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LINC01342
This gene is outside the curated CAMIP panel, so it has no curated annotation. Its scored variants from the atlas are listed below.
Scored variants near LINC01342
chr1:1,037,016..1,244,054, gene body plus 100 kb. Showing the strongest 200 by effect size.
| Variant | Position | PXR | FXR | AhR | AF |
|---|---|---|---|---|---|
| chr1_1059393_C_T | chr1:1059393 | 0.301 | 0.218 | 1.000 | <0.001% |
| chr1_1059615_T_A | chr1:1059615 | -0.821 | -0.187 | -1.000 | <0.001% |
| chr1_1038127_C_G | chr1:1038127 | -0.730 | -1.000 | -1.000 | 0.0013% |
| chr1_1059413_C_A | chr1:1059413 | 0.180 | 0.223 | 1.000 | 0.0013% |
| chr1_1038126_A_G | chr1:1038126 | -0.619 | -1.000 | -1.000 | 0.0020% |
| chr1_1059395_C_T | chr1:1059395 | 0.148 | 0.137 | 1.000 | 0.0033% |
| chr1_1058362_C_G | chr1:1058362 | -0.029 | 0.377 | 1.000 | 0.0013% |
| chr1_1059397_C_A | chr1:1059397 | 0.206 | 0.131 | 0.988 | 0.014% |
| chr1_1038100_G_A | chr1:1038100 | -0.481 | -0.843 | -0.906 | <0.001% |
| chr1_1038134_C_G | chr1:1038134 | -0.463 | -0.739 | -0.894 | <0.001% |
| chr1_1059614_C_A | chr1:1059614 | -0.421 | -0.143 | -0.894 | 0.0013% |
| chr1_1058486_T_A | chr1:1058486 | -0.405 | -0.761 | -0.888 | <0.001% |
| chr1_1058485_G_A | chr1:1058485 | -0.329 | -0.631 | -0.882 | 0.0013% |
| chr1_1059389_C_T | chr1:1059389 | 0.018 | 0.173 | 0.871 | <0.001% |
| chr1_1058247_G_C | chr1:1058247 | 0.377 | 1.000 | 0.835 | 0.0039% |
| chr1_1059632_G_T | chr1:1059632 | -0.466 | 0.202 | -0.341 | 0.030% |
| chr1_1058930_G_C | chr1:1058930 | 0.048 | -0.115 | 0.812 | — |
| chr1_1059602_C_T | chr1:1059602 | -0.437 | -0.052 | -0.459 | <0.001% |
| chr1_1059413_C_T | chr1:1059413 | 0.082 | 0.159 | 0.765 | 0.423% |
| chr1_1038064_G_A | chr1:1038064 | 0.426 | 0.642 | 0.588 | <0.001% |
| chr1_1038182_C_A | chr1:1038182 | -0.424 | -0.662 | -0.671 | 0.0013% |
| chr1_1058523_A_G | chr1:1058523 | -0.355 | -0.670 | -0.718 | 0.0013% |
| chr1_1037801_C_T | chr1:1037801 | -0.344 | -0.336 | -0.688 | <0.001% |
| chr1_1058424_A_G | chr1:1058424 | -0.268 | -0.418 | -0.682 | 0.0026% |
| chr1_1058753_G_T | chr1:1058753 | 0.060 | 0.089 | 0.671 | <0.001% |
| chr1_1059314_C_G | chr1:1059314 | 0.141 | 0.072 | 0.671 | 0.0033% |
| chr1_1038119_C_T | chr1:1038119 | -0.373 | -0.759 | -0.635 | <0.001% |
| chr1_1059609_G_A | chr1:1059609 | -0.370 | -0.057 | -0.659 | <0.001% |
| chr1_1058753_G_A | chr1:1058753 | 0.038 | 0.084 | 0.647 | <0.001% |
| chr1_1059384_C_G | chr1:1059384 | 0.181 | 0.098 | 0.647 | <0.001% |
| chr1_1058522_C_T | chr1:1058522 | -0.352 | -0.731 | -0.635 | <0.001% |
| chr1_1059638_C_G | chr1:1059638 | -0.354 | -0.025 | -0.282 | 0.0013% |
| chr1_1058484_C_A | chr1:1058484 | -0.290 | -0.419 | -0.624 | 0.0026% |
| chr1_1058450_C_A | chr1:1058450 | 0.349 | 0.396 | 0.506 | <0.001% |
| chr1_1058752_G_A | chr1:1058752 | 0.038 | 0.076 | 0.612 | 0.0013% |
| chr1_1038061_G_C | chr1:1038061 | 0.341 | 0.530 | 0.471 | <0.001% |
| chr1_1038103_G_A | chr1:1038103 | -0.338 | -0.622 | -0.600 | <0.001% |
| chr1_1038179_C_A | chr1:1038179 | -0.339 | -0.584 | -0.588 | <0.001% |
| chr1_1059610_G_A | chr1:1059610 | -0.146 | -0.041 | -0.576 | <0.001% |
| chr1_1058403_C_T | chr1:1058403 | -0.206 | -0.334 | -0.571 | <0.001% |
| chr1_1059502_C_T | chr1:1059502 | -0.003 | 0.077 | 0.553 | 0.0039% |
| chr1_1059635_T_A | chr1:1059635 | -0.302 | 0.014 | -0.212 | <0.001% |
| chr1_1058752_G_T | chr1:1058752 | 0.027 | 0.071 | 0.529 | 0.0013% |
| chr1_1059520_C_T | chr1:1059520 | 0.037 | 0.046 | 0.529 | 0.0026% |
| chr1_1038136_G_T | chr1:1038136 | -0.298 | -0.437 | -0.435 | <0.001% |
| chr1_1037792_G_C | chr1:1037792 | -0.251 | -0.301 | -0.524 | <0.001% |
| chr1_1058869_A_G | chr1:1058869 | -0.037 | -0.094 | -0.518 | — |
| chr1_1058888_A_G | chr1:1058888 | -0.051 | -0.103 | -0.506 | — |
| chr1_1059390_C_A | chr1:1059390 | 0.017 | 0.096 | 0.506 | 6.03% |
| chr1_1059558_G_A | chr1:1059558 | -0.025 | 0.099 | 0.506 | 0.0013% |
| chr1_1058483_G_C | chr1:1058483 | -0.180 | -0.393 | -0.494 | 0.0085% |
| chr1_1058754_G_A | chr1:1058754 | 0.049 | 0.075 | 0.494 | 0.0013% |
| chr1_1058756_T_G | chr1:1058756 | -0.052 | -0.098 | -0.494 | 0.0049% |
| chr1_1059186_C_A | chr1:1059186 | -0.023 | 0.030 | -0.494 | <0.001% |
| chr1_1037792_G_T | chr1:1037792 | -0.210 | -0.235 | -0.488 | <0.001% |
| chr1_1058531_G_A | chr1:1058531 | 0.275 | 0.565 | 0.424 | <0.001% |
| chr1_1038066_G_A | chr1:1038066 | 0.271 | 0.398 | 0.424 | <0.001% |
| chr1_1058758_A_G | chr1:1058758 | -0.047 | -0.156 | -0.476 | <0.001% |
| chr1_1058483_G_A | chr1:1058483 | -0.154 | -0.317 | -0.471 | 0.0026% |
| chr1_1058969_C_G | chr1:1058969 | 0.081 | 0.041 | 0.471 | — |
| chr1_1059614_C_T | chr1:1059614 | -0.083 | 0.016 | -0.471 | <0.001% |
| chr1_1037816_C_T | chr1:1037816 | -0.254 | -0.286 | -0.465 | <0.001% |
| chr1_1038104_G_A | chr1:1038104 | -0.261 | -0.449 | -0.400 | <0.001% |
| chr1_1037806_C_T | chr1:1037806 | 0.256 | 0.160 | 0.306 | 0.0039% |
| chr1_1058905_A_G | chr1:1058905 | -0.047 | -0.093 | -0.447 | — |
| chr1_1059657_G_A | chr1:1059657 | -0.253 | 0.112 | 0.424 | 0.0020% |
| chr1_1038047_C_T | chr1:1038047 | -0.195 | -0.305 | -0.435 | <0.001% |
| chr1_1059674_G_T | chr1:1059674 | -0.243 | -0.013 | -0.318 | 0.019% |
| chr1_1058577_C_A | chr1:1058577 | -0.117 | -0.152 | -0.424 | 0.0013% |
| chr1_1059516_G_A | chr1:1059516 | -0.030 | 0.046 | 0.424 | 0.0053% |
| chr1_1058513_G_C | chr1:1058513 | -0.236 | -0.392 | -0.412 | <0.001% |
| chr1_1058930_G_T | chr1:1058930 | 0.034 | -0.061 | 0.412 | — |
| chr1_1059690_C_G | chr1:1059690 | -0.231 | -0.033 | 0.094 | <0.001% |
| chr1_1058893_T_G | chr1:1058893 | -0.042 | -0.076 | -0.400 | — |
| chr1_1059424_G_C | chr1:1059424 | -0.085 | -0.055 | -0.400 | 0.0013% |
| chr1_1058415_T_G | chr1:1058415 | -0.094 | -0.268 | -0.394 | <0.001% |
| chr1_1038016_G_T | chr1:1038016 | 0.221 | 0.256 | 0.365 | <0.001% |
| chr1_1058891_G_C | chr1:1058891 | 0.033 | 0.051 | 0.388 | — |
| chr1_1058931_G_C | chr1:1058931 | 0.047 | 0.006 | 0.388 | — |
| chr1_1058935_T_A | chr1:1058935 | -0.015 | 0.000 | -0.388 | — |
| chr1_1059318_G_A | chr1:1059318 | 0.088 | 0.030 | 0.388 | 0.0013% |
| chr1_1059651_C_G | chr1:1059651 | -0.220 | -0.055 | -0.282 | <0.001% |
| chr1_1058479_G_A | chr1:1058479 | -0.116 | -0.258 | -0.382 | 5.76% |
| chr1_1037800_G_T | chr1:1037800 | -0.155 | -0.160 | -0.376 | <0.001% |
| chr1_1058425_T_C | chr1:1058425 | -0.136 | -0.032 | -0.376 | 0.0059% |
| chr1_1058890_G_C | chr1:1058890 | 0.032 | 0.079 | 0.376 | — |
| chr1_1059591_G_C | chr1:1059591 | -0.211 | -0.062 | -0.282 | 0.0013% |
| chr1_1037890_C_T | chr1:1037890 | 0.208 | 0.234 | 0.200 | <0.001% |
| chr1_1058551_A_T | chr1:1058551 | -0.166 | -0.258 | -0.365 | 0.022% |
| chr1_1058882_G_C | chr1:1058882 | 0.036 | 0.063 | 0.365 | — |
| chr1_1058500_G_A | chr1:1058500 | -0.200 | -0.431 | -0.329 | 0.0020% |
| chr1_1038061_G_A | chr1:1038061 | -0.176 | -0.279 | -0.353 | 0.0026% |
| chr1_1058951_C_G | chr1:1058951 | 0.016 | 0.010 | 0.353 | — |
| chr1_1059414_C_G | chr1:1059414 | 0.096 | 0.079 | 0.353 | 0.0026% |
| chr1_1059488_G_T | chr1:1059488 | -0.008 | 0.033 | 0.353 | <0.001% |
| chr1_1059513_C_A | chr1:1059513 | 0.005 | 0.022 | 0.353 | 0.0026% |
| chr1_1058430_C_T | chr1:1058430 | -0.100 | -0.213 | -0.347 | 0.011% |
| chr1_1038081_G_A | chr1:1038081 | -0.195 | -0.315 | -0.294 | <0.001% |
| chr1_1037865_G_A | chr1:1037865 | -0.125 | -0.148 | -0.341 | <0.001% |
| chr1_1058574_G_C | chr1:1058574 | 0.161 | 0.325 | 0.341 | 0.0085% |
| chr1_1058881_G_C | chr1:1058881 | 0.027 | 0.053 | 0.341 | — |
| chr1_1058953_A_C | chr1:1058953 | 0.060 | 0.039 | 0.341 | — |
| chr1_1059480_A_G | chr1:1059480 | -0.083 | -0.036 | -0.341 | <0.001% |
| chr1_1059504_A_T | chr1:1059504 | -0.005 | 0.005 | 0.341 | 0.0066% |
| chr1_1059671_C_G | chr1:1059671 | -0.188 | -0.008 | -0.212 | 0.0034% |
| chr1_1038139_C_T | chr1:1038139 | 0.146 | 0.142 | 0.329 | 0.014% |
| chr1_1058874_G_C | chr1:1058874 | 0.029 | 0.062 | 0.329 | — |
| chr1_1037799_G_A | chr1:1037799 | -0.160 | -0.169 | -0.318 | <0.001% |
| chr1_1058950_C_G | chr1:1058950 | 0.052 | 0.016 | 0.318 | — |
| chr1_1058971_C_G | chr1:1058971 | 0.033 | -0.006 | 0.318 | — |
| chr1_1037804_A_G | chr1:1037804 | 0.178 | 0.162 | 0.306 | 0.0086% |
| chr1_1058882_G_A | chr1:1058882 | 0.039 | 0.074 | 0.306 | — |
| chr1_1059184_G_T | chr1:1059184 | -0.048 | -0.008 | -0.306 | <0.001% |
| chr1_1059494_A_T | chr1:1059494 | -0.008 | 0.030 | 0.306 | <0.001% |
| chr1_1059529_C_A | chr1:1059529 | 0.057 | 0.024 | 0.306 | <0.001% |
| chr1_1059604_G_C | chr1:1059604 | -0.020 | -0.027 | -0.306 | 0.0020% |
| chr1_1059655_G_A | chr1:1059655 | 0.098 | 0.043 | 0.306 | <0.001% |
| chr1_1059660_T_A | chr1:1059660 | -0.171 | -0.070 | -0.282 | <0.001% |
| chr1_1058723_G_T | chr1:1058723 | 0.017 | 0.098 | 0.294 | <0.001% |
| chr1_1058873_G_C | chr1:1058873 | 0.018 | 0.048 | 0.294 | — |
| chr1_1058883_G_C | chr1:1058883 | 0.017 | 0.047 | 0.294 | — |
| chr1_1058907_A_G | chr1:1058907 | -0.036 | -0.061 | -0.294 | — |
| chr1_1058972_C_G | chr1:1058972 | 0.052 | 0.003 | 0.294 | — |
| chr1_1058994_A_G | chr1:1058994 | -0.033 | -0.025 | -0.294 | — |
| chr1_1059351_G_A | chr1:1059351 | 0.037 | 0.027 | 0.294 | 0.0020% |
| chr1_1059381_G_A | chr1:1059381 | -0.104 | -0.026 | -0.294 | 0.0059% |
| chr1_1038169_G_T | chr1:1038169 | 0.155 | 0.226 | 0.282 | <0.001% |
| chr1_1058418_G_A | chr1:1058418 | 0.155 | 0.180 | 0.282 | 0.205% |
| chr1_1058733_G_A | chr1:1058733 | 0.019 | 0.030 | 0.282 | <0.001% |
| chr1_1058882_G_T | chr1:1058882 | 0.032 | 0.070 | 0.282 | — |
| chr1_1058883_G_T | chr1:1058883 | 0.016 | 0.061 | 0.282 | — |
| chr1_1058890_G_T | chr1:1058890 | 0.032 | 0.079 | 0.282 | — |
| chr1_1058891_G_T | chr1:1058891 | 0.031 | 0.065 | 0.282 | 0.555% |
| chr1_1058910_C_G | chr1:1058910 | -0.044 | -0.074 | -0.282 | — |
| chr1_1058971_C_A | chr1:1058971 | 0.038 | -0.008 | 0.282 | — |
| chr1_1059534_G_A | chr1:1059534 | -0.032 | 0.037 | 0.282 | <0.001% |
| chr1_1058382_G_A | chr1:1058382 | -0.145 | -0.245 | -0.276 | <0.001% |
| chr1_1038216_G_C | chr1:1038216 | -0.146 | -0.236 | -0.271 | 0.0033% |
| chr1_1058393_A_C | chr1:1058393 | 0.088 | 0.065 | 0.271 | 0.0020% |
| chr1_1058474_G_A | chr1:1058474 | 0.047 | -0.179 | -0.271 | <0.001% |
| chr1_1058545_G_A | chr1:1058545 | -0.093 | -0.132 | -0.271 | 0.0020% |
| chr1_1058755_G_T | chr1:1058755 | 0.028 | 0.051 | 0.271 | 0.0079% |
| chr1_1058871_T_G | chr1:1058871 | -0.027 | -0.039 | -0.271 | — |
| chr1_1058886_C_G | chr1:1058886 | -0.032 | -0.063 | -0.271 | — |
| chr1_1058900_C_G | chr1:1058900 | -0.030 | -0.051 | -0.271 | — |
| chr1_1058952_T_G | chr1:1058952 | 0.027 | 0.023 | 0.271 | — |
| chr1_1058396_C_T | chr1:1058396 | 0.135 | 0.462 | -0.035 | 0.096% |
| chr1_1037859_C_T | chr1:1037859 | 0.150 | 0.162 | 0.129 | <0.001% |
| chr1_1037838_C_T | chr1:1037838 | -0.143 | -0.192 | -0.259 | 0.0026% |
| chr1_1037882_G_T | chr1:1037882 | 0.146 | 0.142 | 0.176 | 0.0020% |
| chr1_1038283_T_C | chr1:1038283 | 0.078 | 0.119 | 0.259 | 0.016% |
| chr1_1058874_G_A | chr1:1058874 | 0.027 | 0.060 | 0.259 | — |
| chr1_1059021_G_A | chr1:1059021 | -0.017 | -0.001 | -0.259 | <0.001% |
| chr1_1059327_G_T | chr1:1059327 | -0.047 | 0.000 | -0.259 | 0.0039% |
| chr1_1059509_C_A | chr1:1059509 | -0.045 | 0.023 | 0.259 | <0.001% |
| chr1_1058176_C_T | chr1:1058176 | -0.048 | -0.079 | -0.247 | <0.001% |
| chr1_1058874_G_T | chr1:1058874 | 0.022 | 0.062 | 0.247 | — |
| chr1_1058881_G_A | chr1:1058881 | 0.025 | 0.056 | 0.247 | — |
| chr1_1058881_G_T | chr1:1058881 | 0.022 | 0.056 | 0.247 | — |
| chr1_1058883_G_A | chr1:1058883 | 0.014 | 0.055 | 0.247 | — |
| chr1_1058889_G_C | chr1:1058889 | 0.025 | 0.052 | 0.247 | — |
| chr1_1058891_G_A | chr1:1058891 | 0.029 | 0.057 | 0.247 | — |
| chr1_1058931_G_T | chr1:1058931 | 0.018 | 0.009 | 0.247 | — |
| chr1_1058950_C_A | chr1:1058950 | 0.052 | 0.010 | 0.247 | — |
| chr1_1058953_A_G | chr1:1058953 | 0.027 | 0.005 | 0.247 | — |
| chr1_1058972_C_A | chr1:1058972 | 0.047 | 0.014 | 0.247 | — |
| chr1_1058972_C_T | chr1:1058972 | 0.038 | 0.003 | 0.247 | — |
| chr1_1058982_A_G | chr1:1058982 | -0.033 | -0.019 | -0.247 | — |
| chr1_1058997_A_G | chr1:1058997 | -0.037 | -0.014 | -0.247 | <0.001% |
| chr1_1059391_G_T | chr1:1059391 | 0.065 | 0.011 | 0.247 | 0.0020% |
| chr1_1059429_G_A | chr1:1059429 | -0.082 | -0.031 | -0.247 | <0.001% |
| chr1_1059639_C_A | chr1:1059639 | -0.140 | -0.010 | -0.035 | 0.0083% |
| chr1_1038217_G_T | chr1:1038217 | -0.138 | -0.188 | -0.224 | <0.001% |
| chr1_1038087_A_G | chr1:1038087 | -0.110 | -0.074 | -0.235 | <0.001% |
| chr1_1038254_A_G | chr1:1038254 | -0.063 | -0.119 | -0.235 | <0.001% |
| chr1_1058581_G_T | chr1:1058581 | -0.033 | -0.025 | -0.235 | <0.001% |
| chr1_1058708_G_T | chr1:1058708 | 0.017 | 0.041 | 0.235 | <0.001% |
| chr1_1058875_G_C | chr1:1058875 | 0.022 | 0.023 | 0.235 | — |
| chr1_1058879_A_G | chr1:1058879 | -0.024 | -0.042 | -0.235 | — |
| chr1_1058929_A_G | chr1:1058929 | -0.007 | -0.033 | 0.235 | — |
| chr1_1058954_G_A | chr1:1058954 | 0.040 | 0.033 | 0.235 | — |
| chr1_1058954_G_C | chr1:1058954 | 0.045 | 0.023 | 0.235 | <0.001% |
| chr1_1058959_G_T | chr1:1058959 | -0.027 | 0.016 | -0.235 | — |
| chr1_1058969_C_T | chr1:1058969 | 0.046 | 0.020 | 0.235 | — |
| chr1_1058970_C_G | chr1:1058970 | 0.023 | -0.011 | 0.235 | — |
| chr1_1059112_G_C | chr1:1059112 | -0.065 | 0.009 | -0.235 | 0.0013% |
| chr1_1059139_G_C | chr1:1059139 | 0.050 | 0.027 | 0.235 | <0.001% |
| chr1_1059268_C_G | chr1:1059268 | -0.042 | -0.022 | -0.235 | <0.001% |
| chr1_1038020_G_A | chr1:1038020 | -0.131 | -0.180 | 0.012 | <0.001% |
| chr1_1059638_C_A | chr1:1059638 | -0.131 | 0.047 | 0.129 | 0.0026% |
| chr1_1058525_A_G | chr1:1058525 | -0.127 | -0.306 | -0.047 | 0.0020% |
| chr1_1037770_G_A | chr1:1037770 | -0.126 | -0.121 | -0.224 | <0.001% |
| chr1_1038025_G_A | chr1:1038025 | 0.078 | 0.185 | 0.224 | <0.001% |
| chr1_1058600_C_T | chr1:1058600 | -0.055 | -0.112 | -0.224 | 0.0013% |
| chr1_1058746_T_G | chr1:1058746 | -0.012 | -0.074 | -0.224 | 0.0015% |
| chr1_1058873_G_A | chr1:1058873 | 0.023 | 0.051 | 0.224 | — |
| chr1_1058880_G_C | chr1:1058880 | 0.013 | 0.036 | 0.224 | — |
| chr1_1058885_C_G | chr1:1058885 | -0.025 | -0.036 | -0.224 | — |
| chr1_1058901_A_G | chr1:1058901 | -0.018 | -0.041 | -0.224 | — |
| chr1_1058928_C_G | chr1:1058928 | 0.017 | -0.055 | 0.224 | — |
Showing 200 of 200 in this window. Scores are the p99-scaled [−1, 1] value; click a column to sort.