SLC6A18

Scored variants near SLC6A18

chr5:1,125,380..1,346,189, gene body plus 100 kb. Showing the strongest 200 by effect size.

Variant	Position	PXR	FXR	AhR	AF
chr5_1140493_G_A	chr5:1140493	-1.000	-1.000	-1.000	0.0010%
chr5_1140484_C_T	chr5:1140484	-1.000	-1.000	-1.000	<0.001%
chr5_1140485_C_G	chr5:1140485	-1.000	-1.000	-1.000	0.0018%
chr5_1140485_C_T	chr5:1140485	-1.000	-1.000	-1.000	<0.001%
chr5_1161343_A_T	chr5:1161343	-0.298	-0.487	-1.000	0.079%
chr5_1138778_G_T	chr5:1138778	0.973	1.000	1.000	<0.001%
chr5_1130733_A_C	chr5:1130733	0.511	0.671	1.000	0.0013%
chr5_1140472_G_C	chr5:1140472	-0.834	-0.338	-0.647	0.024%
chr5_1161346_C_T	chr5:1161346	-0.174	-0.416	-1.000	0.0013%
chr5_1130458_C_T	chr5:1130458	0.153	0.292	1.000	<0.001%
chr5_1140481_G_A	chr5:1140481	-0.589	-0.277	-0.459	<0.001%
chr5_1142073_G_A	chr5:1142073	0.272	0.189	0.910	0.0013%
chr5_1130449_C_T	chr5:1130449	0.083	0.154	0.800	0.156%
chr5_1161369_A_C	chr5:1161369	-0.211	-0.244	-0.794	<0.001%
chr5_1140501_G_A	chr5:1140501	0.443	0.221	0.518	0.017%
chr5_1140560_G_A	chr5:1140560	-0.436	-0.180	-0.224	<0.001%
chr5_1138712_C_T	chr5:1138712	0.294	0.377	0.700	<0.001%
chr5_1140551_C_A	chr5:1140551	0.393	0.165	0.259	<0.001%
chr5_1130860_C_T	chr5:1130860	0.170	0.222	0.624	0.0039%
chr5_1142069_G_C	chr5:1142069	0.073	0.044	0.569	<0.001%
chr5_1131104_G_A	chr5:1131104	0.193	0.321	0.559	0.225%
chr5_1140498_G_A	chr5:1140498	0.313	0.132	0.165	0.0032%
chr5_1130841_T_A	chr5:1130841	0.128	0.152	0.547	<0.001%
chr5_1155999_G_A	chr5:1155999	0.111	0.103	0.533	0.0020%
chr5_1140526_C_A	chr5:1140526	-0.300	-0.104	-0.165	0.0026%
chr5_1130478_C_G	chr5:1130478	0.025	0.130	0.518	<0.001%
chr5_1130461_A_T	chr5:1130461	0.073	0.135	0.512	<0.001%
chr5_1130781_G_T	chr5:1130781	0.166	0.165	0.494	<0.001%
chr5_1138716_C_T	chr5:1138716	0.269	0.315	0.494	0.0013%
chr5_1138767_T_C	chr5:1138767	0.277	0.346	0.447	<0.001%
chr5_1140552_G_A	chr5:1140552	-0.265	-0.117	-0.359	0.0033%
chr5_1130832_C_A	chr5:1130832	0.123	0.180	0.459	0.0013%
chr5_1142137_C_G	chr5:1142137	0.194	0.139	0.440	0.0013%
chr5_1130805_G_T	chr5:1130805	0.025	0.048	0.418	0.0046%
chr5_1161324_C_T	chr5:1161324	-0.113	-0.127	-0.418	0.011%
chr5_1140458_C_T	chr5:1140458	-0.235	-0.071	-0.153	0.0013%
chr5_1130471_A_G	chr5:1130471	0.042	0.102	0.412	0.0025%
chr5_1138798_G_A	chr5:1138798	-0.182	-0.316	-0.406	<0.001%
chr5_1130776_G_A	chr5:1130776	0.027	0.028	0.400	0.0020%
chr5_1138770_A_C	chr5:1138770	0.225	0.268	0.400	0.0099%
chr5_1130457_C_A	chr5:1130457	0.042	0.080	0.388	<0.001%
chr5_1130474_C_T	chr5:1130474	0.057	0.107	0.382	<0.001%
chr5_1155218_G_C	chr5:1155218	0.012	0.027	0.379	<0.001%
chr5_1161349_C_T	chr5:1161349	-0.022	-0.067	-0.376	0.0072%
chr5_1161335_T_A	chr5:1161335	-0.208	-0.341	-0.341	<0.001%
chr5_1161349_C_A	chr5:1161349	-0.017	-0.043	-0.365	0.0020%
chr5_1155945_G_A	chr5:1155945	0.046	0.098	0.358	<0.001%
chr5_1130807_G_A	chr5:1130807	-0.121	-0.128	-0.353	0.0039%
chr5_1131128_C_G	chr5:1131128	0.156	0.124	0.353	14.5%
chr5_1141991_C_A	chr5:1141991	0.133	0.151	0.344	0.0053%
chr5_1138711_G_A	chr5:1138711	-0.174	-0.289	-0.341	<0.001%
chr5_1161311_C_T	chr5:1161311	0.000	0.195	0.341	0.269%
chr5_1161316_C_A	chr5:1161316	0.082	0.016	-0.341	0.0046%
chr5_1161192_G_A	chr5:1161192	0.086	0.164	0.335	0.0085%
chr5_1138655_A_C	chr5:1138655	-0.189	-0.155	-0.182	<0.001%
chr5_1140480_G_A	chr5:1140480	-0.188	-0.114	-0.047	0.032%
chr5_1130642_C_G	chr5:1130642	-0.046	-0.065	-0.329	0.0013%
chr5_1130812_A_C	chr5:1130812	-0.090	-0.096	-0.329	<0.001%
chr5_1140611_G_C	chr5:1140611	-0.186	-0.096	-0.071	0.019%
chr5_1161197_G_A	chr5:1161197	0.096	0.161	0.329	0.033%
chr5_1130773_G_A	chr5:1130773	0.080	0.033	0.324	<0.001%
chr5_1140509_C_T	chr5:1140509	0.176	0.132	0.259	<0.001%
chr5_1140583_G_T	chr5:1140583	0.175	0.099	0.129	0.0020%
chr5_1141991_C_T	chr5:1141991	0.073	0.078	0.309	0.416%
chr5_1130450_G_T	chr5:1130450	0.083	0.016	0.306	<0.001%
chr5_1130514_G_A	chr5:1130514	0.072	0.095	0.306	0.0020%
chr5_1131021_G_A	chr5:1131021	0.013	0.077	0.306	0.0013%
chr5_1138625_C_T	chr5:1138625	-0.167	-0.228	-0.306	0.0013%
chr5_1138688_G_A	chr5:1138688	-0.116	-0.141	-0.306	<0.001%
chr5_1130811_G_T	chr5:1130811	-0.138	-0.129	-0.300	<0.001%
chr5_1155342_C_A	chr5:1155342	0.023	0.063	0.299	0.0013%
chr5_1140401_G_A	chr5:1140401	-0.166	-0.086	0.012	0.0053%
chr5_1140615_T_A	chr5:1140615	-0.166	-0.086	-0.141	<0.001%
chr5_1161382_T_C	chr5:1161382	-0.053	-0.201	-0.294	0.0020%
chr5_1161302_C_A	chr5:1161302	0.165	-0.047	0.094	<0.001%
chr5_1130676_C_G	chr5:1130676	0.015	0.025	0.288	<0.001%
chr5_1161196_C_T	chr5:1161196	0.036	0.168	0.288	0.0066%
chr5_1131022_G_A	chr5:1131022	0.025	0.062	0.282	<0.001%
chr5_1138671_C_T	chr5:1138671	-0.160	-0.190	-0.235	2.24%
chr5_1140457_G_T	chr5:1140457	0.160	0.048	0.047	<0.001%
chr5_1155221_C_T	chr5:1155221	0.036	0.049	0.282	<0.001%
chr5_1138717_G_A	chr5:1138717	-0.157	-0.202	-0.265	0.0013%
chr5_1161199_A_G	chr5:1161199	0.069	0.136	0.276	<0.001%
chr5_1161370_C_A	chr5:1161370	-0.060	-0.082	-0.276	<0.001%
chr5_1156232_C_T	chr5:1156232	0.032	0.055	0.274	<0.001%
chr5_1140441_G_T	chr5:1140441	0.097	-0.038	0.271	<0.001%
chr5_1140579_T_C	chr5:1140579	-0.153	-0.076	-0.118	0.0013%
chr5_1161371_C_G	chr5:1161371	0.088	0.049	0.271	0.0046%
chr5_1130821_T_C	chr5:1130821	-0.108	-0.089	-0.265	<0.001%
chr5_1138625_C_A	chr5:1138625	-0.150	-0.212	-0.235	6.05%
chr5_1140555_A_G	chr5:1140555	-0.148	-0.081	0.047	<0.001%
chr5_1140374_T_A	chr5:1140374	0.146	0.043	0.153	<0.001%
chr5_1161253_G_A	chr5:1161253	-0.027	-0.055	-0.259	0.0013%
chr5_1142091_C_T	chr5:1142091	-0.077	-0.101	-0.256	<0.001%
chr5_1155220_C_T	chr5:1155220	0.040	0.041	0.256	0.0020%
chr5_1142087_A_G	chr5:1142087	-0.091	-0.107	-0.255	0.034%
chr5_1130769_G_A	chr5:1130769	0.067	0.100	0.253	<0.001%
chr5_1138605_G_C	chr5:1138605	-0.095	-0.096	-0.253	<0.001%
chr5_1155600_C_T	chr5:1155600	0.040	0.048	0.253	0.0020%
chr5_1138609_G_A	chr5:1138609	0.141	0.147	0.159	0.0033%
chr5_1138603_T_G	chr5:1138603	-0.132	-0.143	-0.247	0.0013%
chr5_1140526_C_T	chr5:1140526	-0.140	-0.061	0.035	0.054%
chr5_1155914_C_G	chr5:1155914	-0.071	-0.037	-0.246	<0.001%
chr5_1140365_G_A	chr5:1140365	-0.138	-0.008	0.118	0.0059%
chr5_1130799_C_T	chr5:1130799	-0.100	-0.080	-0.241	0.0059%
chr5_1138757_G_A	chr5:1138757	0.102	0.104	0.241	<0.001%
chr5_1155928_C_T	chr5:1155928	-0.086	-0.056	-0.240	0.0014%
chr5_1155350_C_G	chr5:1155350	0.059	0.106	0.237	<0.001%
chr5_1138238_G_A	chr5:1138238	-0.057	-0.109	-0.235	0.0020%
chr5_1130848_G_A	chr5:1130848	-0.131	-0.084	-0.124	0.0020%
chr5_1130853_A_C	chr5:1130853	0.047	0.013	0.229	<0.001%
chr5_1130861_G_A	chr5:1130861	0.045	0.001	-0.229	0.0033%
chr5_1130861_G_T	chr5:1130861	-0.073	-0.023	-0.229	0.163%
chr5_1161332_A_G	chr5:1161332	-0.128	-0.235	0.118	<0.001%
chr5_1130884_G_A	chr5:1130884	0.003	0.014	0.224	<0.001%
chr5_1138720_T_C	chr5:1138720	-0.111	-0.150	-0.224	0.453%
chr5_1161315_G_A	chr5:1161315	0.005	-0.033	-0.224	0.022%
chr5_1142060_G_A	chr5:1142060	-0.075	-0.109	-0.220	<0.001%
chr5_1130616_A_C	chr5:1130616	0.123	0.081	0.200	<0.001%
chr5_1130729_G_A	chr5:1130729	-0.123	-0.015	-0.206	0.0013%
chr5_1130912_A_C	chr5:1130912	-0.028	-0.063	-0.218	0.0013%
chr5_1142080_G_A	chr5:1142080	0.085	0.082	0.217	0.0013%
chr5_1155954_A_T	chr5:1155954	-0.048	-0.044	-0.216	0.0012%
chr5_1130621_G_A	chr5:1130621	0.045	0.038	0.212	0.0020%
chr5_1140406_T_C	chr5:1140406	-0.110	0.015	-0.212	<0.001%
chr5_1140581_A_C	chr5:1140581	0.068	0.033	0.212	0.0020%
chr5_1140619_C_T	chr5:1140619	-0.120	-0.079	-0.106	0.0020%
chr5_1142079_G_C	chr5:1142079	0.076	0.067	0.210	<0.001%
chr5_1155993_G_C	chr5:1155993	0.030	0.037	0.208	0.0040%
chr5_1161317_C_T	chr5:1161317	0.082	-0.003	-0.206	<0.001%
chr5_1140534_C_T	chr5:1140534	-0.115	-0.074	-0.129	0.0013%
chr5_1155908_G_A	chr5:1155908	0.052	0.056	0.201	<0.001%
chr5_1140393_C_T	chr5:1140393	0.067	-0.020	0.200	0.0026%
chr5_1140551_C_T	chr5:1140551	-0.098	-0.013	-0.200	0.0020%
chr5_1161314_C_T	chr5:1161314	0.103	0.103	-0.200	0.0079%
chr5_1140387_T_C	chr5:1140387	0.111	0.036	0.071	58.6%
chr5_1155580_C_T	chr5:1155580	0.066	0.060	0.196	0.0020%
chr5_1138262_T_G	chr5:1138262	0.037	0.118	-0.194	0.012%
chr5_1138481_C_A	chr5:1138481	0.076	0.109	0.194	<0.001%
chr5_1138631_C_G	chr5:1138631	-0.106	-0.209	-0.194	0.0013%
chr5_1140460_G_A	chr5:1140460	-0.110	-0.028	-0.165	<0.001%
chr5_1155965_G_A	chr5:1155965	0.038	0.020	0.193	<0.001%
chr5_1156054_C_G	chr5:1156054	-0.072	-0.091	-0.193	0.0013%
chr5_1156017_G_A	chr5:1156017	0.010	0.039	0.192	0.0033%
chr5_1140367_G_A	chr5:1140367	-0.108	-0.015	-0.106	<0.001%
chr5_1155988_C_T	chr5:1155988	-0.053	-0.043	-0.191	<0.001%
chr5_1138559_C_T	chr5:1138559	0.107	0.114	0.112	0.283%
chr5_1155926_G_A	chr5:1155926	0.047	0.044	0.189	<0.001%
chr5_1130472_G_C	chr5:1130472	-0.005	-0.029	-0.188	<0.001%
chr5_1138617_C_G	chr5:1138617	-0.034	0.009	0.188	<0.001%
chr5_1140391_C_T	chr5:1140391	0.106	0.008	0.082	0.0039%
chr5_1142097_C_G	chr5:1142097	0.068	0.061	0.186	<0.001%
chr5_1140362_C_A	chr5:1140362	-0.105	-0.043	0.071	<0.001%
chr5_1155554_G_A	chr5:1155554	0.018	0.029	0.185	<0.001%
chr5_1155556_G_A	chr5:1155556	0.024	0.018	0.185	0.0020%
chr5_1155955_G_T	chr5:1155955	-0.077	-0.042	-0.185	0.0011%
chr5_1142062_C_T	chr5:1142062	-0.080	-0.081	-0.185	0.0099%
chr5_1130430_A_T	chr5:1130430	0.104	-0.007	-0.141	<0.001%
chr5_1155522_G_A	chr5:1155522	0.010	0.029	0.184	0.0033%
chr5_1130363_C_A	chr5:1130363	0.023	0.020	0.182	0.0013%
chr5_1138196_G_A	chr5:1138196	0.026	0.061	0.182	0.019%
chr5_1138198_A_G	chr5:1138198	-0.005	-0.066	0.182	0.0034%
chr5_1138370_C_G	chr5:1138370	-0.051	-0.041	-0.182	<0.001%
chr5_1138608_C_T	chr5:1138608	0.083	0.061	0.182	0.013%
chr5_1161352_A_G	chr5:1161352	-0.048	-0.062	-0.182	0.0013%
chr5_1155623_G_T	chr5:1155623	0.007	0.025	0.182	0.0013%
chr5_1156002_G_A	chr5:1156002	0.007	0.032	0.182	0.367%
chr5_1142072_G_A	chr5:1142072	-0.075	-0.070	-0.180	0.0013%
chr5_1130803_A_C	chr5:1130803	-0.101	-0.086	-0.024	0.0079%
chr5_1140614_T_C	chr5:1140614	-0.101	-0.044	-0.047	<0.001%
chr5_1155992_C_G	chr5:1155992	0.012	0.016	0.177	<0.001%
chr5_1130621_G_T	chr5:1130621	0.048	0.033	0.176	0.020%
chr5_1130956_A_G	chr5:1130956	-0.023	-0.033	-0.176	<0.001%
chr5_1138697_G_A	chr5:1138697	0.100	0.121	0.147	0.0013%
chr5_1140441_G_A	chr5:1140441	0.095	-0.043	0.176	0.0046%
chr5_1155577_A_C	chr5:1155577	0.099	0.044	0.052	<0.001%
chr5_1138792_G_A	chr5:1138792	0.098	0.047	0.141	<0.001%
chr5_1161350_G_A	chr5:1161350	-0.098	-0.055	-0.024	0.0020%
chr5_1155286_C_G	chr5:1155286	-0.040	-0.059	-0.172	<0.001%
chr5_1155561_C_A	chr5:1155561	0.064	0.058	0.172	0.0013%
chr5_1155631_C_A	chr5:1155631	0.031	0.029	0.172	1.46%
chr5_1155910_A_C	chr5:1155910	-0.031	-0.029	-0.172	0.0087%
chr5_1142135_C_A	chr5:1142135	0.089	0.083	0.171	<0.001%
chr5_1155787_G_A	chr5:1155787	0.097	0.057	0.163	0.0013%
chr5_1130775_C_T	chr5:1130775	-0.028	-0.069	-0.171	14.5%
chr5_1138779_G_A	chr5:1138779	-0.064	-0.082	-0.171	<0.001%
chr5_1155605_C_T	chr5:1155605	0.029	0.025	0.170	<0.001%
chr5_1155549_G_A	chr5:1155549	0.018	0.030	0.169	<0.001%
chr5_1156022_G_A	chr5:1156022	-0.001	0.031	0.168	0.0033%
chr5_1155921_G_A	chr5:1155921	0.048	0.038	0.166	<0.001%
chr5_1138551_C_G	chr5:1138551	0.030	0.046	0.165	0.0026%
chr5_1140397_C_T	chr5:1140397	0.088	0.030	0.165	0.0026%
chr5_1161251_G_A	chr5:1161251	0.053	0.053	0.165	0.0026%
chr5_1138715_C_A	chr5:1138715	0.092	0.060	0.153	<0.001%
chr5_1140562_A_C	chr5:1140562	-0.092	-0.033	-0.047	<0.001%
chr5_1140620_G_A	chr5:1140620	-0.092	-0.022	-0.059	0.227%
chr5_1156026_G_A	chr5:1156026	0.032	0.035	0.161	<0.001%
chr5_1155579_C_A	chr5:1155579	0.054	0.036	0.161	0.0013%
chr5_1155965_G_C	chr5:1155965	0.052	0.023	0.160	0.0020%
chr5_1138225_G_A	chr5:1138225	-0.051	-0.072	-0.159	0.0046%

Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.