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TPM1
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near TPM1
chr15:62,942,746..63,171,914, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr15_62967375_C_A | chr15:62967375 | 0.397 | 0.447 | 1.000 | <0.001% |
| chr15_63010536_T_C | chr15:63010536 | 0.552 | 0.909 | 0.738 | — |
| chr15_62998471_T_G | chr15:62998471 | 0.483 | 0.735 | 0.918 | <0.001% |
| chr15_62998084_T_C | chr15:62998084 | 0.316 | 0.140 | 0.812 | 0.0013% |
| chr15_62967373_C_T | chr15:62967373 | 0.214 | 0.273 | 0.629 | 0.023% |
| chr15_63010534_T_G | chr15:63010534 | 0.314 | 0.510 | 0.453 | — |
| chr15_63006626_C_T | chr15:63006626 | 0.262 | 0.335 | 0.503 | 0.025% |
| chr15_62967310_C_A | chr15:62967310 | 0.056 | 0.110 | 0.474 | 0.0013% |
| chr15_62998378_A_G | chr15:62998378 | 0.211 | 0.339 | 0.450 | 0.0020% |
| chr15_62998512_G_A | chr15:62998512 | 0.131 | 0.188 | 0.450 | <0.001% |
| chr15_63010529_G_C | chr15:63010529 | 0.215 | 0.326 | 0.350 | — |
| chr15_63006663_G_A | chr15:63006663 | 0.214 | 0.240 | 0.321 | <0.001% |
| chr15_63006444_C_A | chr15:63006444 | 0.212 | 0.249 | 0.084 | <0.001% |
| chr15_63010497_G_C | chr15:63010497 | 0.192 | 0.228 | 0.268 | — |
| chr15_62995150_G_A | chr15:62995150 | 0.015 | 0.053 | -0.326 | <0.001% |
| chr15_62967314_A_G | chr15:62967314 | 0.050 | 0.102 | 0.306 | 0.0020% |
| chr15_63006246_C_T | chr15:63006246 | 0.164 | 0.242 | 0.212 | 0.0033% |
| chr15_63010538_T_A | chr15:63010538 | -0.162 | -0.195 | -0.238 | — |
| chr15_62967426_G_T | chr15:62967426 | 0.161 | 0.174 | 0.282 | <0.001% |
| chr15_63010496_G_C | chr15:63010496 | 0.161 | 0.206 | 0.241 | — |
| chr15_63010533_G_A | chr15:63010533 | -0.157 | -0.133 | -0.256 | <0.001% |
| chr15_63010542_C_T | chr15:63010542 | 0.151 | 0.166 | 0.194 | — |
| chr15_63010520_A_C | chr15:63010520 | 0.146 | 0.206 | 0.265 | — |
| chr15_63010535_T_C | chr15:63010535 | 0.147 | 0.180 | 0.235 | — |
| chr15_63010538_T_G | chr15:63010538 | -0.147 | -0.202 | -0.212 | — |
| chr15_63010497_G_T | chr15:63010497 | 0.145 | 0.160 | 0.165 | — |
| chr15_62998355_A_G | chr15:62998355 | 0.108 | 0.192 | 0.253 | <0.001% |
| chr15_63006600_A_G | chr15:63006600 | -0.079 | -0.104 | -0.250 | <0.001% |
| chr15_63010544_T_C | chr15:63010544 | 0.140 | 0.178 | 0.221 | — |
| chr15_63010545_G_T | chr15:63010545 | 0.131 | 0.184 | 0.247 | — |
| chr15_62998198_C_G | chr15:62998198 | -0.136 | -0.067 | -0.112 | <0.001% |
| chr15_63010540_G_A | chr15:63010540 | -0.134 | -0.173 | -0.226 | — |
| chr15_63010532_G_T | chr15:63010532 | 0.129 | 0.165 | 0.159 | — |
| chr15_63010538_T_C | chr15:63010538 | -0.129 | -0.176 | -0.182 | 0.0026% |
| chr15_63006598_C_T | chr15:63006598 | -0.075 | -0.077 | -0.221 | 0.0020% |
| chr15_63010537_A_C | chr15:63010537 | -0.117 | -0.140 | -0.218 | — |
| chr15_63010540_G_C | chr15:63010540 | -0.120 | -0.155 | -0.182 | — |
| chr15_63006674_T_C | chr15:63006674 | -0.072 | -0.100 | -0.209 | 0.0020% |
| chr15_63010499_A_C | chr15:63010499 | 0.118 | 0.142 | 0.168 | — |
| chr15_63010542_C_G | chr15:63010542 | -0.109 | -0.135 | -0.209 | — |
| chr15_63010537_A_T | chr15:63010537 | -0.101 | -0.132 | -0.206 | — |
| chr15_62967416_C_T | chr15:62967416 | -0.050 | -0.033 | -0.203 | 0.0013% |
| chr15_63010539_T_A | chr15:63010539 | -0.092 | -0.108 | -0.203 | — |
| chr15_63010532_G_A | chr15:63010532 | 0.112 | 0.180 | 0.144 | — |
| chr15_63010532_G_C | chr15:63010532 | 0.110 | 0.140 | 0.162 | — |
| chr15_62998396_C_T | chr15:62998396 | -0.109 | -0.129 | -0.162 | <0.001% |
| chr15_62967327_A_T | chr15:62967327 | 0.043 | 0.077 | 0.191 | 0.0079% |
| chr15_63010512_T_G | chr15:63010512 | 0.086 | 0.119 | 0.191 | — |
| chr15_63010524_C_A | chr15:63010524 | -0.097 | -0.112 | -0.191 | — |
| chr15_63010528_T_C | chr15:63010528 | 0.094 | 0.131 | 0.191 | — |
| chr15_63010541_A_C | chr15:63010541 | -0.108 | -0.088 | -0.176 | — |
| chr15_62998696_G_A | chr15:62998696 | -0.036 | -0.104 | -0.188 | <0.001% |
| chr15_62998296_C_A | chr15:62998296 | -0.091 | -0.094 | -0.185 | <0.001% |
| chr15_63010521_G_C | chr15:63010521 | 0.105 | 0.138 | 0.182 | — |
| chr15_63006338_C_T | chr15:63006338 | 0.008 | 0.018 | 0.181 | 0.272% |
| chr15_63006328_C_A | chr15:63006328 | 0.022 | 0.023 | 0.179 | <0.001% |
| chr15_63006340_C_T | chr15:63006340 | 0.015 | 0.027 | 0.179 | 0.0058% |
| chr15_63010514_C_A | chr15:63010514 | -0.098 | -0.121 | -0.179 | — |
| chr15_63010520_A_T | chr15:63010520 | -0.097 | -0.140 | -0.179 | — |
| chr15_63010533_G_T | chr15:63010533 | -0.078 | -0.096 | -0.179 | — |
| chr15_62995172_A_T | chr15:62995172 | -0.100 | -0.051 | -0.100 | <0.001% |
| chr15_63006342_C_T | chr15:63006342 | 0.006 | 0.027 | 0.175 | <0.001% |
| chr15_63006345_A_T | chr15:63006345 | 0.013 | 0.019 | 0.175 | 1.33% |
| chr15_63006797_G_A | chr15:63006797 | 0.031 | 0.065 | 0.174 | <0.001% |
| chr15_63006341_A_G | chr15:63006341 | 0.012 | 0.027 | 0.172 | 0.0019% |
| chr15_63010495_A_C | chr15:63010495 | 0.085 | 0.108 | 0.171 | — |
| chr15_63010508_T_G | chr15:63010508 | 0.067 | 0.154 | 0.168 | — |
| chr15_63006330_T_C | chr15:63006330 | -0.022 | -0.028 | -0.166 | 0.091% |
| chr15_63010493_T_A | chr15:63010493 | 0.094 | 0.099 | 0.071 | — |
| chr15_62967382_C_A | chr15:62967382 | 0.057 | 0.058 | 0.165 | 0.014% |
| chr15_63010541_A_T | chr15:63010541 | -0.085 | -0.084 | -0.162 | — |
| chr15_63010542_C_A | chr15:63010542 | -0.076 | -0.090 | -0.159 | — |
| chr15_63010528_T_A | chr15:63010528 | -0.086 | -0.114 | -0.141 | — |
| chr15_62995105_G_A | chr15:62995105 | -0.024 | -0.038 | -0.150 | <0.001% |
| chr15_63010539_T_G | chr15:63010539 | -0.081 | -0.093 | -0.147 | — |
| chr15_63010488_C_G | chr15:63010488 | -0.082 | -0.085 | -0.118 | — |
| chr15_63010541_A_G | chr15:63010541 | -0.082 | -0.085 | -0.109 | — |
| chr15_62967291_C_T | chr15:62967291 | -0.023 | -0.049 | -0.144 | 0.0033% |
| chr15_62967361_G_A | chr15:62967361 | -0.039 | -0.041 | -0.144 | 0.0059% |
| chr15_62995072_G_T | chr15:62995072 | -0.045 | -0.060 | -0.144 | <0.001% |
| chr15_62998171_A_G | chr15:62998171 | 0.060 | -0.025 | 0.144 | 26.0% |
| chr15_62998296_C_T | chr15:62998296 | -0.069 | -0.090 | -0.144 | 0.0039% |
| chr15_63006347_A_G | chr15:63006347 | 0.008 | 0.024 | 0.143 | 0.178% |
| chr15_62967398_G_T | chr15:62967398 | -0.030 | -0.020 | -0.141 | <0.001% |
| chr15_62967415_G_T | chr15:62967415 | -0.031 | -0.018 | -0.141 | 0.0013% |
| chr15_63010519_A_C | chr15:63010519 | 0.055 | 0.077 | 0.141 | — |
| chr15_63006326_C_T | chr15:63006326 | 0.014 | 0.022 | 0.140 | 0.0033% |
| chr15_63006336_C_T | chr15:63006336 | 0.009 | 0.010 | 0.140 | 24.2% |
| chr15_62967425_C_G | chr15:62967425 | -0.045 | -0.038 | -0.138 | 0.0020% |
| chr15_62998695_A_C | chr15:62998695 | -0.012 | -0.071 | -0.138 | 0.0013% |
| chr15_63010543_C_G | chr15:63010543 | -0.078 | -0.066 | -0.097 | — |
| chr15_62998395_T_C | chr15:62998395 | -0.077 | -0.079 | -0.094 | <0.001% |
| chr15_63010515_A_C | chr15:63010515 | 0.047 | 0.067 | 0.135 | — |
| chr15_62998658_C_T | chr15:62998658 | 0.042 | 0.082 | 0.132 | 0.0020% |
| chr15_62998701_A_T | chr15:62998701 | -0.022 | -0.071 | -0.132 | <0.001% |
| chr15_63006334_C_T | chr15:63006334 | 0.012 | 0.016 | 0.132 | 0.030% |
| chr15_63010430_A_G | chr15:63010430 | 0.047 | 0.044 | 0.132 | — |
| chr15_63006353_A_C | chr15:63006353 | 0.016 | 0.018 | 0.131 | 0.019% |
| chr15_63010494_G_C | chr15:63010494 | 0.074 | 0.103 | 0.109 | — |
| chr15_62967400_T_A | chr15:62967400 | -0.034 | -0.027 | -0.129 | <0.001% |
| chr15_62998728_A_G | chr15:62998728 | 0.027 | 0.058 | 0.129 | 0.0020% |
| chr15_63010492_T_G | chr15:63010492 | 0.070 | 0.098 | 0.129 | — |
| chr15_63010517_T_C | chr15:63010517 | 0.048 | 0.055 | 0.129 | — |
| chr15_62967181_C_T | chr15:62967181 | -0.032 | 0.016 | -0.126 | 0.0072% |
| chr15_62998702_C_T | chr15:62998702 | -0.013 | -0.056 | -0.126 | <0.001% |
| chr15_63010472_G_A | chr15:63010472 | -0.068 | -0.091 | -0.126 | <0.001% |
| chr15_63010495_A_T | chr15:63010495 | 0.072 | 0.088 | 0.085 | — |
| chr15_63010545_G_C | chr15:63010545 | 0.054 | 0.061 | 0.126 | <0.001% |
| chr15_62967360_C_T | chr15:62967360 | -0.037 | -0.018 | -0.124 | 0.0059% |
| chr15_63010498_A_T | chr15:63010498 | 0.070 | 0.085 | 0.115 | — |
| chr15_62998424_C_T | chr15:62998424 | -0.069 | -0.069 | -0.050 | 0.0059% |
| chr15_62995169_C_A | chr15:62995169 | -0.049 | -0.022 | -0.121 | <0.001% |
| chr15_63010496_G_T | chr15:63010496 | 0.068 | 0.089 | 0.056 | — |
| chr15_62998400_A_C | chr15:62998400 | -0.067 | -0.051 | 0.021 | 0.0059% |
| chr15_63006627_G_A | chr15:63006627 | 0.067 | 0.074 | 0.112 | 0.0033% |
| chr15_63010422_G_T | chr15:63010422 | -0.030 | -0.029 | -0.118 | — |
| chr15_63010488_C_A | chr15:63010488 | -0.062 | -0.063 | -0.118 | — |
| chr15_63010502_G_T | chr15:63010502 | -0.036 | -0.071 | -0.118 | — |
| chr15_63010525_T_A | chr15:63010525 | 0.063 | 0.114 | 0.118 | — |
| chr15_63010526_G_C | chr15:63010526 | -0.059 | -0.095 | -0.118 | — |
| chr15_63010530_A_C | chr15:63010530 | 0.062 | 0.081 | 0.118 | — |
| chr15_62967259_T_G | chr15:62967259 | 0.023 | 0.029 | 0.112 | 0.0013% |
| chr15_62967468_A_C | chr15:62967468 | 0.043 | 0.051 | 0.112 | 0.0020% |
| chr15_62995111_T_G | chr15:62995111 | 0.039 | 0.060 | 0.112 | <0.001% |
| chr15_63010511_C_G | chr15:63010511 | 0.059 | 0.082 | 0.112 | — |
| chr15_63010524_C_T | chr15:63010524 | -0.047 | -0.052 | -0.112 | — |
| chr15_63010514_C_G | chr15:63010514 | -0.062 | -0.072 | -0.082 | — |
| chr15_62967287_G_A | chr15:62967287 | 0.037 | 0.015 | 0.109 | <0.001% |
| chr15_62967318_C_T | chr15:62967318 | 0.025 | 0.027 | 0.109 | <0.001% |
| chr15_63006571_T_C | chr15:63006571 | -0.012 | -0.027 | -0.109 | <0.001% |
| chr15_63006693_G_A | chr15:63006693 | -0.036 | -0.052 | -0.109 | 0.0013% |
| chr15_63006709_T_G | chr15:63006709 | 0.050 | 0.058 | 0.109 | <0.001% |
| chr15_63010496_G_A | chr15:63010496 | -0.037 | -0.058 | -0.109 | — |
| chr15_63006280_A_C | chr15:63006280 | 0.059 | 0.085 | 0.107 | 0.0020% |
| chr15_63010498_A_C | chr15:63010498 | 0.061 | 0.055 | 0.103 | — |
| chr15_62967331_T_C | chr15:62967331 | -0.029 | -0.051 | -0.106 | 0.023% |
| chr15_62967396_G_A | chr15:62967396 | -0.032 | -0.032 | -0.106 | <0.001% |
| chr15_62998373_C_A | chr15:62998373 | -0.023 | -0.085 | -0.106 | 0.012% |
| chr15_62998423_C_T | chr15:62998423 | -0.057 | -0.076 | -0.106 | <0.001% |
| chr15_63010469_A_T | chr15:63010469 | 0.052 | 0.071 | 0.106 | — |
| chr15_63010537_A_G | chr15:63010537 | 0.057 | 0.056 | 0.106 | — |
| chr15_62967444_A_G | chr15:62967444 | 0.026 | 0.020 | 0.103 | 0.0039% |
| chr15_63006570_A_G | chr15:63006570 | 0.024 | 0.000 | 0.103 | 0.0039% |
| chr15_63010510_T_G | chr15:63010510 | 0.043 | 0.060 | 0.103 | — |
| chr15_63010533_G_C | chr15:63010533 | -0.058 | -0.085 | -0.082 | — |
| chr15_62998194_G_A | chr15:62998194 | 0.057 | 0.051 | 0.038 | 0.0020% |
| chr15_62967438_C_T | chr15:62967438 | 0.044 | 0.055 | 0.100 | 0.043% |
| chr15_62994951_T_C | chr15:62994951 | 0.027 | 0.024 | 0.100 | <0.001% |
| chr15_62998548_G_A | chr15:62998548 | 0.038 | 0.057 | 0.100 | 0.0026% |
| chr15_62998760_G_A | chr15:62998760 | -0.024 | -0.046 | -0.100 | <0.001% |
| chr15_63006624_G_C | chr15:63006624 | -0.041 | -0.079 | -0.100 | <0.001% |
| chr15_63010509_T_G | chr15:63010509 | 0.044 | 0.061 | 0.100 | — |
| chr15_62998475_G_A | chr15:62998475 | 0.056 | 0.071 | 0.085 | <0.001% |
| chr15_62967148_G_C | chr15:62967148 | 0.017 | 0.013 | 0.097 | <0.001% |
| chr15_62967206_C_T | chr15:62967206 | -0.023 | 0.009 | -0.097 | 0.0046% |
| chr15_62967474_T_G | chr15:62967474 | 0.035 | 0.043 | 0.097 | <0.001% |
| chr15_62995004_A_T | chr15:62995004 | -0.024 | -0.022 | -0.097 | <0.001% |
| chr15_62998605_C_T | chr15:62998605 | 0.055 | 0.082 | 0.062 | 0.0020% |
| chr15_63006762_C_A | chr15:63006762 | -0.004 | -0.023 | -0.097 | <0.001% |
| chr15_62998316_G_C | chr15:62998316 | -0.026 | -0.056 | -0.094 | <0.001% |
| chr15_63006621_A_G | chr15:63006621 | 0.024 | 0.014 | 0.094 | 0.0013% |
| chr15_63010515_A_G | chr15:63010515 | 0.029 | 0.046 | 0.094 | — |
| chr15_63010527_G_T | chr15:63010527 | -0.045 | -0.052 | -0.094 | — |
| chr15_63010546_G_C | chr15:63010546 | -0.053 | -0.086 | -0.041 | — |
| chr15_63010497_G_A | chr15:63010497 | 0.052 | 0.061 | 0.015 | — |
| chr15_62967446_C_A | chr15:62967446 | -0.018 | -0.029 | -0.091 | <0.001% |
| chr15_62995168_G_A | chr15:62995168 | -0.043 | -0.034 | -0.091 | <0.001% |
| chr15_62998193_C_T | chr15:62998193 | 0.052 | 0.033 | 0.018 | 0.0013% |
| chr15_63006356_T_C | chr15:63006356 | -0.012 | -0.011 | -0.091 | 1.59% |
| chr15_62998409_C_T | chr15:62998409 | -0.051 | -0.022 | -0.065 | <0.001% |
| chr15_62967158_C_A | chr15:62967158 | 0.022 | 0.006 | 0.088 | <0.001% |
| chr15_62967425_C_T | chr15:62967425 | -0.022 | -0.022 | -0.088 | 0.0033% |
| chr15_62998381_C_T | chr15:62998381 | -0.011 | -0.018 | -0.088 | 0.0092% |
| chr15_62998504_T_G | chr15:62998504 | 0.014 | 0.028 | 0.088 | 0.0026% |
| chr15_63010488_C_T | chr15:63010488 | -0.041 | -0.047 | -0.088 | — |
| chr15_63010522_T_C | chr15:63010522 | 0.037 | 0.029 | 0.088 | — |
| chr15_63010434_A_G | chr15:63010434 | -0.049 | -0.047 | -0.050 | — |
| chr15_62967155_C_T | chr15:62967155 | 0.025 | 0.016 | 0.085 | 0.0013% |
| chr15_62967385_G_C | chr15:62967385 | 0.035 | 0.033 | 0.085 | <0.001% |
| chr15_62998474_T_G | chr15:62998474 | -0.007 | 0.027 | 0.085 | <0.001% |
| chr15_63006315_A_G | chr15:63006315 | -0.001 | 0.009 | 0.085 | <0.001% |
| chr15_63010503_T_G | chr15:63010503 | -0.048 | -0.060 | -0.071 | — |
| chr15_63010525_T_G | chr15:63010525 | 0.029 | 0.056 | 0.085 | — |
| chr15_63010535_T_A | chr15:63010535 | -0.035 | -0.069 | -0.085 | — |
| chr15_62998608_C_A | chr15:62998608 | -0.013 | -0.028 | -0.082 | <0.001% |
| chr15_62998691_T_C | chr15:62998691 | 0.005 | 0.020 | 0.082 | 0.0013% |
| chr15_63006662_C_T | chr15:63006662 | -0.032 | -0.019 | -0.082 | 0.0066% |
| chr15_63010418_A_C | chr15:63010418 | 0.010 | -0.006 | 0.082 | — |
| chr15_63010462_A_G | chr15:63010462 | 0.034 | 0.049 | 0.082 | — |
| chr15_63010531_A_C | chr15:63010531 | 0.035 | 0.024 | 0.082 | — |
| chr15_63006316_C_T | chr15:63006316 | 0.013 | 0.015 | 0.081 | 0.0018% |
| chr15_63010458_G_C | chr15:63010458 | 0.046 | 0.062 | 0.071 | — |
| chr15_62967240_G_A | chr15:62967240 | 0.017 | 0.029 | 0.079 | <0.001% |
| chr15_62998509_G_C | chr15:62998509 | 0.034 | 0.028 | -0.079 | <0.001% |
| chr15_62998641_T_A | chr15:62998641 | -0.020 | -0.060 | -0.079 | 0.0046% |
| chr15_62998700_A_C | chr15:62998700 | -0.002 | -0.029 | -0.079 | 0.042% |
| chr15_63010468_G_A | chr15:63010468 | 0.045 | 0.076 | 0.038 | — |
| chr15_63010525_T_C | chr15:63010525 | 0.038 | 0.028 | 0.079 | — |
| chr15_63010527_G_A | chr15:63010527 | -0.045 | 0.006 | -0.041 | <0.001% |
| chr15_63010516_G_T | chr15:63010516 | -0.044 | -0.055 | -0.053 | — |
Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.