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TLCD3A

This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.

Scored variants near TLCD3A

chr17:632,545..842,968, gene body plus 100 kb. Showing the strongest 200 by effect size.

Variant	Position	PXR	FXR	AhR	AF
chr17_714940_T_C	chr17:714940	0.439	0.345	1.000	<0.001%
chr17_714731_G_C	chr17:714731	-0.263	-0.373	-1.000	<0.001%
chr17_714952_C_T	chr17:714952	0.398	0.218	0.894	0.013%
chr17_714876_C_G	chr17:714876	0.100	-0.277	-0.882	0.156%
chr17_714723_C_T	chr17:714723	0.201	0.216	0.788	<0.001%
chr17_714727_T_C	chr17:714727	-0.153	-0.213	-0.788	0.0066%
chr17_714957_T_C	chr17:714957	-0.090	-0.259	-0.729	<0.001%
chr17_714857_C_G	chr17:714857	0.206	-0.185	-0.706	<0.001%
chr17_714726_C_G	chr17:714726	0.181	0.152	0.682	<0.001%
chr17_714888_A_C	chr17:714888	0.379	0.261	0.318	0.0020%
chr17_714936_G_A	chr17:714936	-0.290	-0.089	-0.612	0.0013%
chr17_714947_G_A	chr17:714947	0.216	0.102	0.612	<0.001%
chr17_714853_C_A	chr17:714853	0.339	0.000	-0.235	0.0013%
chr17_714740_C_T	chr17:714740	0.083	0.180	0.588	<0.001%
chr17_714548_G_C	chr17:714548	-0.037	-0.091	-0.576	0.0046%
chr17_714737_C_T	chr17:714737	0.131	0.178	0.553	<0.001%
chr17_714857_C_T	chr17:714857	0.256	-0.122	-0.553	<0.001%
chr17_714882_C_A	chr17:714882	0.313	0.180	0.306	<0.001%
chr17_714932_G_T	chr17:714932	-0.171	-0.079	-0.541	0.0013%
chr17_714934_C_G	chr17:714934	-0.270	-0.025	0.494	<0.001%
chr17_714750_A_C	chr17:714750	-0.203	-0.119	-0.482	0.0026%
chr17_714815_G_A	chr17:714815	0.273	0.277	0.294	0.0020%
chr17_714856_C_T	chr17:714856	0.246	-0.063	-0.459	<0.001%
chr17_714805_G_T	chr17:714805	-0.093	-0.145	-0.447	<0.001%
chr17_714739_C_T	chr17:714739	0.090	0.157	0.435	<0.001%
chr17_714766_G_C	chr17:714766	-0.231	-0.076	-0.424	<0.001%
chr17_714858_G_C	chr17:714858	0.097	-0.188	-0.424	0.0026%
chr17_714979_C_T	chr17:714979	-0.211	-0.155	-0.424	0.117%
chr17_715044_C_T	chr17:715044	0.215	0.079	0.329	0.0033%
chr17_714878_G_A	chr17:714878	0.203	-0.069	-0.376	0.0013%
chr17_652620_T_G	chr17:652620	0.072	0.023	0.353	—
chr17_714881_C_G	chr17:714881	-0.196	-0.036	-0.259	<0.001%
chr17_714924_C_T	chr17:714924	-0.196	0.046	-0.024	<0.001%
chr17_714555_C_A	chr17:714555	0.040	0.043	0.341	<0.001%
chr17_715034_A_C	chr17:715034	0.189	0.109	0.318	<0.001%
chr17_714804_C_T	chr17:714804	0.186	0.236	0.282	0.0020%
chr17_714837_G_A	chr17:714837	0.183	-0.008	0.000	0.015%
chr17_715045_C_G	chr17:715045	0.182	0.056	0.165	<0.001%
chr17_714866_A_C	chr17:714866	-0.146	-0.102	-0.306	<0.001%
chr17_714929_C_T	chr17:714929	-0.121	0.046	-0.306	0.0013%
chr17_714860_C_G	chr17:714860	-0.170	-0.018	-0.118	60.0%
chr17_714522_C_T	chr17:714522	0.062	0.081	0.294	0.0026%
chr17_714526_C_T	chr17:714526	0.045	0.043	0.294	0.0053%
chr17_714959_T_C	chr17:714959	0.120	0.127	0.294	<0.001%
chr17_714506_T_C	chr17:714506	0.020	-0.036	-0.282	0.016%
chr17_714712_C_T	chr17:714712	0.050	0.084	0.282	0.0033%
chr17_714966_G_A	chr17:714966	-0.158	0.043	-0.035	<0.001%
chr17_661527_A_G	chr17:661527	0.013	0.043	0.262	—
chr17_714540_C_T	chr17:714540	0.022	0.038	0.259	<0.001%
chr17_714824_C_G	chr17:714824	0.146	0.038	0.200	0.0026%
chr17_661528_A_G	chr17:661528	0.013	0.043	0.256	—
chr17_661529_A_G	chr17:661529	0.013	0.043	0.256	—
chr17_714775_G_A	chr17:714775	-0.143	-0.023	-0.200	<0.001%
chr17_661526_A_G	chr17:661526	0.012	0.036	0.250	—
chr17_715060_G_C	chr17:715060	0.141	0.003	0.165	<0.001%
chr17_661529_A_C	chr17:661529	0.012	0.047	0.241	—
chr17_661528_A_C	chr17:661528	0.013	0.042	0.224	—
chr17_714542_C_A	chr17:714542	0.027	0.053	0.224	0.0039%
chr17_714731_G_A	chr17:714731	0.126	0.043	0.153	<0.001%
chr17_714993_A_G	chr17:714993	0.047	0.084	0.224	0.307%
chr17_715055_G_A	chr17:715055	0.126	0.071	0.153	0.0013%
chr17_661525_A_G	chr17:661525	0.009	0.029	0.218	—
chr17_661526_A_C	chr17:661526	0.012	0.037	0.215	—
chr17_661527_A_C	chr17:661527	0.012	0.046	0.215	—
chr17_714787_C_A	chr17:714787	-0.121	0.005	0.035	0.0033%
chr17_661530_A_C	chr17:661530	0.009	0.041	0.212	—
chr17_661530_A_G	chr17:661530	0.012	0.038	0.212	—
chr17_661531_A_G	chr17:661531	0.012	0.038	0.212	—
chr17_714757_C_A	chr17:714757	-0.022	-0.048	-0.212	<0.001%
chr17_714808_C_G	chr17:714808	-0.015	0.033	0.212	<0.001%
chr17_714886_G_A	chr17:714886	0.050	0.010	0.212	0.0013%
chr17_714901_G_A	chr17:714901	-0.003	-0.023	-0.212	<0.001%
chr17_661531_A_C	chr17:661531	0.009	0.038	0.200	—
chr17_714580_C_T	chr17:714580	0.027	0.033	0.200	0.0072%
chr17_714805_G_A	chr17:714805	-0.090	-0.140	-0.200	0.0013%
chr17_714836_T_C	chr17:714836	-0.113	0.033	0.071	0.0026%
chr17_715030_C_T	chr17:715030	0.027	0.086	0.200	<0.001%
chr17_652591_A_C	chr17:652591	-0.112	-0.053	-0.162	—
chr17_661525_A_C	chr17:661525	0.010	0.036	0.191	—
chr17_714825_G_C	chr17:714825	-0.050	-0.117	-0.188	0.0013%
chr17_714831_C_A	chr17:714831	-0.080	0.066	0.188	<0.001%
chr17_714925_C_T	chr17:714925	-0.103	0.015	-0.188	0.0059%
chr17_714946_G_T	chr17:714946	-0.100	0.015	-0.188	1.55%
chr17_661532_A_G	chr17:661532	0.009	0.034	0.185	—
chr17_661526_A_T	chr17:661526	0.015	0.039	0.182	—
chr17_661528_A_T	chr17:661528	0.015	0.044	0.182	—
chr17_661532_A_C	chr17:661532	0.007	0.034	0.182	—
chr17_714829_G_A	chr17:714829	0.103	0.061	-0.082	0.0013%
chr17_714890_T_C	chr17:714890	0.103	0.048	0.118	0.0066%
chr17_661529_A_T	chr17:661529	0.015	0.046	0.179	—
chr17_661533_A_C	chr17:661533	0.010	0.024	0.179	—
chr17_661533_A_G	chr17:661533	0.009	0.025	0.179	—
chr17_714972_G_C	chr17:714972	-0.050	0.104	-0.176	<0.001%
chr17_715008_T_A	chr17:715008	-0.020	0.005	0.176	<0.001%
chr17_652548_A_C	chr17:652548	-0.098	0.018	-0.068	—
chr17_652573_G_A	chr17:652573	-0.055	0.091	-0.174	—
chr17_661524_A_G	chr17:661524	0.007	0.023	0.171	—
chr17_661527_A_T	chr17:661527	0.012	0.048	0.171	—
chr17_661549_C_A	chr17:661549	-0.004	-0.023	-0.171	—
chr17_714623_C_T	chr17:714623	-0.097	0.008	0.012	0.0020%
chr17_714801_C_A	chr17:714801	-0.097	0.061	0.047	0.0072%
chr17_714870_C_T	chr17:714870	0.097	-0.018	-0.165	<0.001%
chr17_652593_C_G	chr17:652593	0.095	0.018	0.147	—
chr17_652624_C_T	chr17:652624	-0.094	-0.044	-0.115	—
chr17_714819_G_A	chr17:714819	-0.040	0.066	0.165	0.0013%
chr17_715016_C_G	chr17:715016	0.077	0.061	0.165	0.0013%
chr17_661530_A_T	chr17:661530	0.014	0.041	0.156	—
chr17_652580_T_G	chr17:652580	0.059	0.011	0.153	—
chr17_661525_A_T	chr17:661525	0.013	0.038	0.153	—
chr17_714508_C_T	chr17:714508	-0.012	0.038	0.153	<0.001%
chr17_714809_T_G	chr17:714809	0.063	-0.089	-0.153	0.0013%
chr17_652573_G_C	chr17:652573	-0.053	0.081	-0.147	—
chr17_661531_A_T	chr17:661531	0.012	0.041	0.147	0.0013%
chr17_661523_A_G	chr17:661523	0.007	0.020	0.144	—
chr17_661524_A_T	chr17:661524	0.012	0.032	0.144	—
chr17_661533_A_T	chr17:661533	0.012	0.029	0.144	—
chr17_661534_A_C	chr17:661534	0.008	0.016	0.144	—
chr17_661622_C_T	chr17:661622	-0.004	-0.034	0.144	—
chr17_652600_C_A	chr17:652600	0.081	-0.049	0.112	0.0013%
chr17_714687_T_C	chr17:714687	-0.067	-0.028	-0.141	<0.001%
chr17_714867_G_T	chr17:714867	0.003	-0.005	-0.141	<0.001%
chr17_714901_G_T	chr17:714901	-0.022	-0.030	-0.141	<0.001%
chr17_714946_G_C	chr17:714946	0.018	0.020	0.141	<0.001%
chr17_661534_A_G	chr17:661534	0.007	0.016	0.138	—
chr17_714796_C_T	chr17:714796	0.078	0.053	0.035	0.0020%
chr17_661524_A_C	chr17:661524	0.005	0.023	0.135	—
chr17_661532_A_T	chr17:661532	0.008	0.038	0.129	—
chr17_714565_G_C	chr17:714565	0.012	-0.013	-0.129	<0.001%
chr17_714575_C_G	chr17:714575	-0.002	0.003	0.129	<0.001%
chr17_714757_C_T	chr17:714757	-0.023	-0.023	-0.129	<0.001%
chr17_714994_G_A	chr17:714994	0.042	-0.020	-0.129	3.13%
chr17_715018_C_T	chr17:715018	0.005	-0.025	-0.129	0.0026%
chr17_652519_T_G	chr17:652519	0.072	-0.018	0.097	0.0013%
chr17_652573_G_T	chr17:652573	-0.025	0.100	-0.126	—
chr17_714913_C_G	chr17:714913	-0.072	-0.030	0.000	0.0013%
chr17_652523_G_T	chr17:652523	-0.071	-0.005	-0.109	—
chr17_661535_A_C	chr17:661535	0.001	0.015	0.124	—
chr17_714844_G_C	chr17:714844	0.070	0.053	-0.012	<0.001%
chr17_652516_C_T	chr17:652516	0.069	0.067	-0.079	<0.001%
chr17_661535_A_G	chr17:661535	0.003	0.013	0.121	<0.001%
chr17_652582_C_T	chr17:652582	-0.035	0.063	-0.118	—
chr17_714548_G_A	chr17:714548	0.033	-0.005	-0.118	<0.001%
chr17_714793_C_T	chr17:714793	0.067	0.056	0.035	<0.001%
chr17_714909_G_A	chr17:714909	0.035	-0.003	-0.118	<0.001%
chr17_714974_G_A	chr17:714974	0.032	-0.063	-0.118	<0.001%
chr17_652511_C_A	chr17:652511	-0.027	-0.039	-0.115	—
chr17_652555_A_G	chr17:652555	0.019	-0.024	0.115	—
chr17_652590_C_T	chr17:652590	0.027	0.056	-0.115	—
chr17_661523_A_T	chr17:661523	0.007	0.015	0.115	—
chr17_661534_A_T	chr17:661534	0.010	0.023	0.115	—
chr17_661535_A_T	chr17:661535	0.007	0.029	0.115	—
chr17_714710_T_G	chr17:714710	-0.063	-0.030	-0.106	<0.001%
chr17_714777_C_T	chr17:714777	0.063	-0.005	-0.035	<0.001%
chr17_714962_C_T	chr17:714962	0.063	0.020	-0.082	<0.001%
chr17_652571_T_C	chr17:652571	-0.037	0.034	-0.109	—
chr17_652574_C_T	chr17:652574	-0.013	0.140	-0.109	—
chr17_652614_T_A	chr17:652614	0.061	0.030	0.103	—
chr17_652515_A_T	chr17:652515	0.038	-0.030	0.106	—
chr17_661523_A_C	chr17:661523	0.003	0.014	0.106	—
chr17_714812_T_C	chr17:714812	0.060	-0.048	-0.106	<0.001%
chr17_714820_G_A	chr17:714820	-0.060	0.053	0.059	0.0079%
chr17_652580_T_C	chr17:652580	-0.018	0.076	-0.103	—
chr17_652598_A_G	chr17:652598	0.032	-0.014	0.103	<0.001%
chr17_652547_C_T	chr17:652547	0.057	0.082	-0.047	—
chr17_652611_C_T	chr17:652611	-0.027	-0.004	-0.100	—
chr17_661559_C_A	chr17:661559	-0.002	-0.003	-0.100	—
chr17_661620_A_C	chr17:661620	0.006	-0.018	0.100	—
chr17_714810_G_A	chr17:714810	0.057	0.041	0.094	0.0013%
chr17_714983_G_A	chr17:714983	-0.057	0.010	-0.047	0.0021%
chr17_652520_G_C	chr17:652520	0.039	0.041	0.097	—
chr17_652556_A_G	chr17:652556	0.047	0.009	0.097	—
chr17_652623_G_A	chr17:652623	-0.018	0.046	-0.097	0.184%
chr17_661564_C_A	chr17:661564	-0.000	-0.009	-0.097	—
chr17_652522_G_A	chr17:652522	-0.027	0.020	-0.094	0.035%
chr17_652533_C_A	chr17:652533	-0.007	0.006	-0.094	—
chr17_652581_C_A	chr17:652581	-0.026	0.104	-0.094	—
chr17_652581_C_T	chr17:652581	-0.039	0.052	-0.094	—
chr17_652583_C_A	chr17:652583	0.047	0.086	0.094	—
chr17_661522_A_G	chr17:661522	0.006	0.016	0.094	—
chr17_661538_T_A	chr17:661538	-0.005	-0.027	-0.094	0.222%
chr17_661550_A_G	chr17:661550	0.003	0.015	0.094	—
chr17_661560_A_G	chr17:661560	0.004	0.004	0.094	—
chr17_714588_C_A	chr17:714588	0.010	0.010	0.094	0.0059%
chr17_714591_C_G	chr17:714591	0.022	0.018	0.094	<0.001%
chr17_714796_C_A	chr17:714796	0.053	0.089	0.059	<0.001%
chr17_714813_G_A	chr17:714813	0.027	0.028	0.094	<0.001%
chr17_714868_G_A	chr17:714868	0.003	-0.025	-0.094	<0.001%
chr17_661648_A_T	chr17:661648	0.053	0.028	0.000	—
chr17_652549_A_T	chr17:652549	-0.025	0.091	0.091	—
chr17_652575_C_A	chr17:652575	0.052	0.048	0.068	—
chr17_652603_G_C	chr17:652603	0.018	0.030	0.091	—
chr17_652605_A_T	chr17:652605	-0.017	0.095	0.091	0.0013%
chr17_652610_G_C	chr17:652610	-0.026	0.011	-0.091	<0.001%
chr17_714911_G_A	chr17:714911	0.052	0.056	0.000	<0.001%
chr17_714966_G_T	chr17:714966	-0.052	-0.003	0.024	0.0027%
chr17_652515_A_C	chr17:652515	0.048	-0.041	0.088	—
chr17_652526_G_T	chr17:652526	-0.020	-0.056	-0.088	—
chr17_652585_G_A	chr17:652585	0.001	0.036	-0.088	<0.001%
chr17_652589_A_G	chr17:652589	0.050	-0.024	0.082	—
chr17_652627_A_T	chr17:652627	-0.045	0.006	-0.088	—

Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.