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TCEA3
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near TCEA3
chr1:23,280,908..23,524,748, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr1_23456462_A_T | chr1:23456462 | 0.261 | 0.069 | 0.276 | — |
| chr1_23456500_T_G | chr1:23456500 | 0.121 | 0.053 | 0.341 | — |
| chr1_23456462_A_C | chr1:23456462 | 0.188 | 0.079 | 0.259 | — |
| chr1_23478851_C_G | chr1:23478851 | -0.174 | -0.091 | -0.059 | — |
| chr1_23456504_T_C | chr1:23456504 | 0.166 | 0.142 | 0.241 | — |
| chr1_23456506_T_A | chr1:23456506 | 0.130 | 0.013 | 0.265 | — |
| chr1_23456455_T_G | chr1:23456455 | -0.145 | -0.058 | -0.135 | — |
| chr1_23456457_A_C | chr1:23456457 | -0.100 | -0.043 | -0.253 | — |
| chr1_23456471_G_C | chr1:23456471 | -0.100 | -0.048 | -0.247 | — |
| chr1_23456501_G_C | chr1:23456501 | 0.045 | 0.084 | 0.235 | — |
| chr1_23456486_G_A | chr1:23456486 | -0.090 | -0.028 | -0.229 | — |
| chr1_23456486_G_T | chr1:23456486 | -0.128 | -0.061 | -0.218 | 0.0013% |
| chr1_23456460_C_T | chr1:23456460 | -0.090 | -0.025 | -0.224 | — |
| chr1_23456470_T_A | chr1:23456470 | -0.125 | -0.030 | -0.141 | — |
| chr1_23456459_T_G | chr1:23456459 | -0.123 | -0.036 | -0.124 | — |
| chr1_23456466_T_A | chr1:23456466 | -0.123 | -0.058 | -0.135 | — |
| chr1_23478877_T_C | chr1:23478877 | 0.122 | 0.061 | 0.129 | — |
| chr1_23456516_C_A | chr1:23456516 | -0.057 | -0.025 | -0.212 | — |
| chr1_23456455_T_A | chr1:23456455 | -0.116 | -0.043 | -0.165 | — |
| chr1_23456456_G_T | chr1:23456456 | -0.116 | -0.003 | -0.124 | — |
| chr1_23456498_T_C | chr1:23456498 | 0.092 | 0.089 | 0.206 | — |
| chr1_23456456_G_C | chr1:23456456 | -0.115 | -0.015 | -0.165 | — |
| chr1_23456459_T_C | chr1:23456459 | -0.115 | -0.056 | -0.112 | — |
| chr1_23456462_A_G | chr1:23456462 | 0.115 | -0.023 | 0.129 | — |
| chr1_23478877_T_A | chr1:23478877 | 0.115 | 0.145 | 0.182 | — |
| chr1_23456454_G_T | chr1:23456454 | -0.113 | -0.015 | -0.147 | — |
| chr1_23456456_G_A | chr1:23456456 | -0.113 | -0.023 | -0.182 | — |
| chr1_23456457_A_T | chr1:23456457 | -0.113 | -0.023 | -0.182 | — |
| chr1_23456470_T_C | chr1:23456470 | -0.113 | -0.038 | -0.118 | — |
| chr1_23456491_G_T | chr1:23456491 | -0.052 | -0.010 | -0.200 | — |
| chr1_23456514_G_T | chr1:23456514 | -0.063 | -0.033 | -0.200 | — |
| chr1_23456516_C_T | chr1:23456516 | -0.040 | -0.015 | -0.200 | — |
| chr1_23456441_C_A | chr1:23456441 | 0.111 | 0.066 | 0.106 | — |
| chr1_23456460_C_G | chr1:23456460 | -0.103 | -0.025 | -0.194 | — |
| chr1_23456471_G_A | chr1:23456471 | -0.060 | -0.020 | -0.194 | — |
| chr1_23456471_G_T | chr1:23456471 | -0.065 | -0.015 | -0.194 | — |
| chr1_23456484_G_C | chr1:23456484 | -0.058 | -0.028 | -0.194 | — |
| chr1_23456485_T_G | chr1:23456485 | -0.090 | -0.048 | -0.194 | — |
| chr1_23456486_G_C | chr1:23456486 | -0.110 | -0.058 | -0.182 | — |
| chr1_23456497_G_C | chr1:23456497 | 0.032 | 0.023 | 0.194 | — |
| chr1_23456515_G_A | chr1:23456515 | -0.018 | -0.003 | -0.194 | — |
| chr1_23456515_G_T | chr1:23456515 | -0.018 | -0.010 | -0.194 | — |
| chr1_23478872_C_G | chr1:23478872 | -0.107 | -0.157 | -0.159 | — |
| chr1_23456488_C_A | chr1:23456488 | -0.105 | -0.030 | -0.188 | — |
| chr1_23456453_A_G | chr1:23456453 | 0.105 | 0.018 | 0.088 | — |
| chr1_23456459_T_A | chr1:23456459 | -0.103 | -0.023 | -0.124 | — |
| chr1_23456484_G_A | chr1:23456484 | -0.055 | -0.018 | -0.182 | 0.0013% |
| chr1_23456501_G_T | chr1:23456501 | 0.062 | 0.069 | 0.182 | — |
| chr1_23456514_G_C | chr1:23456514 | -0.058 | -0.043 | -0.182 | — |
| chr1_23456488_C_T | chr1:23456488 | -0.101 | -0.030 | -0.153 | — |
| chr1_23456483_T_G | chr1:23456483 | -0.028 | -0.030 | -0.176 | — |
| chr1_23456491_G_A | chr1:23456491 | -0.035 | 0.000 | -0.176 | <0.001% |
| chr1_23456446_T_G | chr1:23456446 | 0.097 | 0.025 | 0.035 | — |
| chr1_23456488_C_G | chr1:23456488 | -0.097 | -0.046 | -0.159 | — |
| chr1_23456509_C_T | chr1:23456509 | -0.010 | 0.005 | -0.171 | — |
| chr1_23456458_G_A | chr1:23456458 | -0.095 | -0.005 | -0.094 | — |
| chr1_23456466_T_C | chr1:23456466 | -0.095 | -0.122 | 0.018 | — |
| chr1_23456472_G_C | chr1:23456472 | -0.095 | -0.010 | -0.082 | — |
| chr1_23456483_T_C | chr1:23456483 | 0.048 | 0.025 | 0.165 | — |
| chr1_23456508_G_A | chr1:23456508 | -0.078 | 0.030 | -0.165 | — |
| chr1_23456461_A_G | chr1:23456461 | -0.092 | -0.043 | -0.088 | — |
| chr1_23456470_T_G | chr1:23456470 | -0.092 | -0.010 | -0.159 | — |
| chr1_23478879_G_T | chr1:23478879 | 0.091 | 0.071 | 0.076 | — |
| chr1_23456464_G_A | chr1:23456464 | -0.058 | -0.018 | -0.159 | — |
| chr1_23456467_A_C | chr1:23456467 | -0.087 | -0.020 | -0.159 | — |
| chr1_23456473_C_G | chr1:23456473 | -0.090 | -0.028 | -0.129 | — |
| chr1_23456484_G_T | chr1:23456484 | -0.052 | -0.025 | -0.159 | — |
| chr1_23456502_A_T | chr1:23456502 | 0.078 | 0.051 | 0.159 | — |
| chr1_23456508_G_T | chr1:23456508 | -0.013 | -0.005 | -0.159 | — |
| chr1_23478881_C_T | chr1:23478881 | -0.052 | -0.129 | -0.159 | — |
| chr1_23478878_G_C | chr1:23478878 | 0.089 | 0.036 | 0.082 | — |
| chr1_23456469_G_C | chr1:23456469 | -0.088 | 0.038 | -0.100 | — |
| chr1_23478837_T_G | chr1:23478837 | -0.088 | -0.063 | -0.047 | — |
| chr1_23456455_T_C | chr1:23456455 | -0.087 | -0.025 | -0.047 | — |
| chr1_23456466_T_G | chr1:23456466 | -0.087 | -0.046 | -0.012 | — |
| chr1_23456472_G_A | chr1:23456472 | -0.045 | -0.005 | -0.153 | — |
| chr1_23456480_G_T | chr1:23456480 | -0.068 | -0.036 | -0.147 | — |
| chr1_23456482_G_T | chr1:23456482 | -0.083 | 0.005 | -0.094 | — |
| chr1_23456489_A_T | chr1:23456489 | -0.028 | 0.018 | -0.147 | — |
| chr1_23456469_G_A | chr1:23456469 | -0.082 | 0.008 | -0.135 | — |
| chr1_23456441_C_G | chr1:23456441 | 0.080 | 0.030 | 0.076 | — |
| chr1_23456457_A_G | chr1:23456457 | -0.080 | 0.010 | -0.124 | — |
| chr1_23456502_A_C | chr1:23456502 | 0.025 | 0.025 | 0.141 | — |
| chr1_23456514_G_A | chr1:23456514 | -0.032 | -0.020 | -0.141 | — |
| chr1_23456515_G_C | chr1:23456515 | -0.007 | -0.013 | -0.141 | — |
| chr1_23456516_C_G | chr1:23456516 | -0.035 | -0.020 | -0.141 | — |
| chr1_23478872_C_T | chr1:23478872 | -0.069 | -0.091 | -0.141 | <0.001% |
| chr1_23456473_C_A | chr1:23456473 | -0.075 | -0.010 | -0.135 | — |
| chr1_23456487_C_A | chr1:23456487 | -0.077 | -0.020 | -0.135 | — |
| chr1_23456490_G_T | chr1:23456490 | -0.027 | 0.018 | -0.135 | — |
| chr1_23456502_A_G | chr1:23456502 | 0.025 | 0.010 | 0.135 | — |
| chr1_23456510_C_A | chr1:23456510 | -0.017 | 0.000 | -0.135 | — |
| chr1_23456444_C_G | chr1:23456444 | -0.075 | -0.005 | -0.012 | — |
| chr1_23456554_C_A | chr1:23456554 | 0.075 | 0.030 | 0.018 | — |
| chr1_23456460_C_A | chr1:23456460 | -0.072 | -0.003 | -0.129 | — |
| chr1_23456467_A_T | chr1:23456467 | -0.073 | -0.030 | -0.124 | — |
| chr1_23456509_C_A | chr1:23456509 | 0.010 | 0.010 | -0.129 | — |
| chr1_23456512_C_A | chr1:23456512 | -0.025 | -0.013 | -0.129 | — |
| chr1_23456513_T_A | chr1:23456513 | 0.032 | 0.005 | 0.129 | — |
| chr1_23478839_T_G | chr1:23478839 | 0.043 | 0.076 | 0.129 | — |
| chr1_23478863_G_T | chr1:23478863 | -0.063 | -0.132 | -0.129 | — |
| chr1_23456469_G_T | chr1:23456469 | -0.072 | -0.003 | -0.082 | — |
| chr1_23478873_A_G | chr1:23478873 | -0.071 | -0.046 | -0.041 | — |
| chr1_23456468_C_T | chr1:23456468 | -0.032 | 0.038 | -0.124 | — |
| chr1_23456473_C_T | chr1:23456473 | -0.022 | 0.000 | -0.124 | — |
| chr1_23456487_C_T | chr1:23456487 | -0.050 | -0.018 | -0.124 | — |
| chr1_23456491_G_C | chr1:23456491 | -0.020 | -0.008 | -0.124 | — |
| chr1_23456492_C_A | chr1:23456492 | 0.002 | 0.005 | -0.124 | — |
| chr1_23456492_C_T | chr1:23456492 | -0.003 | 0.018 | -0.124 | — |
| chr1_23456499_T_A | chr1:23456499 | 0.070 | 0.058 | 0.094 | — |
| chr1_23478842_A_C | chr1:23478842 | 0.069 | 0.074 | 0.124 | — |
| chr1_23478872_C_A | chr1:23478872 | -0.069 | -0.086 | -0.118 | — |
| chr1_23456500_T_A | chr1:23456500 | 0.068 | 0.033 | 0.082 | — |
| chr1_23456450_T_G | chr1:23456450 | 0.018 | 0.051 | 0.118 | <0.001% |
| chr1_23456461_A_T | chr1:23456461 | -0.052 | -0.020 | -0.118 | — |
| chr1_23456474_A_C | chr1:23456474 | -0.067 | -0.025 | -0.012 | — |
| chr1_23456474_A_T | chr1:23456474 | -0.067 | -0.013 | -0.059 | — |
| chr1_23456481_G_A | chr1:23456481 | -0.047 | -0.036 | -0.118 | — |
| chr1_23456493_C_T | chr1:23456493 | -0.007 | 0.018 | -0.118 | — |
| chr1_23456499_T_G | chr1:23456499 | 0.028 | 0.030 | 0.118 | — |
| chr1_23478842_A_G | chr1:23478842 | 0.002 | 0.033 | 0.118 | — |
| chr1_23478877_T_G | chr1:23478877 | 0.064 | 0.033 | 0.118 | 0.0020% |
| chr1_23478878_G_T | chr1:23478878 | 0.066 | 0.013 | 0.006 | — |
| chr1_23478851_C_A | chr1:23478851 | -0.065 | -0.046 | -0.059 | — |
| chr1_23456454_G_C | chr1:23456454 | -0.065 | -0.003 | -0.076 | — |
| chr1_23478882_A_C | chr1:23478882 | 0.064 | 0.091 | 0.100 | — |
| chr1_23456451_G_A | chr1:23456451 | 0.013 | -0.005 | -0.112 | — |
| chr1_23456519_T_C | chr1:23456519 | 0.017 | 0.028 | 0.112 | 0.0013% |
| chr1_23456443_G_T | chr1:23456443 | -0.062 | -0.028 | -0.076 | — |
| chr1_23456444_C_A | chr1:23456444 | -0.062 | -0.013 | -0.029 | — |
| chr1_23478851_C_T | chr1:23478851 | -0.061 | -0.013 | -0.071 | — |
| chr1_23478868_A_G | chr1:23478868 | -0.061 | -0.053 | -0.018 | — |
| chr1_23456464_G_T | chr1:23456464 | -0.043 | -0.005 | -0.106 | — |
| chr1_23456474_A_G | chr1:23456474 | -0.060 | -0.025 | -0.059 | — |
| chr1_23456476_G_A | chr1:23456476 | -0.027 | -0.003 | -0.106 | <0.001% |
| chr1_23456496_G_C | chr1:23456496 | 0.028 | 0.018 | 0.106 | — |
| chr1_23456498_T_A | chr1:23456498 | 0.017 | 0.015 | 0.106 | <0.001% |
| chr1_23456510_C_G | chr1:23456510 | -0.028 | -0.010 | -0.106 | — |
| chr1_23456527_G_T | chr1:23456527 | -0.022 | -0.008 | -0.106 | — |
| chr1_23478839_T_C | chr1:23478839 | 0.001 | 0.023 | 0.106 | — |
| chr1_23478857_C_A | chr1:23478857 | -0.059 | 0.000 | -0.041 | — |
| chr1_23456445_G_C | chr1:23456445 | -0.058 | -0.018 | -0.012 | — |
| chr1_23456445_G_T | chr1:23456445 | -0.058 | -0.010 | -0.029 | — |
| chr1_23456447_A_G | chr1:23456447 | 0.037 | 0.010 | 0.100 | — |
| chr1_23456490_G_A | chr1:23456490 | 0.002 | 0.005 | -0.100 | — |
| chr1_23478875_G_T | chr1:23478875 | 0.057 | -0.025 | -0.029 | — |
| chr1_23478876_A_C | chr1:23478876 | 0.045 | 0.048 | 0.100 | — |
| chr1_23478868_A_C | chr1:23478868 | -0.056 | -0.074 | -0.035 | — |
| chr1_23478878_G_A | chr1:23478878 | 0.055 | 0.033 | 0.024 | — |
| chr1_23478881_C_A | chr1:23478881 | 0.054 | -0.066 | -0.012 | — |
| chr1_23456439_T_G | chr1:23456439 | -0.053 | -0.030 | 0.000 | — |
| chr1_23456448_A_T | chr1:23456448 | -0.018 | -0.010 | -0.094 | — |
| chr1_23456465_G_A | chr1:23456465 | -0.025 | -0.015 | -0.094 | <0.001% |
| chr1_23456477_A_C | chr1:23456477 | 0.005 | 0.000 | 0.094 | — |
| chr1_23456485_T_A | chr1:23456485 | -0.038 | -0.025 | -0.094 | — |
| chr1_23456487_C_G | chr1:23456487 | -0.053 | -0.018 | 0.000 | — |
| chr1_23456492_C_G | chr1:23456492 | -0.002 | 0.000 | -0.094 | — |
| chr1_23456505_C_G | chr1:23456505 | 0.053 | 0.041 | 0.094 | — |
| chr1_23456510_C_T | chr1:23456510 | -0.003 | 0.005 | -0.094 | — |
| chr1_23456511_T_A | chr1:23456511 | -0.012 | -0.003 | -0.094 | — |
| chr1_23456550_A_T | chr1:23456550 | 0.053 | 0.003 | 0.029 | — |
| chr1_23478852_T_G | chr1:23478852 | -0.015 | 0.051 | 0.094 | — |
| chr1_23478862_A_C | chr1:23478862 | -0.014 | -0.036 | 0.094 | — |
| chr1_23478870_A_G | chr1:23478870 | 0.045 | 0.033 | 0.094 | — |
| chr1_23478884_A_C | chr1:23478884 | -0.053 | -0.041 | -0.029 | — |
| chr1_23478864_G_C | chr1:23478864 | 0.052 | 0.015 | 0.000 | — |
| chr1_23478831_T_G | chr1:23478831 | -0.051 | -0.033 | -0.024 | — |
| chr1_23478866_A_C | chr1:23478866 | -0.051 | -0.086 | -0.041 | — |
| chr1_23478861_G_T | chr1:23478861 | 0.051 | -0.030 | -0.047 | — |
| chr1_23478882_A_T | chr1:23478882 | 0.051 | 0.043 | 0.024 | — |
| chr1_23478887_A_G | chr1:23478887 | 0.033 | -0.155 | 0.088 | — |
| chr1_23456539_C_A | chr1:23456539 | -0.037 | -0.008 | -0.088 | — |
| chr1_23456546_G_T | chr1:23456546 | -0.037 | -0.015 | -0.088 | — |
| chr1_23478849_A_C | chr1:23478849 | 0.022 | 0.018 | 0.088 | — |
| chr1_23478862_A_G | chr1:23478862 | -0.022 | 0.025 | -0.088 | — |
| chr1_23478859_G_T | chr1:23478859 | -0.050 | -0.020 | -0.047 | — |
| chr1_23456451_G_T | chr1:23456451 | -0.048 | -0.018 | -0.065 | — |
| chr1_23456507_T_A | chr1:23456507 | 0.048 | 0.015 | 0.006 | — |
| chr1_23478842_A_T | chr1:23478842 | 0.048 | 0.076 | 0.076 | — |
| chr1_23456436_C_A | chr1:23456436 | 0.015 | 0.030 | -0.082 | — |
| chr1_23456436_C_G | chr1:23456436 | 0.022 | 0.028 | -0.082 | — |
| chr1_23456438_A_C | chr1:23456438 | 0.047 | 0.020 | -0.018 | — |
| chr1_23456443_G_A | chr1:23456443 | -0.042 | 0.000 | -0.082 | — |
| chr1_23456449_A_C | chr1:23456449 | 0.047 | 0.013 | 0.029 | — |
| chr1_23456464_G_C | chr1:23456464 | -0.030 | -0.023 | -0.082 | — |
| chr1_23456481_G_T | chr1:23456481 | -0.028 | -0.025 | -0.082 | — |
| chr1_23456489_A_G | chr1:23456489 | -0.040 | -0.018 | -0.082 | — |
| chr1_23456505_C_A | chr1:23456505 | 0.047 | 0.051 | 0.018 | — |
| chr1_23456512_C_T | chr1:23456512 | -0.015 | -0.008 | -0.082 | — |
| chr1_23456520_A_T | chr1:23456520 | -0.012 | -0.025 | -0.082 | — |
| chr1_23456541_A_C | chr1:23456541 | 0.017 | 0.000 | 0.082 | — |
| chr1_23456544_C_T | chr1:23456544 | -0.033 | -0.020 | -0.082 | — |
| chr1_23456551_C_A | chr1:23456551 | -0.002 | 0.010 | -0.082 | — |
| chr1_23456569_G_T | chr1:23456569 | -0.032 | -0.010 | -0.082 | — |
| chr1_23478839_T_A | chr1:23478839 | 0.016 | 0.043 | 0.082 | — |
| chr1_23478854_A_T | chr1:23478854 | -0.031 | -0.028 | -0.082 | — |
| chr1_23478885_G_T | chr1:23478885 | -0.032 | -0.003 | -0.082 | — |
| chr1_23456437_A_C | chr1:23456437 | -0.045 | -0.013 | -0.018 | — |
| chr1_23456444_C_T | chr1:23456444 | -0.045 | -0.003 | 0.018 | 0.022% |
| chr1_23478860_G_C | chr1:23478860 | 0.045 | -0.003 | 0.065 | — |
Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.