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TCN2
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near TCN2
chr22:30,507,082..30,727,271, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr22_30562653_G_T | chr22:30562653 | 1.000 | 1.000 | 1.000 | — |
| chr22_30562668_G_C | chr22:30562668 | 0.996 | 0.898 | 1.000 | — |
| chr22_30562644_G_C | chr22:30562644 | 0.982 | 0.594 | 0.624 | — |
| chr22_30562653_G_C | chr22:30562653 | 0.935 | 0.904 | 1.000 | 0.0072% |
| chr22_30562618_A_T | chr22:30562618 | -0.769 | -1.000 | -1.000 | — |
| chr22_30562618_A_C | chr22:30562618 | -0.781 | -1.000 | -1.000 | — |
| chr22_30562620_T_C | chr22:30562620 | -0.790 | -0.964 | -1.000 | — |
| chr22_30562618_A_G | chr22:30562618 | -0.773 | -1.000 | -1.000 | — |
| chr22_30562610_T_A | chr22:30562610 | 0.871 | 0.878 | 0.941 | — |
| chr22_30562741_G_A | chr22:30562741 | 0.870 | 1.000 | 1.000 | — |
| chr22_30562620_T_A | chr22:30562620 | -0.761 | -0.919 | -1.000 | — |
| chr22_30562616_T_A | chr22:30562616 | -0.705 | -0.864 | -1.000 | — |
| chr22_30562622_A_T | chr22:30562622 | -0.677 | -0.807 | -1.000 | — |
| chr22_30562616_T_G | chr22:30562616 | -0.712 | -0.869 | -1.000 | — |
| chr22_30562740_T_A | chr22:30562740 | 0.823 | 1.000 | 0.876 | — |
| chr22_30562663_T_C | chr22:30562663 | 0.822 | 0.944 | 1.000 | — |
| chr22_30562610_T_C | chr22:30562610 | -0.792 | -0.976 | -1.000 | — |
| chr22_30562620_T_G | chr22:30562620 | -0.718 | -0.858 | -1.000 | — |
| chr22_30562622_A_C | chr22:30562622 | -0.637 | -0.722 | -1.000 | — |
| chr22_30562606_A_C | chr22:30562606 | 0.766 | 0.937 | 1.000 | — |
| chr22_30562622_A_G | chr22:30562622 | -0.641 | -0.763 | -1.000 | — |
| chr22_30562671_T_C | chr22:30562671 | 0.747 | 0.926 | 0.694 | — |
| chr22_30562616_T_C | chr22:30562616 | -0.661 | -0.797 | -1.000 | — |
| chr22_30562621_C_T | chr22:30562621 | -0.581 | -0.693 | -1.000 | — |
| chr22_30562592_C_A | chr22:30562592 | 0.712 | 0.812 | 0.800 | 0.0013% |
| chr22_30562617_G_A | chr22:30562617 | -0.562 | -0.697 | -1.000 | 0.0046% |
| chr22_30562621_C_G | chr22:30562621 | -0.568 | -0.671 | -1.000 | — |
| chr22_30562632_T_C | chr22:30562632 | -0.612 | -0.756 | -1.000 | — |
| chr22_30562634_C_A | chr22:30562634 | 0.700 | 0.787 | 1.000 | — |
| chr22_30562617_G_C | chr22:30562617 | -0.564 | -0.695 | -1.000 | — |
| chr22_30562600_C_G | chr22:30562600 | 0.693 | 0.701 | 0.853 | — |
| chr22_30562664_G_C | chr22:30562664 | 0.641 | 0.685 | 0.588 | — |
| chr22_30562615_G_T | chr22:30562615 | -0.554 | -0.660 | -1.000 | — |
| chr22_30562617_G_T | chr22:30562617 | -0.521 | -0.621 | -1.000 | — |
| chr22_30562604_C_T | chr22:30562604 | -0.554 | -0.615 | -1.000 | — |
| chr22_30562634_C_G | chr22:30562634 | 0.600 | 0.680 | 0.835 | — |
| chr22_30562677_T_A | chr22:30562677 | -0.561 | -0.690 | -1.000 | — |
| chr22_30562677_T_G | chr22:30562677 | -0.515 | -0.648 | -0.976 | — |
| chr22_30562659_G_T | chr22:30562659 | 0.550 | 0.607 | 0.606 | — |
| chr22_30562635_C_G | chr22:30562635 | 0.546 | 0.650 | 0.747 | — |
| chr22_30562671_T_G | chr22:30562671 | 0.531 | 0.551 | 0.594 | — |
| chr22_30562677_T_C | chr22:30562677 | -0.509 | -0.624 | -0.929 | — |
| chr22_30562590_T_C | chr22:30562590 | 0.460 | 0.576 | 0.924 | 0.0020% |
| chr22_30562645_C_T | chr22:30562645 | -0.396 | -0.574 | -0.918 | — |
| chr22_30562661_G_A | chr22:30562661 | 0.519 | 0.673 | 0.712 | — |
| chr22_30562619_C_A | chr22:30562619 | -0.474 | -0.581 | -0.906 | — |
| chr22_30562619_C_T | chr22:30562619 | -0.469 | -0.584 | -0.882 | — |
| chr22_30562667_T_A | chr22:30562667 | 0.494 | 0.632 | 0.671 | — |
| chr22_30562737_A_T | chr22:30562737 | 0.472 | 0.566 | 0.871 | — |
| chr22_30562596_G_T | chr22:30562596 | -0.492 | -0.581 | -0.835 | — |
| chr22_30562691_G_A | chr22:30562691 | 0.492 | 0.708 | 0.612 | — |
| chr22_30562601_A_T | chr22:30562601 | 0.488 | 0.457 | 0.688 | — |
| chr22_30562621_C_A | chr22:30562621 | -0.418 | -0.449 | -0.859 | — |
| chr22_30562596_G_C | chr22:30562596 | -0.483 | -0.546 | -0.765 | — |
| chr22_30562623_T_A | chr22:30562623 | -0.480 | -0.541 | -0.829 | — |
| chr22_30562588_C_G | chr22:30562588 | -0.478 | -0.591 | -0.806 | — |
| chr22_30562633_C_G | chr22:30562633 | 0.471 | 0.563 | 0.753 | — |
| chr22_30562674_C_A | chr22:30562674 | 0.459 | 0.495 | 0.559 | — |
| chr22_30562668_G_A | chr22:30562668 | 0.459 | 0.523 | 0.747 | — |
| chr22_30562714_C_A | chr22:30562714 | 0.454 | 0.688 | 0.518 | — |
| chr22_30635347_C_A | chr22:30635347 | -0.439 | -0.070 | -0.800 | — |
| chr22_30562684_C_G | chr22:30562684 | 0.452 | 0.589 | 0.453 | — |
| chr22_30562630_G_C | chr22:30562630 | 0.432 | 0.640 | 0.524 | — |
| chr22_30562682_C_A | chr22:30562682 | -0.311 | -0.509 | -0.759 | — |
| chr22_30562656_T_G | chr22:30562656 | -0.396 | -0.463 | -0.753 | — |
| chr22_30562591_G_C | chr22:30562591 | 0.413 | 0.429 | 0.535 | — |
| chr22_30562589_A_C | chr22:30562589 | 0.411 | 0.487 | 0.712 | — |
| chr22_30562643_G_C | chr22:30562643 | -0.362 | -0.431 | -0.706 | — |
| chr22_30562611_A_G | chr22:30562611 | 0.398 | 0.421 | 0.612 | — |
| chr22_30562686_G_T | chr22:30562686 | -0.278 | -0.414 | -0.700 | — |
| chr22_30562735_G_C | chr22:30562735 | 0.394 | 0.404 | 0.594 | — |
| chr22_30562615_G_C | chr22:30562615 | -0.372 | -0.444 | -0.659 | <0.001% |
| chr22_30562603_G_C | chr22:30562603 | 0.368 | 0.434 | 0.453 | — |
| chr22_30562648_C_G | chr22:30562648 | 0.331 | 0.429 | 0.635 | — |
| chr22_30562687_G_A | chr22:30562687 | -0.290 | -0.429 | -0.632 | — |
| chr22_30562686_G_A | chr22:30562686 | -0.292 | -0.409 | -0.626 | — |
| chr22_30562610_T_G | chr22:30562610 | 0.354 | 0.409 | 0.400 | — |
| chr22_30562639_G_A | chr22:30562639 | -0.354 | -0.429 | -0.576 | — |
| chr22_30562667_T_G | chr22:30562667 | -0.326 | -0.424 | -0.618 | — |
| chr22_30562683_T_G | chr22:30562683 | 0.347 | 0.391 | 0.418 | — |
| chr22_30562623_T_G | chr22:30562623 | -0.346 | -0.358 | -0.529 | — |
| chr22_30562664_G_T | chr22:30562664 | 0.287 | 0.391 | 0.606 | <0.001% |
| chr22_30562647_C_G | chr22:30562647 | 0.341 | 0.343 | 0.594 | — |
| chr22_30562687_G_T | chr22:30562687 | -0.266 | -0.381 | -0.600 | — |
| chr22_30562636_C_G | chr22:30562636 | 0.337 | 0.317 | 0.447 | — |
| chr22_30562598_T_G | chr22:30562598 | 0.229 | 0.259 | 0.594 | — |
| chr22_30562680_C_T | chr22:30562680 | -0.296 | -0.434 | -0.591 | — |
| chr22_30562660_T_G | chr22:30562660 | -0.328 | -0.396 | -0.453 | — |
| chr22_30562602_G_C | chr22:30562602 | 0.326 | 0.503 | 0.418 | — |
| chr22_30562634_C_T | chr22:30562634 | 0.322 | 0.368 | 0.429 | — |
| chr22_30562654_A_G | chr22:30562654 | 0.321 | 0.170 | 0.253 | — |
| chr22_30562751_G_A | chr22:30562751 | 0.316 | 0.411 | 0.338 | — |
| chr22_30562684_C_A | chr22:30562684 | 0.314 | 0.404 | 0.247 | — |
| chr22_30562646_A_G | chr22:30562646 | 0.314 | 0.289 | 0.553 | — |
| chr22_30562611_A_C | chr22:30562611 | 0.313 | 0.327 | 0.459 | — |
| chr22_30562682_C_T | chr22:30562682 | 0.313 | 0.393 | 0.147 | — |
| chr22_30562687_G_C | chr22:30562687 | -0.251 | -0.376 | -0.541 | — |
| chr22_30562675_C_T | chr22:30562675 | 0.306 | 0.419 | 0.465 | — |
| chr22_30562686_G_C | chr22:30562686 | -0.206 | -0.317 | -0.538 | — |
| chr22_30562684_C_T | chr22:30562684 | 0.304 | 0.383 | 0.253 | — |
| chr22_30562614_A_T | chr22:30562614 | -0.259 | -0.343 | -0.535 | — |
| chr22_30562688_G_A | chr22:30562688 | -0.184 | -0.302 | -0.529 | — |
| chr22_30562590_T_G | chr22:30562590 | 0.277 | 0.282 | 0.524 | — |
| chr22_30562688_G_T | chr22:30562688 | 0.296 | 0.415 | 0.112 | — |
| chr22_30562738_C_G | chr22:30562738 | -0.291 | -0.409 | -0.456 | — |
| chr22_30562673_C_T | chr22:30562673 | 0.288 | 0.371 | 0.400 | — |
| chr22_30562613_C_G | chr22:30562613 | 0.287 | 0.325 | 0.406 | — |
| chr22_30562675_C_A | chr22:30562675 | 0.284 | 0.330 | 0.288 | — |
| chr22_30562670_C_A | chr22:30562670 | -0.279 | -0.343 | -0.500 | — |
| chr22_30562591_G_A | chr22:30562591 | -0.281 | -0.345 | -0.465 | — |
| chr22_30562637_G_C | chr22:30562637 | -0.281 | -0.284 | -0.471 | — |
| chr22_30635349_C_T | chr22:30635349 | -0.198 | -0.036 | -0.494 | — |
| chr22_30562624_C_A | chr22:30562624 | -0.256 | -0.279 | -0.488 | — |
| chr22_30562679_A_C | chr22:30562679 | -0.276 | -0.331 | -0.359 | — |
| chr22_30562630_G_A | chr22:30562630 | 0.274 | 0.332 | 0.288 | — |
| chr22_30562604_C_A | chr22:30562604 | -0.273 | -0.289 | -0.406 | 0.0013% |
| chr22_30562651_G_C | chr22:30562651 | -0.271 | -0.338 | -0.400 | — |
| chr22_30562653_G_A | chr22:30562653 | 0.267 | 0.368 | 0.318 | — |
| chr22_30562604_C_G | chr22:30562604 | -0.266 | -0.299 | -0.394 | 0.225% |
| chr22_30562712_G_C | chr22:30562712 | -0.265 | -0.308 | -0.403 | — |
| chr22_30562633_C_A | chr22:30562633 | 0.263 | 0.282 | 0.435 | — |
| chr22_30562708_T_A | chr22:30562708 | 0.262 | 0.315 | 0.262 | — |
| chr22_30562632_T_A | chr22:30562632 | -0.259 | -0.307 | -0.453 | — |
| chr22_30562651_G_T | chr22:30562651 | -0.258 | -0.371 | -0.412 | — |
| chr22_30562612_C_G | chr22:30562612 | 0.256 | 0.312 | 0.406 | — |
| chr22_30562593_C_G | chr22:30562593 | 0.251 | 0.269 | 0.447 | — |
| chr22_30562607_G_C | chr22:30562607 | -0.241 | -0.289 | -0.447 | — |
| chr22_30562614_A_G | chr22:30562614 | 0.249 | 0.282 | 0.447 | — |
| chr22_30562666_A_C | chr22:30562666 | -0.252 | -0.371 | -0.418 | — |
| chr22_30562663_T_A | chr22:30562663 | -0.194 | -0.272 | -0.441 | — |
| chr22_30562643_G_T | chr22:30562643 | -0.214 | -0.183 | -0.435 | — |
| chr22_30562661_G_C | chr22:30562661 | 0.150 | 0.096 | 0.435 | — |
| chr22_30562768_A_T | chr22:30562768 | 0.126 | 0.223 | 0.435 | — |
| chr22_30635401_G_T | chr22:30635401 | -0.130 | -0.057 | -0.435 | — |
| chr22_30562698_T_A | chr22:30562698 | 0.246 | 0.371 | 0.297 | — |
| chr22_30562614_A_C | chr22:30562614 | -0.245 | -0.261 | -0.341 | — |
| chr22_30562637_G_A | chr22:30562637 | -0.241 | -0.284 | -0.429 | 0.0020% |
| chr22_30562689_C_A | chr22:30562689 | -0.181 | -0.259 | -0.429 | — |
| chr22_30562706_T_C | chr22:30562706 | 0.242 | 0.345 | 0.276 | — |
| chr22_30562714_C_G | chr22:30562714 | 0.240 | 0.355 | 0.312 | — |
| chr22_30562637_G_T | chr22:30562637 | -0.239 | -0.251 | -0.418 | — |
| chr22_30562738_C_T | chr22:30562738 | -0.239 | -0.317 | -0.326 | — |
| chr22_30562696_T_G | chr22:30562696 | -0.238 | -0.315 | -0.347 | — |
| chr22_30562633_C_T | chr22:30562633 | 0.211 | 0.246 | 0.418 | — |
| chr22_30562593_C_A | chr22:30562593 | 0.223 | 0.294 | 0.412 | — |
| chr22_30562646_A_C | chr22:30562646 | 0.207 | 0.259 | 0.406 | — |
| chr22_30562666_A_G | chr22:30562666 | -0.227 | -0.327 | -0.406 | — |
| chr22_30562640_C_A | chr22:30562640 | -0.229 | -0.259 | -0.394 | — |
| chr22_30562664_G_A | chr22:30562664 | 0.228 | 0.208 | 0.371 | — |
| chr22_30562638_A_G | chr22:30562638 | 0.227 | 0.259 | 0.382 | — |
| chr22_30562636_C_A | chr22:30562636 | 0.226 | 0.201 | 0.265 | — |
| chr22_30562643_G_A | chr22:30562643 | -0.209 | -0.203 | -0.400 | 0.0039% |
| chr22_30562660_T_A | chr22:30562660 | -0.223 | -0.284 | -0.335 | — |
| chr22_30635388_C_G | chr22:30635388 | 0.033 | 0.014 | 0.388 | — |
| chr22_30635397_T_G | chr22:30635397 | 0.025 | 0.032 | 0.388 | — |
| chr22_30562609_C_A | chr22:30562609 | 0.218 | 0.234 | 0.294 | — |
| chr22_30562649_T_A | chr22:30562649 | -0.214 | -0.264 | -0.382 | — |
| chr22_30562657_G_C | chr22:30562657 | -0.166 | -0.216 | -0.382 | — |
| chr22_30562680_C_A | chr22:30562680 | -0.200 | -0.313 | -0.382 | 0.0013% |
| chr22_30562716_G_C | chr22:30562716 | -0.214 | -0.250 | -0.274 | — |
| chr22_30562646_A_T | chr22:30562646 | 0.204 | 0.165 | 0.376 | — |
| chr22_30562739_A_C | chr22:30562739 | -0.212 | -0.294 | -0.291 | — |
| chr22_30562675_C_G | chr22:30562675 | 0.210 | 0.305 | 0.188 | — |
| chr22_30562612_C_A | chr22:30562612 | 0.210 | 0.272 | 0.300 | — |
| chr22_30562631_C_G | chr22:30562631 | -0.182 | -0.213 | -0.371 | — |
| chr22_30562694_G_C | chr22:30562694 | 0.142 | 0.202 | 0.371 | — |
| chr22_30562605_A_C | chr22:30562605 | 0.208 | 0.231 | 0.259 | — |
| chr22_30562735_G_A | chr22:30562735 | -0.208 | -0.277 | -0.332 | — |
| chr22_30562589_A_G | chr22:30562589 | 0.146 | 0.201 | 0.359 | — |
| chr22_30562660_T_C | chr22:30562660 | -0.203 | -0.269 | -0.247 | <0.001% |
| chr22_30562667_T_C | chr22:30562667 | -0.202 | -0.264 | -0.341 | — |
| chr22_30562649_T_G | chr22:30562649 | 0.172 | 0.155 | 0.353 | — |
| chr22_30635387_C_G | chr22:30635387 | 0.065 | 0.015 | 0.353 | — |
| chr22_30635389_C_G | chr22:30635389 | 0.050 | 0.014 | 0.353 | — |
| chr22_30562678_G_C | chr22:30562678 | -0.199 | -0.284 | -0.265 | — |
| chr22_30562608_C_A | chr22:30562608 | -0.198 | -0.256 | -0.288 | — |
| chr22_30562641_C_A | chr22:30562641 | -0.191 | -0.198 | -0.347 | — |
| chr22_30562673_C_A | chr22:30562673 | -0.029 | -0.107 | -0.347 | — |
| chr22_30562650_G_T | chr22:30562650 | -0.196 | -0.284 | -0.182 | — |
| chr22_30562650_G_A | chr22:30562650 | 0.195 | 0.152 | 0.276 | — |
| chr22_30562670_C_G | chr22:30562670 | -0.195 | -0.218 | -0.329 | — |
| chr22_30635383_G_C | chr22:30635383 | 0.053 | 0.019 | 0.341 | — |
| chr22_30635392_G_T | chr22:30635392 | 0.015 | -0.044 | -0.341 | — |
| chr22_30562623_T_C | chr22:30562623 | -0.191 | -0.173 | -0.282 | — |
| chr22_30562658_T_C | chr22:30562658 | -0.191 | -0.228 | -0.194 | — |
| chr22_30562596_G_A | chr22:30562596 | -0.191 | -0.216 | -0.294 | 0.0039% |
| chr22_30562635_C_A | chr22:30562635 | 0.190 | 0.266 | 0.276 | — |
| chr22_30562666_A_T | chr22:30562666 | -0.120 | -0.165 | -0.335 | — |
| chr22_30562683_T_A | chr22:30562683 | 0.190 | 0.174 | 0.112 | — |
| chr22_30562685_A_T | chr22:30562685 | -0.117 | -0.189 | -0.335 | — |
| chr22_30562690_A_T | chr22:30562690 | -0.147 | -0.241 | -0.332 | — |
| chr22_30562705_C_G | chr22:30562705 | -0.166 | -0.204 | -0.332 | — |
| chr22_30562629_A_C | chr22:30562629 | 0.173 | 0.228 | 0.329 | — |
| chr22_30562642_T_A | chr22:30562642 | 0.186 | 0.269 | 0.153 | — |
| chr22_30562665_A_G | chr22:30562665 | -0.153 | -0.198 | -0.329 | <0.001% |
| chr22_30562691_G_C | chr22:30562691 | 0.186 | 0.236 | 0.300 | — |
| chr22_30562595_C_G | chr22:30562595 | 0.184 | 0.185 | 0.294 | — |
| chr22_30562689_C_T | chr22:30562689 | -0.131 | -0.189 | -0.324 | — |
| chr22_30562676_A_G | chr22:30562676 | 0.183 | 0.266 | 0.265 | — |
| chr22_30562601_A_C | chr22:30562601 | 0.181 | 0.152 | 0.253 | — |
Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.