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SLC9A3
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near SLC9A3
chr5:370,455..624,449, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr5_373841_C_G | chr5:373841 | -0.261 | -0.041 | -1.000 | <0.001% |
| chr5_373897_G_A | chr5:373897 | 0.379 | 0.113 | 1.000 | <0.001% |
| chr5_373832_G_A | chr5:373832 | -0.190 | 0.003 | -1.000 | <0.001% |
| chr5_373644_A_G | chr5:373644 | -0.092 | -0.101 | -0.988 | — |
| chr5_373642_A_G | chr5:373642 | -0.093 | -0.099 | -0.979 | — |
| chr5_373895_T_C | chr5:373895 | -0.136 | -0.062 | -0.922 | 0.0013% |
| chr5_373899_G_C | chr5:373899 | -0.182 | -0.057 | -0.863 | 0.0053% |
| chr5_373817_G_C | chr5:373817 | 0.205 | 0.049 | 0.779 | 0.0013% |
| chr5_373905_G_T | chr5:373905 | 0.201 | 0.048 | 0.754 | 0.0013% |
| chr5_373860_G_A | chr5:373860 | 0.116 | 0.049 | 0.735 | <0.001% |
| chr5_373835_G_C | chr5:373835 | -0.174 | -0.028 | -0.699 | 0.0040% |
| chr5_373597_A_G | chr5:373597 | -0.069 | -0.058 | -0.671 | — |
| chr5_373647_T_G | chr5:373647 | -0.123 | -0.044 | -0.665 | — |
| chr5_373896_C_A | chr5:373896 | -0.206 | -0.051 | -0.656 | 0.0040% |
| chr5_373870_C_G | chr5:373870 | -0.129 | -0.006 | -0.615 | 0.0013% |
| chr5_373877_G_C | chr5:373877 | 0.146 | 0.033 | 0.512 | 0.0040% |
| chr5_373638_C_G | chr5:373638 | -0.053 | -0.037 | -0.509 | — |
| chr5_373885_G_C | chr5:373885 | -0.133 | -0.018 | -0.506 | <0.001% |
| chr5_373589_C_G | chr5:373589 | -0.083 | -0.060 | -0.503 | — |
| chr5_373639_T_G | chr5:373639 | -0.052 | -0.052 | -0.491 | — |
| chr5_373892_C_T | chr5:373892 | 0.125 | 0.014 | 0.465 | 0.0013% |
| chr5_373795_C_T | chr5:373795 | 0.027 | 0.036 | 0.447 | <0.001% |
| chr5_373872_C_T | chr5:373872 | 0.074 | 0.043 | 0.438 | <0.001% |
| chr5_373866_T_G | chr5:373866 | -0.087 | -0.022 | -0.426 | 0.0027% |
| chr5_373629_A_G | chr5:373629 | -0.043 | -0.039 | -0.424 | — |
| chr5_373779_C_T | chr5:373779 | 0.076 | 0.032 | 0.412 | <0.001% |
| chr5_373711_G_T | chr5:373711 | 0.032 | 0.022 | 0.400 | <0.001% |
| chr5_373783_C_T | chr5:373783 | 0.047 | 0.015 | 0.394 | <0.001% |
| chr5_373626_A_G | chr5:373626 | -0.036 | -0.032 | -0.388 | — |
| chr5_373884_G_T | chr5:373884 | -0.084 | 0.002 | -0.385 | <0.001% |
| chr5_373828_T_G | chr5:373828 | -0.064 | -0.008 | -0.371 | <0.001% |
| chr5_373727_C_G | chr5:373727 | -0.078 | -0.029 | -0.365 | 0.0013% |
| chr5_373881_C_T | chr5:373881 | 0.034 | 0.032 | 0.362 | 0.0013% |
| chr5_373847_C_T | chr5:373847 | -0.193 | -0.030 | -0.350 | <0.001% |
| chr5_373764_C_T | chr5:373764 | 0.014 | 0.017 | 0.329 | 0.0013% |
| chr5_373713_G_A | chr5:373713 | 0.022 | 0.015 | 0.326 | <0.001% |
| chr5_373809_C_T | chr5:373809 | 0.033 | 0.013 | 0.324 | 0.271% |
| chr5_373594_C_G | chr5:373594 | -0.016 | -0.023 | -0.315 | — |
| chr5_373765_G_T | chr5:373765 | 0.012 | 0.017 | 0.315 | <0.001% |
| chr5_373895_T_A | chr5:373895 | -0.058 | -0.022 | -0.315 | 0.0013% |
| chr5_373602_G_C | chr5:373602 | 0.073 | 0.030 | 0.297 | 0.0033% |
| chr5_373707_G_A | chr5:373707 | 0.020 | 0.020 | 0.279 | 0.0013% |
| chr5_373801_G_T | chr5:373801 | 0.014 | 0.011 | 0.279 | <0.001% |
| chr5_373772_C_T | chr5:373772 | 0.012 | 0.016 | 0.276 | 0.018% |
| chr5_373533_C_A | chr5:373533 | -0.037 | -0.007 | -0.274 | — |
| chr5_373757_C_T | chr5:373757 | -0.016 | 0.014 | 0.265 | <0.001% |
| chr5_373636_G_C | chr5:373636 | 0.034 | 0.034 | 0.262 | — |
| chr5_373766_C_T | chr5:373766 | 0.017 | 0.016 | 0.262 | 0.0033% |
| chr5_373749_C_T | chr5:373749 | 0.022 | 0.015 | 0.259 | 0.0086% |
| chr5_373633_T_G | chr5:373633 | -0.019 | -0.020 | -0.256 | <0.001% |
| chr5_373837_C_T | chr5:373837 | 0.027 | 0.023 | 0.256 | <0.001% |
| chr5_373602_G_A | chr5:373602 | 0.061 | 0.012 | 0.253 | — |
| chr5_373740_C_A | chr5:373740 | 0.034 | 0.019 | 0.253 | 0.017% |
| chr5_373600_G_C | chr5:373600 | 0.082 | 0.021 | 0.250 | — |
| chr5_373773_G_A | chr5:373773 | 0.008 | 0.020 | 0.250 | <0.001% |
| chr5_373800_C_T | chr5:373800 | 0.026 | -0.015 | 0.250 | <0.001% |
| chr5_373835_G_A | chr5:373835 | 0.012 | 0.015 | 0.247 | 0.0020% |
| chr5_373636_G_A | chr5:373636 | 0.028 | 0.027 | 0.244 | — |
| chr5_373721_G_T | chr5:373721 | 0.021 | 0.012 | 0.244 | <0.001% |
| chr5_373764_C_G | chr5:373764 | 0.024 | 0.014 | 0.238 | <0.001% |
| chr5_373852_G_A | chr5:373852 | -0.115 | -0.007 | -0.238 | 0.0020% |
| chr5_373636_G_T | chr5:373636 | 0.025 | 0.029 | 0.235 | — |
| chr5_373549_C_T | chr5:373549 | -0.035 | -0.005 | -0.232 | — |
| chr5_373566_C_A | chr5:373566 | -0.027 | -0.003 | -0.221 | — |
| chr5_373856_G_T | chr5:373856 | -0.047 | -0.016 | 0.221 | 0.0040% |
| chr5_373566_C_T | chr5:373566 | -0.042 | -0.008 | -0.209 | — |
| chr5_373760_G_A | chr5:373760 | 0.010 | 0.013 | 0.209 | 3.68% |
| chr5_373634_G_C | chr5:373634 | 0.036 | 0.026 | 0.206 | — |
| chr5_373768_C_A | chr5:373768 | -0.007 | 0.011 | 0.206 | <0.001% |
| chr5_373617_T_G | chr5:373617 | 0.022 | 0.013 | 0.203 | — |
| chr5_373715_G_A | chr5:373715 | 0.002 | 0.013 | 0.203 | <0.001% |
| chr5_373617_T_C | chr5:373617 | 0.012 | 0.008 | 0.197 | — |
| chr5_373778_C_G | chr5:373778 | 0.110 | 0.016 | 0.197 | 0.0066% |
| chr5_373631_A_G | chr5:373631 | -0.017 | -0.018 | -0.194 | — |
| chr5_373808_G_A | chr5:373808 | 0.027 | 0.023 | 0.194 | 0.0033% |
| chr5_373741_G_A | chr5:373741 | 0.010 | 0.012 | 0.191 | 0.0033% |
| chr5_373767_C_T | chr5:373767 | 0.032 | 0.011 | 0.191 | 0.0020% |
| chr5_373604_G_A | chr5:373604 | 0.039 | 0.010 | 0.185 | — |
| chr5_373635_G_C | chr5:373635 | 0.029 | 0.027 | 0.185 | — |
| chr5_373660_C_T | chr5:373660 | -0.030 | -0.010 | -0.185 | 0.0046% |
| chr5_373564_C_A | chr5:373564 | -0.007 | -0.000 | -0.182 | — |
| chr5_373635_G_T | chr5:373635 | 0.014 | 0.017 | 0.182 | — |
| chr5_373760_G_T | chr5:373760 | 0.002 | 0.010 | 0.182 | 0.0026% |
| chr5_373457_C_G | chr5:373457 | 0.072 | 0.075 | 0.179 | — |
| chr5_373353_A_T | chr5:373353 | -0.006 | 0.026 | 0.176 | — |
| chr5_373533_C_T | chr5:373533 | -0.028 | -0.011 | -0.176 | — |
| chr5_373570_C_A | chr5:373570 | -0.029 | -0.011 | -0.176 | — |
| chr5_373565_A_T | chr5:373565 | -0.040 | -0.009 | -0.174 | — |
| chr5_373638_C_A | chr5:373638 | -0.043 | -0.013 | -0.174 | — |
| chr5_373749_C_A | chr5:373749 | 0.008 | 0.011 | 0.174 | 0.0040% |
| chr5_373601_G_C | chr5:373601 | 0.057 | 0.016 | 0.171 | — |
| chr5_373753_T_G | chr5:373753 | -0.024 | -0.002 | -0.171 | <0.001% |
| chr5_373459_C_G | chr5:373459 | 0.046 | -0.000 | 0.168 | — |
| chr5_373659_G_A | chr5:373659 | 0.024 | 0.015 | 0.168 | <0.001% |
| chr5_373392_G_C | chr5:373392 | 0.024 | 0.029 | 0.165 | — |
| chr5_373568_C_G | chr5:373568 | -0.047 | -0.001 | -0.165 | — |
| chr5_373607_T_G | chr5:373607 | 0.015 | 0.020 | 0.165 | — |
| chr5_373632_C_G | chr5:373632 | -0.035 | -0.015 | -0.165 | — |
| chr5_373816_C_T | chr5:373816 | -0.037 | 0.004 | 0.165 | 0.0066% |
| chr5_373562_T_G | chr5:373562 | 0.023 | 0.007 | 0.162 | — |
| chr5_373424_G_T | chr5:373424 | -0.010 | -0.004 | -0.159 | — |
| chr5_373518_A_T | chr5:373518 | 0.036 | 0.003 | 0.159 | — |
| chr5_373616_A_C | chr5:373616 | 0.007 | 0.014 | 0.159 | — |
| chr5_373745_G_A | chr5:373745 | -0.013 | 0.012 | 0.159 | 0.0053% |
| chr5_373560_C_G | chr5:373560 | 0.036 | 0.015 | 0.156 | — |
| chr5_373759_C_T | chr5:373759 | 0.026 | 0.006 | 0.156 | <0.001% |
| chr5_373566_C_G | chr5:373566 | -0.022 | 0.001 | -0.153 | — |
| chr5_373567_T_C | chr5:373567 | -0.047 | -0.008 | -0.153 | — |
| chr5_373600_G_T | chr5:373600 | 0.027 | -0.003 | 0.153 | — |
| chr5_373646_G_T | chr5:373646 | 0.006 | 0.013 | 0.153 | — |
| chr5_373807_C_T | chr5:373807 | -0.087 | -0.006 | -0.118 | 0.0013% |
| chr5_373555_C_A | chr5:373555 | -0.024 | -0.013 | -0.150 | — |
| chr5_373616_A_G | chr5:373616 | 0.028 | 0.007 | 0.150 | — |
| chr5_373377_G_C | chr5:373377 | -0.002 | -0.004 | 0.147 | — |
| chr5_373506_A_C | chr5:373506 | -0.026 | 0.009 | -0.147 | — |
| chr5_373656_G_T | chr5:373656 | -0.082 | 0.003 | -0.065 | <0.001% |
| chr5_373564_C_T | chr5:373564 | 0.015 | 0.024 | -0.144 | <0.001% |
| chr5_373609_T_C | chr5:373609 | 0.007 | 0.010 | 0.144 | — |
| chr5_373791_C_T | chr5:373791 | 0.032 | 0.010 | 0.144 | 0.016% |
| chr5_373458_C_A | chr5:373458 | 0.028 | 0.019 | 0.141 | <0.001% |
| chr5_373561_A_T | chr5:373561 | 0.024 | 0.005 | 0.141 | — |
| chr5_373590_T_G | chr5:373590 | -0.021 | -0.016 | -0.141 | <0.001% |
| chr5_373561_A_G | chr5:373561 | 0.014 | 0.011 | 0.138 | — |
| chr5_373637_G_A | chr5:373637 | 0.024 | 0.016 | 0.138 | <0.001% |
| chr5_373385_C_G | chr5:373385 | -0.014 | -0.026 | -0.135 | — |
| chr5_373556_T_C | chr5:373556 | 0.042 | 0.021 | 0.135 | — |
| chr5_373570_C_T | chr5:373570 | -0.032 | -0.012 | -0.135 | — |
| chr5_373577_C_G | chr5:373577 | -0.008 | -0.007 | -0.135 | — |
| chr5_373600_G_A | chr5:373600 | 0.037 | -0.005 | 0.135 | — |
| chr5_373458_C_G | chr5:373458 | 0.075 | 0.045 | 0.112 | — |
| chr5_373505_C_G | chr5:373505 | 0.027 | 0.030 | 0.132 | — |
| chr5_373601_G_A | chr5:373601 | 0.018 | -0.005 | 0.132 | — |
| chr5_373602_G_T | chr5:373602 | 0.020 | -0.004 | 0.132 | — |
| chr5_373615_C_G | chr5:373615 | 0.025 | 0.020 | 0.132 | — |
| chr5_373617_T_A | chr5:373617 | 0.022 | 0.010 | 0.132 | — |
| chr5_373634_G_A | chr5:373634 | 0.007 | 0.007 | 0.132 | — |
| chr5_373635_G_A | chr5:373635 | -0.007 | 0.015 | 0.132 | — |
| chr5_373391_G_T | chr5:373391 | 0.000 | -0.003 | -0.129 | — |
| chr5_373526_G_A | chr5:373526 | -0.007 | -0.005 | -0.129 | 0.0013% |
| chr5_373567_T_A | chr5:373567 | -0.022 | -0.008 | -0.129 | — |
| chr5_373645_G_C | chr5:373645 | -0.003 | 0.010 | 0.129 | — |
| chr5_373526_G_T | chr5:373526 | -0.009 | -0.010 | -0.126 | — |
| chr5_373550_C_T | chr5:373550 | -0.018 | -0.007 | -0.126 | 0.333% |
| chr5_373599_G_C | chr5:373599 | 0.007 | -0.003 | 0.126 | 0.081% |
| chr5_373643_G_C | chr5:373643 | -0.004 | 0.006 | 0.126 | — |
| chr5_373499_A_T | chr5:373499 | 0.010 | 0.009 | 0.124 | — |
| chr5_373568_C_A | chr5:373568 | -0.037 | -0.007 | -0.124 | — |
| chr5_373569_A_T | chr5:373569 | -0.032 | -0.017 | -0.124 | — |
| chr5_373576_G_T | chr5:373576 | -0.006 | 0.013 | -0.124 | — |
| chr5_373603_G_A | chr5:373603 | 0.043 | 0.009 | 0.124 | — |
| chr5_373643_G_A | chr5:373643 | 0.008 | 0.009 | 0.124 | — |
| chr5_373897_G_T | chr5:373897 | 0.019 | 0.017 | 0.124 | <0.001% |
| chr5_373623_A_G | chr5:373623 | -0.015 | -0.011 | -0.121 | — |
| chr5_373493_A_C | chr5:373493 | 0.010 | 0.000 | -0.118 | — |
| chr5_373499_A_C | chr5:373499 | 0.009 | 0.011 | 0.118 | — |
| chr5_373562_T_C | chr5:373562 | -0.016 | -0.006 | 0.118 | — |
| chr5_373637_G_C | chr5:373637 | -0.002 | 0.006 | 0.118 | — |
| chr5_373640_G_C | chr5:373640 | 0.001 | 0.010 | 0.118 | — |
| chr5_373646_G_A | chr5:373646 | -0.001 | 0.011 | 0.118 | — |
| chr5_373788_T_G | chr5:373788 | 0.017 | 0.002 | -0.118 | <0.001% |
| chr5_373513_T_C | chr5:373513 | -0.022 | -0.010 | -0.115 | — |
| chr5_373550_C_A | chr5:373550 | -0.029 | -0.010 | -0.115 | — |
| chr5_373571_C_A | chr5:373571 | 0.003 | -0.003 | -0.115 | — |
| chr5_373592_G_A | chr5:373592 | 0.022 | 0.023 | 0.115 | — |
| chr5_373607_T_A | chr5:373607 | 0.009 | 0.015 | 0.115 | — |
| chr5_373609_T_A | chr5:373609 | 0.017 | 0.006 | 0.115 | — |
| chr5_373615_C_A | chr5:373615 | 0.031 | 0.017 | 0.115 | — |
| chr5_373622_G_A | chr5:373622 | -0.022 | -0.014 | -0.115 | — |
| chr5_373772_C_A | chr5:373772 | -0.043 | -0.000 | 0.115 | <0.001% |
| chr5_373882_C_T | chr5:373882 | 0.036 | 0.042 | 0.115 | 0.0027% |
| chr5_373480_C_T | chr5:373480 | 0.006 | -0.001 | -0.112 | — |
| chr5_373586_T_G | chr5:373586 | 0.007 | -0.013 | -0.112 | — |
| chr5_373616_A_T | chr5:373616 | 0.031 | 0.015 | 0.112 | — |
| chr5_373507_C_T | chr5:373507 | -0.001 | 0.004 | -0.109 | — |
| chr5_373516_C_A | chr5:373516 | -0.014 | -0.009 | -0.109 | — |
| chr5_373606_C_G | chr5:373606 | 0.017 | 0.011 | 0.109 | <0.001% |
| chr5_373618_C_G | chr5:373618 | 0.017 | 0.001 | 0.109 | — |
| chr5_373850_G_A | chr5:373850 | 0.017 | 0.018 | 0.109 | 0.021% |
| chr5_373647_T_C | chr5:373647 | -0.061 | -0.004 | -0.097 | — |
| chr5_373348_T_A | chr5:373348 | 0.001 | 0.002 | 0.106 | — |
| chr5_373393_C_G | chr5:373393 | -0.027 | -0.020 | -0.106 | — |
| chr5_373460_C_G | chr5:373460 | 0.039 | -0.006 | 0.106 | — |
| chr5_373500_T_C | chr5:373500 | 0.012 | 0.010 | 0.106 | <0.001% |
| chr5_373546_G_T | chr5:373546 | -0.026 | -0.007 | -0.106 | — |
| chr5_373609_T_G | chr5:373609 | 0.010 | 0.012 | 0.106 | — |
| chr5_373611_T_G | chr5:373611 | 0.009 | 0.004 | 0.106 | — |
| chr5_373459_C_A | chr5:373459 | 0.024 | -0.005 | 0.103 | — |
| chr5_373461_T_G | chr5:373461 | 0.035 | 0.003 | 0.103 | — |
| chr5_373504_C_G | chr5:373504 | 0.020 | 0.006 | 0.103 | — |
| chr5_373552_T_C | chr5:373552 | 0.036 | 0.015 | 0.103 | — |
| chr5_373555_C_T | chr5:373555 | -0.004 | -0.005 | -0.103 | — |
| chr5_373561_A_C | chr5:373561 | 0.015 | 0.007 | 0.103 | — |
| chr5_373579_A_T | chr5:373579 | -0.029 | 0.001 | -0.103 | — |
| chr5_373581_T_G | chr5:373581 | 0.003 | 0.003 | -0.103 | — |
| chr5_373588_G_A | chr5:373588 | 0.017 | 0.014 | 0.103 | — |
| chr5_373611_T_C | chr5:373611 | -0.012 | 0.006 | 0.103 | — |
| chr5_373626_A_C | chr5:373626 | 0.017 | 0.011 | 0.103 | — |
| chr5_373627_G_C | chr5:373627 | 0.006 | 0.007 | 0.103 | — |
| chr5_373647_T_A | chr5:373647 | -0.058 | -0.003 | -0.100 | — |
| chr5_373353_A_C | chr5:373353 | -0.005 | -0.001 | 0.100 | — |
Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.