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LINC01342
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near LINC01342
chr1:1,037,016..1,244,054, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR ▾ | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr1_1059615_T_A | chr1:1059615 | -31,584 | -2,352 | -30,464 | 6.8e-6 |
| chr1_1038127_C_G | chr1:1038127 | -28,064 | -15,840 | -31,232 | 1.3e-5 |
| chr1_1038126_A_G | chr1:1038126 | -23,808 | -13,152 | -25,344 | 2.0e-5 |
| chr1_1038100_G_A | chr1:1038100 | -18,496 | -10,624 | -19,712 | 6.6e-6 |
| chr1_1059632_G_T | chr1:1059632 | -17,920 | 2,544 | -7,424 | 3.0e-4 |
| chr1_1038134_C_G | chr1:1038134 | -17,824 | -9,312 | -19,456 | 6.6e-6 |
| chr1_1059602_C_T | chr1:1059602 | -16,800 | -656 | -9,984 | 6.6e-6 |
| chr1_1038064_G_A | chr1:1038064 | 16,384 | 8,096 | 12,800 | 6.6e-6 |
| chr1_1038182_C_A | chr1:1038182 | -16,320 | -8,352 | -14,592 | 1.3e-5 |
| chr1_1059614_C_A | chr1:1059614 | -16,192 | -1,808 | -19,456 | 1.3e-5 |
| chr1_1058486_T_A | chr1:1058486 | -15,584 | -9,600 | -19,328 | 6.6e-6 |
| chr1_1058247_G_C | chr1:1058247 | 14,496 | 13,792 | 18,176 | 3.9e-5 |
| chr1_1038119_C_T | chr1:1038119 | -14,336 | -9,568 | -13,824 | 6.6e-6 |
| chr1_1059609_G_A | chr1:1059609 | -14,240 | -720 | -14,336 | 6.6e-6 |
| chr1_1058523_A_G | chr1:1058523 | -13,664 | -8,448 | -15,616 | 1.3e-5 |
| chr1_1059638_C_G | chr1:1059638 | -13,632 | -320 | -6,144 | 1.3e-5 |
| chr1_1058522_C_T | chr1:1058522 | -13,536 | -9,216 | -13,824 | 6.6e-6 |
| chr1_1058450_C_A | chr1:1058450 | 13,408 | 4,992 | 11,008 | 6.6e-6 |
| chr1_1037801_C_T | chr1:1037801 | -13,216 | -4,240 | -14,976 | 6.6e-6 |
| chr1_1038061_G_C | chr1:1038061 | 13,120 | 6,688 | 10,240 | 6.6e-6 |
| chr1_1038179_C_A | chr1:1038179 | -13,056 | -7,360 | -12,800 | 6.6e-6 |
| chr1_1038103_G_A | chr1:1038103 | -12,992 | -7,840 | -13,056 | 6.6e-6 |
| chr1_1058485_G_A | chr1:1058485 | -12,672 | -7,952 | -19,200 | 1.3e-5 |
| chr1_1059635_T_A | chr1:1059635 | -11,616 | 176 | -4,608 | 6.6e-6 |
| chr1_1059393_C_T | chr1:1059393 | 11,584 | 2,752 | 32,768 | 6.6e-6 |
| chr1_1038136_G_T | chr1:1038136 | -11,456 | -5,504 | -9,472 | 6.6e-6 |
| chr1_1058484_C_A | chr1:1058484 | -11,136 | -5,280 | -13,568 | 2.6e-5 |
| chr1_1058531_G_A | chr1:1058531 | 10,560 | 7,120 | 9,216 | 6.6e-6 |
| chr1_1038066_G_A | chr1:1038066 | 10,432 | 5,024 | 9,216 | 6.6e-6 |
| chr1_1058424_A_G | chr1:1058424 | -10,304 | -5,264 | -14,848 | 2.6e-5 |
| chr1_1038104_G_A | chr1:1038104 | -10,048 | -5,664 | -8,704 | 6.6e-6 |
| chr1_1037806_C_T | chr1:1037806 | 9,856 | 2,016 | 6,656 | 3.9e-5 |
| chr1_1037816_C_T | chr1:1037816 | -9,760 | -3,600 | -10,112 | 6.6e-6 |
| chr1_1059657_G_A | chr1:1059657 | -9,728 | 1,408 | 9,216 | 2.0e-5 |
| chr1_1037792_G_C | chr1:1037792 | -9,664 | -3,792 | -11,392 | 6.6e-6 |
| chr1_1059674_G_T | chr1:1059674 | -9,344 | -160 | -6,912 | 1.9e-4 |
| chr1_1058513_G_C | chr1:1058513 | -9,088 | -4,944 | -8,960 | 6.6e-6 |
| chr1_1059690_C_G | chr1:1059690 | -8,896 | -416 | 2,048 | 6.6e-6 |
| chr1_1038016_G_T | chr1:1038016 | 8,512 | 3,232 | 7,936 | 6.6e-6 |
| chr1_1059651_C_G | chr1:1059651 | -8,448 | -688 | -6,144 | 6.6e-6 |
| chr1_1059591_G_C | chr1:1059591 | -8,128 | -784 | -6,144 | 1.3e-5 |
| chr1_1037792_G_T | chr1:1037792 | -8,096 | -2,960 | -10,624 | 6.6e-6 |
| chr1_1037890_C_T | chr1:1037890 | 8,000 | 2,944 | 4,352 | 6.6e-6 |
| chr1_1059397_C_A | chr1:1059397 | 7,936 | 1,648 | 21,504 | 1.4e-4 |
| chr1_1058403_C_T | chr1:1058403 | -7,936 | -4,208 | -12,416 | 6.6e-6 |
| chr1_1058500_G_A | chr1:1058500 | -7,712 | -5,440 | -7,168 | 2.0e-5 |
| chr1_1038047_C_T | chr1:1038047 | -7,488 | -3,840 | -9,472 | 6.6e-6 |
| chr1_1038081_G_A | chr1:1038081 | -7,488 | -3,968 | -6,400 | 6.6e-6 |
| chr1_1059671_C_G | chr1:1059671 | -7,232 | -96 | -4,608 | 3.4e-5 |
| chr1_1059384_C_G | chr1:1059384 | 6,976 | 1,232 | 14,080 | 6.6e-6 |
| chr1_1059413_C_A | chr1:1059413 | 6,912 | 2,816 | 26,880 | 1.3e-5 |
| chr1_1058483_G_C | chr1:1058483 | -6,912 | -4,960 | -10,752 | 8.5e-5 |
| chr1_1037804_A_G | chr1:1037804 | 6,848 | 2,048 | 6,656 | 8.6e-5 |
| chr1_1038061_G_A | chr1:1038061 | -6,784 | -3,520 | -7,680 | 2.6e-5 |
| chr1_1059660_T_A | chr1:1059660 | -6,592 | -880 | -6,144 | 6.6e-6 |
| chr1_1058551_A_T | chr1:1058551 | -6,400 | -3,248 | -7,936 | 2.2e-4 |
| chr1_1058574_G_C | chr1:1058574 | 6,176 | 4,096 | 7,424 | 8.5e-5 |
| chr1_1037799_G_A | chr1:1037799 | -6,144 | -2,128 | -6,912 | 6.6e-6 |
| chr1_1037800_G_T | chr1:1037800 | -5,952 | -2,016 | -8,192 | 6.6e-6 |
| chr1_1038169_G_T | chr1:1038169 | 5,952 | 2,848 | 6,144 | 6.6e-6 |
| chr1_1058418_G_A | chr1:1058418 | 5,952 | 2,272 | 6,144 | 2.0e-3 |
| chr1_1058483_G_A | chr1:1058483 | -5,920 | -4,000 | -10,240 | 2.6e-5 |
| chr1_1037859_C_T | chr1:1037859 | 5,760 | 2,048 | 2,816 | 6.6e-6 |
| chr1_1059395_C_T | chr1:1059395 | 5,696 | 1,728 | 23,552 | 3.3e-5 |
| chr1_1059610_G_A | chr1:1059610 | -5,632 | -512 | -12,544 | 6.6e-6 |
| chr1_1038139_C_T | chr1:1038139 | 5,632 | 1,792 | 7,168 | 1.4e-4 |
| chr1_1038216_G_C | chr1:1038216 | -5,632 | -2,976 | -5,888 | 3.3e-5 |
| chr1_1037882_G_T | chr1:1037882 | 5,632 | 1,792 | 3,840 | 2.0e-5 |
| chr1_1058382_G_A | chr1:1058382 | -5,568 | -3,088 | -6,016 | 6.6e-6 |
| chr1_1037838_C_T | chr1:1037838 | -5,504 | -2,416 | -5,632 | 2.6e-5 |
| chr1_1059314_C_G | chr1:1059314 | 5,440 | 912 | 14,592 | 3.3e-5 |
| chr1_1059639_C_A | chr1:1059639 | -5,376 | -128 | -768 | 8.3e-5 |
| chr1_1038217_G_T | chr1:1038217 | -5,312 | -2,368 | -4,864 | 6.6e-6 |
| chr1_1058425_T_C | chr1:1058425 | -5,216 | -400 | -8,192 | 5.9e-5 |
| chr1_1058396_C_T | chr1:1058396 | 5,184 | 5,824 | -768 | 9.6e-4 |
| chr1_1038020_G_A | chr1:1038020 | -5,056 | -2,272 | 256 | 6.6e-6 |
| chr1_1059638_C_A | chr1:1059638 | -5,056 | 592 | 2,816 | 2.6e-5 |
| chr1_1058525_A_G | chr1:1058525 | -4,896 | -3,856 | -1,024 | 2.0e-5 |
| chr1_1037770_G_A | chr1:1037770 | -4,864 | -1,520 | -4,864 | 6.6e-6 |
| chr1_1037865_G_A | chr1:1037865 | -4,800 | -1,872 | -7,424 | 6.6e-6 |
| chr1_1058577_C_A | chr1:1058577 | -4,512 | -1,920 | -9,216 | 1.3e-5 |
| chr1_1058479_G_A | chr1:1058479 | -4,448 | -3,248 | -8,320 | 5.8e-2 |
| chr1_1038087_A_G | chr1:1038087 | -4,224 | -928 | -5,120 | 6.6e-6 |
| chr1_1059381_G_A | chr1:1059381 | -4,000 | -328 | -6,400 | 5.9e-5 |
| chr1_1058430_C_T | chr1:1058430 | -3,840 | -2,688 | -7,552 | 1.1e-4 |
| chr1_1059655_G_A | chr1:1059655 | 3,776 | 544 | 6,656 | 6.6e-6 |
| chr1_1059414_C_G | chr1:1059414 | 3,680 | 992 | 7,680 | 2.6e-5 |
| chr1_1058415_T_G | chr1:1058415 | -3,616 | -3,376 | -8,576 | 6.6e-6 |
| chr1_1058545_G_A | chr1:1058545 | -3,584 | -1,664 | -5,888 | 2.0e-5 |
| chr1_1059318_G_A | chr1:1059318 | 3,392 | 384 | 8,448 | 1.3e-5 |
| chr1_1058393_A_C | chr1:1058393 | 3,392 | 816 | 5,888 | 2.0e-5 |
| chr1_1059424_G_C | chr1:1059424 | -3,264 | -688 | -8,704 | 1.3e-5 |
| chr1_1059614_C_T | chr1:1059614 | -3,200 | 208 | -10,240 | 6.7e-6 |
| chr1_1059480_A_G | chr1:1059480 | -3,200 | -448 | -7,424 | 6.6e-6 |
| chr1_1059413_C_T | chr1:1059413 | 3,136 | 2,000 | 16,640 | 4.2e-3 |
| chr1_1059429_G_A | chr1:1059429 | -3,136 | -392 | -5,376 | 6.6e-6 |
| chr1_1058969_C_G | chr1:1058969 | 3,104 | 512 | 10,240 | — |
| chr1_1038283_T_C | chr1:1038283 | 3,008 | 1,504 | 5,632 | 1.6e-4 |
| chr1_1038025_G_A | chr1:1038025 | 3,008 | 2,336 | 4,864 | 6.6e-6 |
| chr1_1059391_G_T | chr1:1059391 | 2,496 | 144 | 5,376 | 2.0e-5 |
| chr1_1059112_G_C | chr1:1059112 | -2,496 | 112 | -5,120 | 1.3e-5 |
| chr1_1038254_A_G | chr1:1038254 | -2,432 | -1,504 | -5,120 | 6.6e-6 |
| chr1_1058753_G_T | chr1:1058753 | 2,304 | 1,120 | 14,592 | 6.6e-6 |
| chr1_1058953_A_C | chr1:1058953 | 2,304 | 496 | 7,424 | — |
| chr1_1059529_C_A | chr1:1059529 | 2,176 | 304 | 6,656 | 6.6e-6 |
| chr1_1058600_C_T | chr1:1058600 | -2,112 | -1,408 | -4,864 | 1.3e-5 |
| chr1_1058950_C_G | chr1:1058950 | 2,016 | 208 | 6,912 | — |
| chr1_1058950_C_A | chr1:1058950 | 2,016 | 128 | 5,376 | — |
| chr1_1058756_T_G | chr1:1058756 | -1,984 | -1,232 | -10,752 | 4.9e-5 |
| chr1_1058972_C_G | chr1:1058972 | 1,984 | 32 | 6,400 | — |
| chr1_1058888_A_G | chr1:1058888 | -1,952 | -1,296 | -11,008 | — |
| chr1_1059139_G_C | chr1:1059139 | 1,920 | 336 | 5,120 | 6.6e-6 |
| chr1_1058754_G_A | chr1:1058754 | 1,888 | 944 | 10,752 | 1.3e-5 |
| chr1_1058930_G_C | chr1:1058930 | 1,856 | -1,456 | 17,664 | — |
| chr1_1059184_G_T | chr1:1059184 | -1,856 | -96 | -6,656 | 6.6e-6 |
| chr1_1058176_C_T | chr1:1058176 | -1,856 | -992 | -5,376 | 6.6e-6 |
| chr1_1058758_A_G | chr1:1058758 | -1,824 | -1,968 | -10,368 | 6.6e-6 |
| chr1_1058905_A_G | chr1:1058905 | -1,824 | -1,168 | -9,728 | — |
| chr1_1058474_G_A | chr1:1058474 | 1,824 | -2,256 | -5,888 | 6.6e-6 |
| chr1_1058931_G_C | chr1:1058931 | 1,792 | 80 | 8,448 | — |
| chr1_1059327_G_T | chr1:1059327 | -1,792 | 0 | -5,632 | 3.9e-5 |
| chr1_1058972_C_A | chr1:1058972 | 1,792 | 176 | 5,376 | — |
| chr1_1058969_C_T | chr1:1058969 | 1,760 | 256 | 5,120 | — |
| chr1_1059509_C_A | chr1:1059509 | -1,728 | 288 | 5,632 | 6.6e-6 |
| chr1_1058954_G_C | chr1:1058954 | 1,728 | 288 | 5,120 | 6.6e-6 |
| chr1_1058910_C_G | chr1:1058910 | -1,696 | -928 | -6,144 | — |
| chr1_1058893_T_G | chr1:1058893 | -1,600 | -960 | -8,704 | — |
| chr1_1059268_C_G | chr1:1059268 | -1,600 | -272 | -5,120 | 6.6e-6 |
| chr1_1058954_G_A | chr1:1058954 | 1,536 | 416 | 5,120 | — |
| chr1_1058882_G_A | chr1:1058882 | 1,504 | 928 | 6,656 | — |
| chr1_1058753_G_A | chr1:1058753 | 1,472 | 1,056 | 14,080 | 6.6e-6 |
| chr1_1058752_G_A | chr1:1058752 | 1,472 | 960 | 13,312 | 1.3e-5 |
| chr1_1058971_C_A | chr1:1058971 | 1,472 | -96 | 6,144 | — |
| chr1_1058972_C_T | chr1:1058972 | 1,472 | 32 | 5,376 | — |
| chr1_1058869_A_G | chr1:1058869 | -1,440 | -1,184 | -11,264 | — |
| chr1_1059520_C_T | chr1:1059520 | 1,408 | 576 | 11,520 | 2.6e-5 |
| chr1_1059351_G_A | chr1:1059351 | 1,408 | 336 | 6,400 | 2.0e-5 |
| chr1_1058997_A_G | chr1:1058997 | -1,408 | -176 | -5,376 | 6.6e-6 |
| chr1_1058882_G_C | chr1:1058882 | 1,376 | 800 | 7,936 | — |
| chr1_1058907_A_G | chr1:1058907 | -1,376 | -768 | -6,400 | — |
| chr1_1058930_G_T | chr1:1058930 | 1,312 | -768 | 8,960 | — |
| chr1_1058891_G_C | chr1:1058891 | 1,280 | 640 | 8,448 | — |
| chr1_1058971_C_G | chr1:1058971 | 1,280 | -80 | 6,912 | — |
| chr1_1058994_A_G | chr1:1058994 | -1,280 | -320 | -6,400 | — |
| chr1_1058982_A_G | chr1:1058982 | -1,280 | -240 | -5,376 | — |
| chr1_1058581_G_T | chr1:1058581 | -1,280 | -320 | -5,120 | 6.6e-6 |
| chr1_1058890_G_C | chr1:1058890 | 1,248 | 992 | 8,192 | — |
| chr1_1058890_G_T | chr1:1058890 | 1,248 | 992 | 6,144 | — |
| chr1_1058882_G_T | chr1:1058882 | 1,216 | 880 | 6,144 | — |
| chr1_1059534_G_A | chr1:1059534 | -1,216 | 464 | 6,144 | 6.6e-6 |
| chr1_1058886_C_G | chr1:1058886 | -1,216 | -800 | -5,888 | — |
| chr1_1058891_G_T | chr1:1058891 | 1,184 | 816 | 6,144 | 5.6e-3 |
| chr1_1059516_G_A | chr1:1059516 | -1,152 | 576 | 9,216 | 5.3e-5 |
| chr1_1058900_C_G | chr1:1058900 | -1,152 | -640 | -5,888 | — |
| chr1_1058362_C_G | chr1:1058362 | -1,120 | 4,752 | 22,784 | 1.3e-5 |
| chr1_1058874_G_C | chr1:1058874 | 1,120 | 784 | 7,168 | — |
| chr1_1058891_G_A | chr1:1058891 | 1,120 | 720 | 5,376 | — |
| chr1_1058755_G_T | chr1:1058755 | 1,088 | 640 | 5,888 | 7.9e-5 |
| chr1_1058881_G_C | chr1:1058881 | 1,056 | 672 | 7,424 | — |
| chr1_1058871_T_G | chr1:1058871 | -1,056 | -496 | -5,888 | — |
| chr1_1058874_G_A | chr1:1058874 | 1,056 | 752 | 5,632 | — |
| chr1_1058953_A_G | chr1:1058953 | 1,056 | 64 | 5,376 | — |
| chr1_1058752_G_T | chr1:1058752 | 1,024 | 896 | 11,520 | 1.3e-5 |
| chr1_1058952_T_G | chr1:1058952 | 1,024 | 288 | 5,888 | — |
| chr1_1058959_G_T | chr1:1058959 | -1,024 | 208 | -5,120 | — |
| chr1_1059558_G_A | chr1:1059558 | -960 | 1,248 | 11,008 | 1.3e-5 |
| chr1_1058881_G_A | chr1:1058881 | 960 | 704 | 5,376 | — |
| chr1_1058889_G_C | chr1:1058889 | 960 | 656 | 5,376 | — |
| chr1_1058885_C_G | chr1:1058885 | -960 | -448 | -4,864 | — |
| chr1_1058879_A_G | chr1:1058879 | -928 | -528 | -5,120 | — |
| chr1_1059186_C_A | chr1:1059186 | -896 | 384 | -10,752 | 6.6e-6 |
| chr1_1058970_C_G | chr1:1058970 | 896 | -144 | 5,120 | — |
| chr1_1058873_G_A | chr1:1058873 | 896 | 640 | 4,864 | — |
| chr1_1058881_G_T | chr1:1058881 | 864 | 704 | 5,376 | — |
| chr1_1058875_G_C | chr1:1058875 | 864 | 288 | 5,120 | — |
| chr1_1058874_G_T | chr1:1058874 | 832 | 784 | 5,376 | — |
| chr1_1059604_G_C | chr1:1059604 | -768 | -336 | -6,656 | 2.0e-5 |
| chr1_1058733_G_A | chr1:1058733 | 736 | 384 | 6,144 | 6.6e-6 |
| chr1_1059389_C_T | chr1:1059389 | 704 | 2,176 | 18,944 | 6.6e-6 |
| chr1_1058873_G_C | chr1:1058873 | 704 | 608 | 6,400 | — |
| chr1_1058931_G_T | chr1:1058931 | 704 | 112 | 5,376 | — |
| chr1_1058901_A_G | chr1:1058901 | -704 | -512 | -4,864 | — |
| chr1_1059390_C_A | chr1:1059390 | 640 | 1,216 | 11,008 | 6.0e-2 |
| chr1_1058723_G_T | chr1:1058723 | 640 | 1,232 | 6,400 | 6.6e-6 |
| chr1_1058883_G_C | chr1:1058883 | 640 | 592 | 6,400 | — |
| chr1_1059021_G_A | chr1:1059021 | -640 | -16 | -5,632 | 6.6e-6 |
| chr1_1058708_G_T | chr1:1058708 | 640 | 512 | 5,120 | 6.6e-6 |
| chr1_1058928_C_G | chr1:1058928 | 640 | -688 | 4,864 | — |
| chr1_1058951_C_G | chr1:1058951 | 608 | 128 | 7,680 | — |
| chr1_1058883_G_T | chr1:1058883 | 608 | 768 | 6,144 | — |
| chr1_1058935_T_A | chr1:1058935 | -576 | 0 | -8,448 | — |
| chr1_1058883_G_A | chr1:1058883 | 544 | 688 | 5,376 | — |
| chr1_1058880_G_C | chr1:1058880 | 512 | 448 | 4,864 | — |
| chr1_1058746_T_G | chr1:1058746 | -480 | -928 | -4,864 | 1.5e-5 |
| chr1_1059488_G_T | chr1:1059488 | -320 | 416 | 7,680 | 6.6e-6 |
| chr1_1059494_A_T | chr1:1059494 | -320 | 384 | 6,656 | 6.6e-6 |
| chr1_1058929_A_G | chr1:1058929 | -256 | -416 | 5,120 | — |
| chr1_1059513_C_A | chr1:1059513 | 192 | 272 | 7,680 | 2.6e-5 |
| chr1_1059504_A_T | chr1:1059504 | -192 | 64 | 7,424 | 6.6e-5 |
| chr1_1059502_C_T | chr1:1059502 | -128 | 976 | 12,032 | 3.9e-5 |
Showing 200 of 200 in this window. Scores are the raw center bin Δ, ALT minus REF; click a column to sort.