-0.088	<0.001%
chr4_610658_C_T	chr4:610658	0.030	0.105	0.088	0.0099%
chr4_610784_A_G	chr4:610784	0.042	0.030	0.088	<0.001%
chr4_617996_G_C	chr4:617996	-0.009	-0.003	-0.088	0.0020%
chr4_618216_C_T	chr4:618216	-0.020	-0.025	-0.088	<0.001%
chr4_628554_C_A	chr4:628554	-0.003	-0.013	-0.088	0.0013%
chr4_628583_C_G	chr4:628583	-0.004	0.000	-0.088	<0.001%
chr4_634016_C_T	chr4:634016	-0.011	-0.032	-0.088	0.0013%
chr4_618064_C_T	chr4:618064	-0.029	-0.010	-0.085	<0.001%
chr4_633962_G_C	chr4:633962	0.006	0.011	0.085	0.0026%
chr4_633965_G_C	chr4:633965	0.008	0.010	0.085	—
chr4_634001_A_T	chr4:634001	0.001	0.027	0.085	—
chr4_634018_C_T	chr4:634018	-0.007	-0.025	-0.085	0.024%
chr4_581879_T_G	chr4:581879	-0.047	-0.056	-0.038	<0.001%
chr4_582158_T_C	chr4:582158	-0.047	-0.070	-0.037	<0.001%
chr4_610594_C_T	chr4:610594	-0.047	-0.032	-0.059	0.0013%
chr4_581925_T_C	chr4:581925	-0.035	-0.103	-0.082	<0.001%
chr4_582054_G_T	chr4:582054	-0.017	-0.103	-0.082	0.0013%
chr4_602765_A_C	chr4:602765	0.032	0.009	0.082	<0.001%
chr4_602797_A_G	chr4:602797	0.047	0.019	0.082	<0.001%
chr4_602878_C_A	chr4:602878	-0.038	-0.022	-0.082	0.040%

Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.