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VPS53

This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.

Scored variants near VPS53

chr17:408,667..814,839, gene body plus 100 kb. Showing the strongest 200 by effect size.

Variant	Position	PXR	FXR	AhR	AF
chr17_410128_A_C	chr17:410128	0.762	0.223	0.576	<0.001%
chr17_410348_G_C	chr17:410348	-0.200	-0.005	1.000	0.0079%
chr17_410368_C_G	chr17:410368	-0.546	-0.173	-0.024	<0.001%
chr17_410226_C_T	chr17:410226	0.106	0.010	0.918	0.0013%
chr17_419135_T_A	chr17:419135	0.454	1.000	0.894	<0.001%
chr17_419136_A_T	chr17:419136	0.408	0.820	0.788	0.0020%
chr17_410274_G_A	chr17:410274	-0.020	0.188	0.753	<0.001%
chr17_410368_C_T	chr17:410368	-0.424	-0.129	-0.012	0.0026%
chr17_410338_T_G	chr17:410338	-0.002	0.056	0.729	<0.001%
chr17_410134_G_A	chr17:410134	0.356	0.079	0.671	0.0059%
chr17_410458_G_C	chr17:410458	-0.359	-0.081	-0.318	<0.001%
chr17_410183_G_A	chr17:410183	-0.216	0.036	0.612	0.0020%
chr17_410324_C_G	chr17:410324	-0.321	0.084	0.612	<0.001%
chr17_410006_G_A	chr17:410006	0.166	0.033	0.576	0.0020%
chr17_410223_A_C	chr17:410223	0.243	0.231	0.576	<0.001%
chr17_410373_C_A	chr17:410373	0.027	0.135	0.576	0.0066%
chr17_411197_C_T	chr17:411197	0.323	0.265	0.188	0.0013%
chr17_410176_C_T	chr17:410176	-0.296	-0.076	0.235	0.0026%
chr17_419203_A_T	chr17:419203	-0.265	-0.569	-0.524	<0.001%
chr17_409910_C_T	chr17:409910	0.116	0.190	0.518	<0.001%
chr17_410458_G_A	chr17:410458	-0.290	-0.114	-0.247	<0.001%
chr17_410782_A_G	chr17:410782	-0.022	0.023	0.506	0.0026%
chr17_411946_G_C	chr17:411946	0.196	0.175	0.494	—
chr17_410094_C_A	chr17:410094	0.126	-0.058	0.482	<0.001%
chr17_409803_A_G	chr17:409803	0.077	0.124	0.471	0.0013%
chr17_409861_C_T	chr17:409861	-0.125	-0.109	-0.471	0.0053%
chr17_419269_A_G	chr17:419269	-0.265	-0.543	-0.432	0.0020%
chr17_410179_A_T	chr17:410179	-0.250	-0.119	0.012	<0.001%
chr17_419274_A_G	chr17:419274	-0.231	-0.454	-0.429	0.0085%
chr17_410470_C_T	chr17:410470	-0.241	-0.147	-0.400	<0.001%
chr17_410176_C_A	chr17:410176	-0.233	-0.038	0.082	<0.001%
chr17_410468_G_A	chr17:410468	-0.098	-0.071	-0.412	0.0013%
chr17_419267_A_G	chr17:419267	-0.227	-0.457	-0.341	<0.001%
chr17_410482_G_A	chr17:410482	0.173	0.096	0.400	<0.001%
chr17_419114_C_A	chr17:419114	0.225	0.396	0.374	<0.001%
chr17_419183_G_A	chr17:419183	-0.162	-0.393	-0.391	<0.001%
chr17_410049_G_A	chr17:410049	0.047	0.036	0.388	<0.001%
chr17_410111_G_T	chr17:410111	0.220	0.033	0.047	<0.001%
chr17_409949_A_G	chr17:409949	0.030	0.063	0.376	<0.001%
chr17_410177_G_A	chr17:410177	-0.213	-0.069	0.106	0.0013%
chr17_410359_C_T	chr17:410359	0.195	0.228	0.376	0.0072%
chr17_410542_G_T	chr17:410542	0.191	0.048	0.376	<0.001%
chr17_419136_A_G	chr17:419136	0.143	0.305	0.376	<0.001%
chr17_410541_G_A	chr17:410541	0.205	0.025	0.247	<0.001%
chr17_409960_T_C	chr17:409960	0.130	0.074	0.353	0.029%
chr17_419204_C_T	chr17:419204	-0.176	-0.426	-0.353	<0.001%
chr17_410388_C_T	chr17:410388	0.195	0.061	0.224	0.0020%
chr17_410351_G_T	chr17:410351	-0.057	0.053	0.341	34.7%
chr17_410705_A_C	chr17:410705	0.166	0.135	0.341	0.0020%
chr17_410749_G_C	chr17:410749	0.111	0.137	0.341	0.0046%
chr17_411192_C_T	chr17:411192	0.191	0.206	0.053	<0.001%
chr17_419181_G_A	chr17:419181	-0.144	-0.360	-0.332	<0.001%
chr17_409930_T_A	chr17:409930	0.121	0.104	0.329	<0.001%
chr17_410042_C_T	chr17:410042	0.173	0.089	0.329	<0.001%
chr17_410403_G_C	chr17:410403	0.110	0.048	0.329	0.0026%
chr17_410019_T_G	chr17:410019	0.183	0.135	0.294	0.0013%
chr17_410043_G_T	chr17:410043	0.180	0.145	0.294	<0.001%
chr17_410425_G_A	chr17:410425	0.055	0.074	0.318	<0.001%
chr17_419171_G_T	chr17:419171	0.125	0.211	0.318	0.0053%
chr17_410268_G_A	chr17:410268	-0.175	0.107	0.200	<0.001%
chr17_410000_G_A	chr17:410000	0.070	0.069	0.306	0.0020%
chr17_410321_A_T	chr17:410321	-0.045	-0.013	0.306	0.0039%
chr17_410709_A_C	chr17:410709	-0.068	-0.051	-0.306	<0.001%
chr17_410000_G_T	chr17:410000	0.170	0.147	0.282	<0.001%
chr17_410471_G_A	chr17:410471	-0.170	-0.079	-0.271	0.0079%
chr17_419117_T_G	chr17:419117	0.167	0.284	0.212	0.0014%
chr17_410369_G_T	chr17:410369	0.113	0.081	0.294	0.0039%
chr17_410153_T_C	chr17:410153	-0.163	-0.135	-0.176	0.0020%
chr17_410048_C_T	chr17:410048	0.023	0.008	0.282	0.0026%
chr17_410302_G_A	chr17:410302	-0.005	-0.104	-0.282	0.0020%
chr17_410357_C_G	chr17:410357	-0.028	-0.089	-0.282	<0.001%
chr17_410436_C_T	chr17:410436	0.067	0.084	0.282	0.133%
chr17_410444_C_T	chr17:410444	-0.067	0.025	0.282	<0.001%
chr17_410559_A_G	chr17:410559	0.027	0.038	0.282	0.0026%
chr17_419294_G_A	chr17:419294	0.160	0.327	0.274	<0.001%
chr17_409981_C_T	chr17:409981	-0.156	-0.046	-0.188	<0.001%
chr17_410301_C_T	chr17:410301	0.013	-0.091	-0.271	<0.001%
chr17_410373_C_G	chr17:410373	0.131	0.122	0.271	0.0026%
chr17_419188_A_C	chr17:419188	-0.114	-0.330	-0.271	0.0013%
chr17_410332_G_T	chr17:410332	-0.151	-0.038	-0.059	0.0020%
chr17_410199_T_G	chr17:410199	0.150	0.005	0.247	0.080%
chr17_410433_T_G	chr17:410433	-0.150	-0.081	-0.106	<0.001%
chr17_410243_C_T	chr17:410243	-0.148	-0.122	-0.224	0.013%
chr17_409953_G_A	chr17:409953	0.013	0.079	0.259	0.0020%
chr17_410369_G_C	chr17:410369	0.115	0.074	0.259	<0.001%
chr17_410386_G_A	chr17:410386	-0.047	0.023	0.259	<0.001%
chr17_410457_C_T	chr17:410457	0.075	0.048	0.259	0.095%
chr17_411965_G_C	chr17:411965	0.107	0.041	0.259	—
chr17_410389_G_A	chr17:410389	-0.145	-0.124	-0.176	0.0020%
chr17_410514_C_T	chr17:410514	-0.143	-0.043	-0.176	<0.001%
chr17_409887_G_A	chr17:409887	-0.085	-0.107	-0.247	0.0013%
chr17_410043_G_A	chr17:410043	0.103	0.102	0.247	<0.001%
chr17_410190_G_C	chr17:410190	-0.140	-0.091	-0.176	<0.001%
chr17_410297_C_A	chr17:410297	-0.078	0.063	0.247	<0.001%
chr17_410426_G_T	chr17:410426	0.097	0.038	0.247	<0.001%
chr17_410507_G_A	chr17:410507	-0.140	-0.028	-0.118	0.011%
chr17_410516_G_A	chr17:410516	0.055	0.056	0.247	<0.001%
chr17_411039_G_C	chr17:411039	0.037	-0.094	0.247	0.0013%
chr17_410243_C_G	chr17:410243	-0.136	-0.142	-0.188	<0.001%
chr17_419221_C_T	chr17:419221	0.096	0.246	0.241	<0.001%
chr17_410374_G_C	chr17:410374	-0.135	-0.015	-0.024	0.0013%
chr17_409864_G_C	chr17:409864	0.116	0.046	0.235	<0.001%
chr17_409958_C_A	chr17:409958	-0.110	0.018	-0.235	<0.001%
chr17_410088_C_T	chr17:410088	0.133	-0.061	0.188	0.0013%
chr17_410117_C_T	chr17:410117	-0.133	-0.030	-0.176	0.0013%
chr17_411971_T_A	chr17:411971	0.073	0.033	0.235	—
chr17_409980_G_A	chr17:409980	-0.130	-0.015	-0.129	0.097%
chr17_410412_G_A	chr17:410412	-0.130	0.015	0.141	<0.001%
chr17_411031_A_G	chr17:411031	0.024	-0.091	0.229	<0.001%
chr17_419305_T_G	chr17:419305	-0.106	-0.294	-0.229	<0.001%
chr17_410414_G_C	chr17:410414	-0.128	0.094	0.082	0.0020%
chr17_409810_T_G	chr17:409810	0.025	0.038	0.224	0.011%
chr17_409894_A_G	chr17:409894	0.023	0.071	0.224	<0.001%
chr17_410121_C_G	chr17:410121	-0.126	-0.030	-0.059	0.0013%
chr17_410367_G_T	chr17:410367	0.085	0.076	0.224	<0.001%
chr17_410420_G_A	chr17:410420	0.097	0.025	0.224	0.0013%
chr17_410460_C_T	chr17:410460	0.032	0.036	0.224	0.026%
chr17_410632_C_G	chr17:410632	0.126	0.030	0.129	<0.001%
chr17_410673_G_A	chr17:410673	0.000	-0.023	-0.224	0.0020%
chr17_419218_A_G	chr17:419218	0.109	0.188	0.224	<0.001%
chr17_409987_C_A	chr17:409987	-0.123	-0.079	-0.129	0.0013%
chr17_419337_C_T	chr17:419337	-0.105	-0.201	-0.218	0.0020%
chr17_409980_G_C	chr17:409980	-0.120	0.020	-0.129	0.0013%
chr17_410228_C_T	chr17:410228	0.048	0.046	0.212	0.0020%
chr17_410260_G_A	chr17:410260	0.030	-0.076	-0.212	0.0040%
chr17_410308_G_A	chr17:410308	-0.023	-0.076	-0.212	<0.001%
chr17_410361_G_A	chr17:410361	-0.101	-0.046	-0.212	<0.001%
chr17_410367_G_C	chr17:410367	0.111	0.056	0.212	<0.001%
chr17_410373_C_T	chr17:410373	-0.028	0.074	0.212	<0.001%
chr17_410391_T_C	chr17:410391	-0.017	-0.091	-0.212	34.7%
chr17_410515_G_C	chr17:410515	0.116	0.096	0.212	<0.001%
chr17_410558_C_T	chr17:410558	0.108	0.030	0.212	0.0013%
chr17_410648_T_G	chr17:410648	-0.118	0.081	0.129	0.018%
chr17_409989_G_A	chr17:409989	-0.037	-0.051	-0.200	0.0072%
chr17_410514_C_A	chr17:410514	-0.113	-0.030	-0.200	<0.001%
chr17_410820_G_C	chr17:410820	0.007	-0.043	-0.200	<0.001%
chr17_419305_T_A	chr17:419305	-0.080	-0.236	-0.200	0.0013%
chr17_422645_T_C	chr17:422645	0.012	0.038	0.200	0.0020%
chr17_410357_C_A	chr17:410357	-0.111	-0.089	-0.188	<0.001%
chr17_410396_C_T	chr17:410396	-0.111	-0.010	-0.141	0.0013%
chr17_419357_G_T	chr17:419357	0.111	0.165	0.038	0.0085%
chr17_410486_C_G	chr17:410486	0.110	0.079	0.141	0.0026%
chr17_410005_C_T	chr17:410005	-0.090	-0.076	0.188	<0.001%
chr17_410024_A_G	chr17:410024	0.040	0.058	-0.188	0.0013%
chr17_410219_A_G	chr17:410219	-0.042	-0.084	-0.188	0.0039%
chr17_410448_C_T	chr17:410448	-0.035	0.003	0.188	0.232%
chr17_410495_C_A	chr17:410495	-0.002	-0.041	-0.188	<0.001%
chr17_410794_A_G	chr17:410794	0.010	0.008	0.188	<0.001%
chr17_410825_G_A	chr17:410825	-0.005	-0.018	-0.188	0.0013%
chr17_411082_C_G	chr17:411082	-0.007	0.063	0.188	0.0013%
chr17_411971_T_C	chr17:411971	0.064	0.033	0.188	—
chr17_410326_C_T	chr17:410326	-0.105	-0.020	-0.047	<0.001%
chr17_410508_G_A	chr17:410508	-0.105	-0.043	-0.047	16.1%
chr17_410115_C_T	chr17:410115	-0.103	0.000	-0.118	0.0013%
chr17_410372_C_T	chr17:410372	0.103	0.076	0.118	<0.001%
chr17_409941_C_T	chr17:409941	-0.067	-0.020	-0.176	<0.001%
chr17_409973_G_T	chr17:409973	0.077	0.109	0.176	<0.001%
chr17_410031_C_T	chr17:410031	-0.030	-0.038	-0.176	<0.001%
chr17_410291_G_A	chr17:410291	0.018	0.053	0.176	<0.001%
chr17_410297_C_G	chr17:410297	0.032	0.048	0.176	0.0013%
chr17_419131_G_T	chr17:419131	-0.010	-0.015	-0.176	0.040%
chr17_419257_T_C	chr17:419257	0.024	0.033	0.176	<0.001%
chr17_411204_C_T	chr17:411204	-0.098	-0.103	-0.106	<0.001%
chr17_410200_C_A	chr17:410200	-0.097	-0.086	-0.071	<0.001%
chr17_419167_G_A	chr17:419167	-0.077	-0.173	-0.171	0.0013%
chr17_419315_C_G	chr17:419315	-0.092	-0.175	-0.171	<0.001%
chr17_419327_A_G	chr17:419327	-0.087	-0.241	-0.171	<0.001%
chr17_409840_C_T	chr17:409840	-0.013	0.015	-0.165	<0.001%
chr17_410023_G_T	chr17:410023	0.030	0.074	0.165	0.0086%
chr17_410189_C_A	chr17:410189	-0.093	-0.038	-0.035	0.0020%
chr17_410206_C_A	chr17:410206	0.053	0.000	0.165	0.0013%
chr17_410231_A_G	chr17:410231	0.077	0.023	0.165	0.0033%
chr17_410243_C_A	chr17:410243	-0.030	-0.008	-0.165	0.0013%
chr17_410250_G_A	chr17:410250	0.068	0.091	0.165	<0.001%
chr17_410400_A_C	chr17:410400	0.027	-0.015	-0.165	<0.001%
chr17_410409_C_T	chr17:410409	-0.050	0.013	0.165	0.0013%
chr17_410558_C_G	chr17:410558	0.078	0.028	0.165	0.0039%
chr17_410633_T_A	chr17:410633	-0.002	0.117	0.165	0.0020%
chr17_410822_G_A	chr17:410822	0.023	-0.003	-0.165	<0.001%
chr17_410844_G_A	chr17:410844	0.000	-0.025	-0.165	<0.001%
chr17_409920_T_C	chr17:409920	0.090	0.010	0.106	<0.001%
chr17_419210_T_G	chr17:419210	-0.060	-0.160	-0.159	0.0013%
chr17_410554_C_T	chr17:410554	0.088	-0.036	0.012	0.0046%
chr17_419242_C_A	chr17:419242	0.087	-0.119	-0.153	0.0099%
chr17_409819_C_T	chr17:409819	0.000	-0.008	-0.153	<0.001%
chr17_409875_T_C	chr17:409875	0.007	0.008	0.153	0.0013%
chr17_409968_C_T	chr17:409968	-0.070	-0.033	-0.153	<0.001%
chr17_410142_G_A	chr17:410142	-0.043	-0.028	-0.153	<0.001%
chr17_410155_C_T	chr17:410155	-0.037	-0.112	-0.153	0.0020%
chr17_410265_C_T	chr17:410265	0.087	0.008	0.094	0.029%
chr17_410293_G_A	chr17:410293	0.018	0.084	0.153	<0.001%
chr17_410321_A_C	chr17:410321	0.018	-0.005	0.153	<0.001%
chr17_410368_C_A	chr17:410368	-0.012	0.038	0.153	0.028%
chr17_410502_G_A	chr17:410502	0.005	0.020	0.153	<0.001%
chr17_411948_A_C	chr17:411948	0.086	0.091	0.065	—
chr17_410026_G_A	chr17:410026	0.083	0.033	0.059	<0.001%
chr17_410089_G_A	chr17:410089	-0.083	-0.114	-0.035	0.0013%
chr17_410407_C_T	chr17:410407	-0.082	-0.033	-0.059	0.246%
chr17_411202_G_A	chr17:411202	-0.082	-0.148	-0.071	<0.001%
chr17_419166_T_G	chr17:419166	0.066	0.173	0.144	<0.001%

Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.