Home / Gene

TPGS1

This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.

Scored variants near TPGS1

chr19:407,496..619,654, gene body plus 100 kb. Showing the strongest 200 by effect size.

Variant	Position	PXR	FXR	AhR	AF
chr19_409595_T_A	chr19:409595	-0.020	0.053	0.447	—
chr19_407762_A_C	chr19:407762	-0.015	-0.053	-0.312	—
chr19_407517_C_T	chr19:407517	0.012	0.033	0.276	0.0020%
chr19_407781_T_C	chr19:407781	-0.014	-0.035	-0.276	—
chr19_407766_T_C	chr19:407766	-0.017	-0.048	-0.265	—
chr19_407759_G_C	chr19:407759	-0.009	-0.036	-0.253	—
chr19_407526_C_T	chr19:407526	0.012	0.036	0.241	0.0079%
chr19_409596_C_T	chr19:409596	0.047	0.074	0.241	—
chr19_412190_G_T	chr19:412190	0.044	0.060	0.241	<0.001%
chr19_407527_G_A	chr19:407527	0.003	0.032	0.226	0.0013%
chr19_409705_T_G	chr19:409705	0.038	0.065	0.224	—
chr19_407508_G_A	chr19:407508	0.014	0.025	0.212	0.0020%
chr19_407525_G_T	chr19:407525	0.006	0.033	0.212	<0.001%
chr19_407509_G_A	chr19:407509	0.004	0.024	0.206	0.0013%
chr19_407535_C_A	chr19:407535	0.007	0.030	0.206	<0.001%
chr19_407530_G_A	chr19:407530	0.003	0.033	0.203	0.0033%
chr19_407505_G_A	chr19:407505	0.002	0.029	0.200	0.028%
chr19_407515_G_A	chr19:407515	0.007	0.029	0.200	0.0026%
chr19_407533_G_A	chr19:407533	0.007	0.028	0.200	0.0013%
chr19_407758_C_A	chr19:407758	0.012	0.023	0.188	—
chr19_407777_C_T	chr19:407777	0.010	0.024	0.182	—
chr19_407778_C_A	chr19:407778	0.005	0.023	0.182	—
chr19_407757_C_T	chr19:407757	0.009	0.025	0.176	—
chr19_407758_C_T	chr19:407758	0.013	0.025	0.176	—
chr19_407783_A_C	chr19:407783	0.008	-0.021	-0.176	—
chr19_407546_G_A	chr19:407546	0.003	0.020	0.171	0.0013%
chr19_407811_C_A	chr19:407811	0.012	0.019	0.171	<0.001%
chr19_407817_C_A	chr19:407817	0.005	0.017	0.171	—
chr19_407514_C_T	chr19:407514	0.011	0.024	0.165	0.014%
chr19_407757_C_A	chr19:407757	0.007	0.027	0.165	—
chr19_407770_T_C	chr19:407770	-0.008	-0.030	-0.165	—
chr19_407776_C_T	chr19:407776	0.015	0.023	0.165	—
chr19_407817_C_T	chr19:407817	0.009	0.024	0.165	<0.001%
chr19_409591_A_G	chr19:409591	0.009	0.010	0.165	<0.001%
chr19_407532_C_T	chr19:407532	0.007	0.027	0.162	<0.001%
chr19_407535_C_T	chr19:407535	0.002	0.022	0.162	<0.001%
chr19_407506_G_C	chr19:407506	-0.018	-0.022	-0.159	<0.001%
chr19_407553_G_A	chr19:407553	0.016	0.021	0.159	1.14%
chr19_407763_G_C	chr19:407763	-0.008	-0.024	-0.159	—
chr19_407777_C_A	chr19:407777	0.005	0.026	0.159	—
chr19_407778_C_T	chr19:407778	0.009	0.025	0.159	—
chr19_409616_T_G	chr19:409616	-0.035	-0.025	-0.159	—
chr19_409648_A_C	chr19:409648	0.016	0.034	0.159	—
chr19_407786_C_T	chr19:407786	-0.004	0.018	0.153	—
chr19_407818_C_T	chr19:407818	0.007	0.014	0.153	0.0013%
chr19_409726_G_T	chr19:409726	-0.039	-0.061	-0.153	—
chr19_407768_C_A	chr19:407768	0.008	0.017	0.147	—
chr19_407785_C_T	chr19:407785	0.007	0.016	0.147	—
chr19_407814_C_A	chr19:407814	0.010	0.025	0.147	—
chr19_407819_G_T	chr19:407819	0.005	0.016	0.147	—
chr19_409710_G_C	chr19:409710	0.041	0.037	0.147	—
chr19_409727_C_G	chr19:409727	-0.031	-0.016	-0.147	—
chr19_407531_C_T	chr19:407531	0.006	0.023	0.144	<0.001%
chr19_407540_G_A	chr19:407540	0.002	0.017	0.141	0.0079%
chr19_407582_G_A	chr19:407582	0.021	0.014	0.141	0.0099%
chr19_407776_C_A	chr19:407776	0.007	0.018	0.141	—
chr19_407806_C_T	chr19:407806	0.006	0.022	0.141	—
chr19_407811_C_G	chr19:407811	0.013	0.010	0.141	0.0026%
chr19_409602_A_G	chr19:409602	0.023	0.020	0.141	—
chr19_409603_C_G	chr19:409603	0.016	0.030	0.141	—
chr19_407539_C_T	chr19:407539	0.007	0.016	0.135	0.0033%
chr19_407548_C_T	chr19:407548	0.008	0.018	0.135	0.0013%
chr19_407756_C_A	chr19:407756	0.010	0.024	0.135	—
chr19_407758_C_G	chr19:407758	0.009	0.019	0.135	—
chr19_407779_C_T	chr19:407779	0.015	0.016	0.135	—
chr19_407786_C_A	chr19:407786	0.002	0.018	0.135	—
chr19_407804_T_C	chr19:407804	-0.007	-0.020	-0.135	—
chr19_407815_G_T	chr19:407815	0.010	0.019	0.135	—
chr19_409590_G_A	chr19:409590	-0.017	-0.023	-0.135	—
chr19_409599_A_G	chr19:409599	0.007	0.038	0.135	—
chr19_409690_G_C	chr19:409690	0.010	0.051	0.135	—
chr19_412177_C_A	chr19:412177	0.003	-0.004	-0.135	<0.001%
chr19_412250_G_C	chr19:412250	-0.025	-0.032	-0.135	0.0059%
chr19_407549_G_A	chr19:407549	0.010	0.017	0.129	0.0013%
chr19_407756_C_T	chr19:407756	0.014	0.024	0.129	—
chr19_407776_C_G	chr19:407776	0.007	0.022	0.129	—
chr19_407779_C_A	chr19:407779	0.012	0.015	0.129	—
chr19_407784_C_T	chr19:407784	0.005	0.019	0.129	—
chr19_407811_C_T	chr19:407811	0.005	0.013	0.129	0.0033%
chr19_407814_C_T	chr19:407814	-0.002	0.021	0.129	0.0026%
chr19_407816_C_T	chr19:407816	0.004	0.017	0.129	—
chr19_409655_G_C	chr19:409655	-0.003	-0.014	0.129	—
chr19_409708_A_T	chr19:409708	0.045	0.048	0.129	—
chr19_407534_G_C	chr19:407534	0.003	0.020	0.126	<0.001%
chr19_407512_C_A	chr19:407512	0.005	0.022	0.124	0.0013%
chr19_407801_A_G	chr19:407801	-0.012	-0.015	-0.124	0.0026%
chr19_407812_G_A	chr19:407812	0.012	0.019	0.124	0.0013%
chr19_407812_G_T	chr19:407812	0.002	0.018	0.124	—
chr19_407818_C_A	chr19:407818	0.002	0.019	0.124	—
chr19_409641_A_C	chr19:409641	0.021	0.025	0.124	—
chr19_412461_C_A	chr19:412461	0.014	0.011	0.124	<0.001%
chr19_407564_G_A	chr19:407564	0.013	0.020	0.118	<0.001%
chr19_407806_C_A	chr19:407806	-0.001	0.011	0.118	—
chr19_407809_G_T	chr19:407809	0.017	0.018	0.118	—
chr19_409595_T_G	chr19:409595	0.003	0.013	0.118	—
chr19_409667_A_C	chr19:409667	0.007	0.018	0.118	—
chr19_412440_G_A	chr19:412440	-0.016	-0.015	-0.118	<0.001%
chr19_407769_C_A	chr19:407769	-0.001	0.013	0.112	—
chr19_407787_C_T	chr19:407787	0.005	0.015	0.112	—
chr19_407801_A_C	chr19:407801	-0.017	-0.010	-0.112	—
chr19_407823_C_T	chr19:407823	0.001	0.008	0.112	<0.001%
chr19_407830_A_C	chr19:407830	-0.016	-0.019	-0.112	—
chr19_409614_G_T	chr19:409614	-0.002	0.028	0.112	—
chr19_409616_T_C	chr19:409616	-0.021	-0.006	-0.112	—
chr19_409632_A_G	chr19:409632	0.034	0.025	0.112	—
chr19_409666_C_A	chr19:409666	-0.010	-0.016	-0.112	—
chr19_407718_T_C	chr19:407718	-0.002	-0.001	-0.106	—
chr19_407740_C_A	chr19:407740	0.011	0.006	0.106	—
chr19_407782_C_A	chr19:407782	0.007	0.010	0.106	—
chr19_407782_C_T	chr19:407782	0.002	0.010	0.106	—
chr19_407785_C_A	chr19:407785	0.007	0.013	0.106	<0.001%
chr19_407790_T_C	chr19:407790	-0.003	-0.008	-0.106	—
chr19_407791_T_C	chr19:407791	0.000	-0.006	-0.106	0.0039%
chr19_407804_T_G	chr19:407804	-0.010	-0.013	-0.106	—
chr19_407808_C_T	chr19:407808	0.012	0.010	0.106	0.014%
chr19_407823_C_A	chr19:407823	-0.004	0.008	0.106	—
chr19_407846_A_C	chr19:407846	-0.017	-0.010	-0.106	—
chr19_409630_T_C	chr19:409630	0.004	-0.010	0.106	—
chr19_409654_G_C	chr19:409654	0.013	-0.010	0.106	0.0092%
chr19_409661_C_G	chr19:409661	0.025	0.014	0.106	—
chr19_409680_G_C	chr19:409680	-0.016	-0.024	-0.106	—
chr19_412492_A_C	chr19:412492	-0.021	-0.011	-0.106	0.0020%
chr19_407754_G_C	chr19:407754	-0.004	-0.015	-0.100	—
chr19_407767_C_T	chr19:407767	0.000	0.011	0.100	—
chr19_407775_C_T	chr19:407775	0.011	0.016	0.100	—
chr19_407779_C_G	chr19:407779	0.013	0.012	0.100	—
chr19_407787_C_A	chr19:407787	0.003	0.018	0.100	—
chr19_407788_C_T	chr19:407788	0.002	0.011	0.100	—
chr19_407808_C_A	chr19:407808	0.003	0.010	0.100	—
chr19_409617_C_G	chr19:409617	0.002	-0.022	-0.100	—
chr19_409617_C_T	chr19:409617	-0.007	-0.011	-0.100	—
chr19_409620_A_G	chr19:409620	0.015	0.015	0.100	0.0026%
chr19_409623_G_A	chr19:409623	-0.001	-0.013	-0.100	—
chr19_409638_T_A	chr19:409638	-0.013	-0.015	-0.100	—
chr19_409642_T_C	chr19:409642	0.014	0.014	0.100	—
chr19_409651_T_G	chr19:409651	0.007	-0.018	-0.100	—
chr19_409724_C_G	chr19:409724	-0.016	-0.027	-0.100	—
chr19_407552_C_T	chr19:407552	0.014	0.011	0.094	0.964%
chr19_407556_G_A	chr19:407556	0.007	0.011	0.094	<0.001%
chr19_407568_G_A	chr19:407568	0.008	0.011	0.094	0.0066%
chr19_407760_C_T	chr19:407760	0.006	0.020	0.094	—
chr19_407784_C_A	chr19:407784	0.003	0.010	0.094	—
chr19_407813_G_T	chr19:407813	0.002	0.015	0.094	—
chr19_407815_G_A	chr19:407815	0.009	0.016	0.094	0.0092%
chr19_407816_C_A	chr19:407816	0.005	0.011	0.094	—
chr19_407819_G_A	chr19:407819	0.005	0.011	0.094	<0.001%
chr19_407825_T_C	chr19:407825	-0.010	-0.011	-0.094	—
chr19_407848_C_T	chr19:407848	0.003	0.006	0.094	—
chr19_409592_C_T	chr19:409592	-0.006	-0.018	-0.094	0.0046%
chr19_409655_G_A	chr19:409655	0.002	-0.013	0.094	—
chr19_409656_G_C	chr19:409656	0.010	-0.028	0.094	—
chr19_409667_A_G	chr19:409667	0.016	0.057	0.094	—
chr19_412177_C_G	chr19:412177	0.009	-0.004	-0.094	0.041%
chr19_412236_G_T	chr19:412236	0.017	0.014	0.094	0.0020%
chr19_407755_C_T	chr19:407755	0.015	0.015	0.091	—
chr19_407777_C_G	chr19:407777	0.006	0.019	0.088	—
chr19_407788_C_A	chr19:407788	0.003	0.013	0.088	—
chr19_407820_G_T	chr19:407820	0.008	0.022	0.088	—
chr19_407825_T_G	chr19:407825	-0.007	-0.014	-0.088	—
chr19_407838_T_C	chr19:407838	0.006	-0.006	-0.088	0.0013%
chr19_409611_G_A	chr19:409611	-0.002	-0.016	-0.088	—
chr19_409634_T_G	chr19:409634	0.006	0.028	0.088	—
chr19_409665_C_A	chr19:409665	0.006	-0.001	-0.088	—
chr19_409680_G_A	chr19:409680	-0.016	-0.015	-0.088	<0.001%
chr19_409718_T_G	chr19:409718	0.012	0.018	0.088	—
chr19_409720_T_G	chr19:409720	0.009	0.016	0.088	—
chr19_412465_G_C	chr19:412465	0.019	-0.010	0.088	0.0053%
chr19_412500_C_G	chr19:412500	-0.042	-0.009	-0.088	0.0013%
chr19_407586_C_T	chr19:407586	0.008	0.008	0.085	0.0020%
chr19_407591_C_T	chr19:407591	0.004	0.012	0.082	<0.001%
chr19_407593_C_T	chr19:407593	0.007	0.010	0.082	<0.001%
chr19_407721_C_A	chr19:407721	-0.004	0.004	0.082	—
chr19_407757_C_G	chr19:407757	0.007	0.015	0.082	—
chr19_407766_T_G	chr19:407766	-0.002	-0.010	-0.082	—
chr19_407767_C_A	chr19:407767	-0.007	0.001	0.082	—
chr19_407769_C_T	chr19:407769	-0.002	0.012	0.082	—
chr19_407775_C_A	chr19:407775	0.019	0.020	0.082	<0.001%
chr19_407807_C_T	chr19:407807	0.010	0.012	0.082	—
chr19_407814_C_G	chr19:407814	0.002	0.018	0.082	—
chr19_407830_A_G	chr19:407830	-0.007	-0.004	-0.082	—
chr19_407835_A_G	chr19:407835	-0.002	-0.001	-0.082	—
chr19_409624_C_A	chr19:409624	-0.015	-0.023	-0.082	—
chr19_409653_G_C	chr19:409653	0.009	-0.011	0.082	<0.001%
chr19_409660_T_G	chr19:409660	0.018	0.016	0.082	—
chr19_409662_C_G	chr19:409662	0.019	0.005	0.082	—
chr19_409694_G_A	chr19:409694	-0.016	-0.023	-0.082	<0.001%
chr19_409695_C_A	chr19:409695	-0.021	-0.019	-0.082	—
chr19_409703_A_G	chr19:409703	-0.002	0.013	0.082	—
chr19_409709_T_C	chr19:409709	0.017	0.018	0.082	—
chr19_409716_C_G	chr19:409716	0.009	0.013	0.082	—
chr19_409724_C_A	chr19:409724	-0.013	-0.019	-0.082	—
chr19_412181_G_A	chr19:412181	0.007	0.005	-0.082	0.014%
chr19_412402_C_G	chr19:412402	-0.020	0.003	-0.082	<0.001%
chr19_407594_G_A	chr19:407594	0.002	0.010	0.079	0.0013%
chr19_407739_C_A	chr19:407739	0.007	0.008	0.079	—
chr19_407580_C_T	chr19:407580	0.011	0.011	0.076	<0.001%
chr19_407723_G_C	chr19:407723	0.001	0.008	-0.076	—
chr19_407740_C_T	chr19:407740	0.007	0.003	0.076	0.0033%
chr19_407741_G_T	chr19:407741	0.009	0.005	0.076	—
chr19_407759_G_T	chr19:407759	0.005	0.009	0.076	—

Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.